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Properties
| Property Name | Value |
|---|
| Product | Protease-associated domain, PA |
| Orig transcript id | gnl|cribi|Naga_100416g1.4402.mrna |
| Orig protein id | gnl|cribi|Naga_100416g1.4402 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002470.1 | supercontig | CM002470.1:576055..578254 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna7153 ID=rna7153|Name=rna7153|organism=Nannochloropsis gaditana|type=mRNA|length=929bp
CCACAACCCCTTTCCTTGGTCCAAAGACATGCTCACGCTTACTTTTGCGC
ACATCGGACAGGCAGTGTCGGCTTGTCTGTCCTCCTTCATGTTCGAGCTT
GTTGCCATCATCCCCGAGTGGTCACCGTAGGGCTCTAGCTATGTTTTCCC
CTCCCTCCTCCTCCTCCTCCTCCTCTTCCTCCTCCTCCTCCTCCTTCTCC
TCCTCCTCTTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTTCTCCTCCTC
CTCTTCCTCCTCCTCCTCCACCATCACCACCCACCCCTGCTCCTTAGCGT
TTCAAATTCGTCACTCCAACGCTCCTTCATCAGCTTCAGTACTAGTAAGA
CGTGAGATGGCCTTGCGCTTCGAGCGAACATCGTCTGCTGTCTTGCCCGT
GTACTCTAGAGCTTCATGGCTGGCATCAGGCCTTTTGCTCGCCTTCTTCC
TTCTCGTCCATACATTTCAATTAACGAATGCGCAGCTGGAACCAGCCCCT
GTGCTTCCACCGCCTCAGACCCGCCCTCTTCCCAAAGTCCACCTCAGCGA
GCAGGAACGCGTCCTCCTCCGCGACGAATCGCGGGAGATGTTTTATCACG
CCTTCAACAGCTATATGGCGCACGCCTACCCTTTCGATGAGCTGATGCCG
CTCTCCTGCAAAGGTCGGGATTGGAGAAAGCGAGATCGCGGCACACTGGA
CGATCCGCTAGGGGGGTATGCGCTGACCCTGGTGGACTCCTTGGACATGC
TGGCCGTGATAGGCGACTATCTCGATTTCTACCAGGCGGTCCAGGAAGTC
ATCCGCACCCTCCGCTTCGACCGGAACGTCACCGTCAGTGTCTTCGAAGC
GACCATCCGGGTCCTCGGAGGCCTCCTCTCCGCCCACTCCATCTTGCTCT
CGGAGGAGATGGCGCCCCGTGTTTCGGTC back to topprotein sequence of rna7153 >rna7153-protein ID=rna7153-protein|Name=rna7153|organism=Nannochloropsis gaditana|type=polypeptide|length=422bp
MVLKCDHALHVCKVGHLARSPVSLAFYRAEGGKEGGKEGGKEGGKEDLQG
LWEQSREAAVTHMEHDATPSLRVAGYPADFGPDLRLEGPLFARLAPVLSP
TPPVPHSGEGSPSYHAEPENTSTGKHRNDGNPAFHRGCLPFSEEEGKGMV
GRVVVVERGGCSYLTKARHVQAVGGVGMVVLDLAHVPASPASVSAPPSPE
RGGQDLGGPSGRVGGKGGGEEAVKSLFKAWEVMAQDGSGGDITIPSLLLT
REMARKVLDSGILLHPKEGRREDDKVWVRLGSFKAMALEEEKELLDLTPL
IGPASGRREGERAGVKEGKLAMNFEDLLASVMQGMKDMLVSDEKGNGQSP
DAEEEADDEEEDSDEEEEEESDVEEEEDEDEDEEEDEEEEEEEEEDGAEW
NDDDWGEWDMERVREGGREGRR back to topmRNA from alignment at CM002470.1:576055..578254+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna7153 ID=rna7153|Name=rna7153|organism=Nannochloropsis gaditana|type=mRNA|length=2200bp|location=Sequence derived from alignment at CM002470.1:576055..578254+ (Nannochloropsis gaditana)
ATATGTAGGAATGGATGAGGCTATACTCACTCCCCACGCTCTTCCCGTCC
CTGACAGGCTTTCACATCCTTCCATCCGGCGCTGCaatccccttccctcc
ctccctccctccctccctccctcttccgtccCAATATGGTCCTCAAGTGc
gaccacgccctccacgtATGTAAAGTCGGCCACCTCGCACgctcccccgt
ctccctcgccttttaccgggcggagggcgggaaggagggcgggaaggagg
gcgggaaggagggcgggaaggaggacttgCAGGGCCTCTGGGAGCAGTCG
CGGGAAGCTGCCGTCACCCATGTGAGTGCCATGCTCACCTGACCACGCCc
acccttgcctcccgctccctttccgtcctctctccctggccccttcttcc
ttgtctataccccttttcctcccccaggaAGGGAACCActgaacctccct
ccctccctccctccctccctccctccctccattcatCCAGATGGAGCATG
ACGCCACCCCTTCTCTGCGCGTCGCGGGATACCCGGCAGACTTCGGCCCC
GACCTTCGACTCGAGGGCCCTCTGTTTGCTCGGCTGGCTCCCGTCTTGTC
CCCTACCCCCCCTGTGCCTCACTCAGGGGAAGGCAGTCCGTCCTACCACG
CCGAACCCGAGAATACCAGTACGGGAAAGCACCGGAACGACGGAAATCCT
GCTTTCCACCGAGGCTGTCTGCCCTTttcggaagaagaggggaaaggtaT
GGTGGGACGTGTGGTTGTGGTGGAGCGCGGCGGGTGTTCGTACCTGACCA
AGGCCCGCCATGTGCAGGCCGTGGGCGGGGTGGGGATGGTCGTTTTGGAC
CTGGCCCAtgtccctgcttcccccgcctctgtTTCTGCCCCGCCGTCACC
AGAGAGAGGTGGACAGGACCTTGGGGGTCCGAGCGGGcgggtaggaggga
aaggggggggggaggaggctgtcAAGTCCTTGTTCAAGGCGTGGGAGGTC
ATGGCACAGGACGGGAGCGGGGGCGACATtaccattccctccctcctttt
gaCCCgggaaatggcgcgaaaagtgCTCGACTCTGGgattctcctccatc
ctaaggaggggaggagggaagacgacaaGGTGTGGGTGCGCCTCGGGTCC
TTCAAGGCGATGgcgttggaagaggagaaggagctttTGGATTTGACCCC
GTTGATAGGACCGGCCTccggacggagggagggagaaagggcgggagtga
aggaaggaaagctaGCAATGAATTTTGAAGATCTCTTGGCTTCTGTGATG
CAGGGGATGAAGGATATGCTTGTGTCGGACGAGAAGGGCAACGGTCAGTC
ACCTGacgcggaagaagaagcggacgacgaggaagaggacagtgacgaag
aggaggaggaagaaagcgacgtcgaggaagaggaggacgaggacgaggac
gaggaggaggacgaggaggaggaagaagaagaagaggaggatggggcgga
GTGGAATGATGACGATTGGGGCGAGTGGGATATGGAGAGagttagggagg
gagggagggagggaagaagataGAGAGCACACGGCAAGCTGATGCCGATC
TGACTGTCCGGTGAAGGATTTTTAAAATTGTATCCGAGTAGGATATAGGG
GAAATCTCTGAGCGTCAGGGCTGAGTTTTGGAAGGTTTGCACAGTAGGGA
TAAATTTATTCTGAGCACACTACCAGTGCAGTCCTTTTTTGGCATAATCT
ATGTAGTCGCTAAAAAGTACACGCTTTGCCCGGCAGTAAGCCACGGGAAT
GTCGATGAGAAACAATAGGTGATTCGAGAGAAGTCTGGAGTAAGGAGGAA
ATCGGAGACTTGCCCGCTAAAATTTGATACAGAGGATAGTCAAGTCAGGT
AAAGAGTAGAGTTCGCTGTGTTCGAAAAACTAGAGAGGTTGCGGTGTTTT
AAATACCTACTTAAGAGTCCGTTCTTGCTTttatctttcctcccgctcgt
tTTCCGCGAGCCTGACACCCATCCATTCGTCCTCGTCAGAATATTTGGAA
ACATACTTGCTTTATTTGGGCTCCTCAGAATCATATGGAACATATTGGTT
TTAGACAGATAACTTCGTATAGAGCAAGACCTTTTTTAACAGTGCTGTGT
CGTGGTTTCTTCTGCATATCCTGGACTGAGAGCTGATGAGAGCGACTATC
back to topCoding sequence (CDS) from alignment at CM002470.1:576055..578254+ >rna7153 ID=rna7153|Name=rna7153|organism=Nannochloropsis gaditana|type=CDS|length=2538bp|location=Sequence derived from alignment at CM002470.1:576055..578254+ (Nannochloropsis gaditana)
ATGGTCCTCAAGTGcgaccacgccctccacgtATGTAAAGTCGGCCACCT
CGCACgctcccccgtctccctcgccttttaccgggcggagggcgggaagg
agggcgggaaggagggcgggaaggagggcgggaaggaggacttgCAGGGC
CTCTGGGAGCAGTCGCGGGAAGCTGCCGTCACCCATATGGAGCATGACGC
CACCCCTTCTCTGCGCGTCGCGGGATACCCGGCAGACTTCGGCCCCGACC
TTCGACTCGAGGGCCCTCTGTTTGCTCGGCTGGCTCCCGTCTTGTCCCCT
ACCCCCCCTGTGCCTCACTCAGGGGAAGGCAGTCCGTCCTACCACGCCGA
ACCCGAGAATACCAGTACGGGAAAGCACCGGAACGACGGAAATCCTGCTT
TCCACCGAGGCTGTCTGCCCTTttcggaagaagaggggaaaggtaTGGTG
GGACGTGTGGTTGTGGTGGAGCGCGGCGGGTGTTCGTACCTGACCAAGGC
CCGCCATGTGCAGGCCGTGGGCGGGGTGGGGATGGTCGTTTTGGACCTGG
CCCAtgtccctgcttcccccgcctctgtTTCTGCCCCGCCGTCACCAGAG
AGAGGTGGACAGGACCTTGGGGGTCCGAGCGGGcgggtaggagggaaagg
ggggggggaggaggctgtcAAGTCCTTGTTCAAGGCGTGGGAGGTCATGG
CACAGGACGGGAGCGGGGGCGACATtaccattccctccctccttttgaCC
CgggaaatggcgcgaaaagtgCTCGACTCTGGgattctcctccatcctaa
ggaggggaggagggaagacgacaaGGTGTGGGTGCGCCTCGGGTCCTTCA
AGGCGATGgcgttggaagaggagaaggagctttTGGATTTGACCCCGTTG
ATAGGACCGGCCTccggacggagggagggagaaagggcgggagtgaagga
aggaaagctaGCAATGAATTTTGAAGATCTCTTGGCTTCTGTGATGCAGG
GGATGAAGGATATGCTTGTGTCGGACGAGAAGGGCAACGGTCAGTCACCT
Gacgcggaagaagaagcggacgacgaggaagaggacagtgacgaagagga
ggaggaagaaagcgacgtcgaggaagaggaggacgaggacgaggacgagg
aggaggacgaggaggaggaagaagaagaagaggaggatggggcggaGTGG
AATGATGACGATTGGGGCGAGTGGGATATGGAGAGagttagggagggagg
gagggagggaagaagataGATGGTCCTCAAGTGcgaccacgccctccacg
tATGTAAAGTCGGCCACCTCGCACgctcccccgtctccctcgccttttac
cgggcggagggcgggaaggagggcgggaaggagggcgggaaggagggcgg
gaaggaggacttgCAGGGCCTCTGGGAGCAGTCGCGGGAAGCTGCCGTCA
CCCATATGGAGCATGACGCCACCCCTTCTCTGCGCGTCGCGGGATACCCG
GCAGACTTCGGCCCCGACCTTCGACTCGAGGGCCCTCTGTTTGCTCGGCT
GGCTCCCGTCTTGTCCCCTACCCCCCCTGTGCCTCACTCAGGGGAAGGCA
GTCCGTCCTACCACGCCGAACCCGAGAATACCAGTACGGGAAAGCACCGG
AACGACGGAAATCCTGCTTTCCACCGAGGCTGTCTGCCCTTttcggaaga
agaggggaaaggtaTGGTGGGACGTGTGGTTGTGGTGGAGCGCGGCGGGT
GTTCGTACCTGACCAAGGCCCGCCATGTGCAGGCCGTGGGCGGGGTGGGG
ATGGTCGTTTTGGACCTGGCCCAtgtccctgcttcccccgcctctgtTTC
TGCCCCGCCGTCACCAGAGAGAGGTGGACAGGACCTTGGGGGTCCGAGCG
GGcgggtaggagggaaaggggggggggaggaggctgtcAAGTCCTTGTTC
AAGGCGTGGGAGGTCATGGCACAGGACGGGAGCGGGGGCGACATtaccat
tccctccctccttttgaCCCgggaaatggcgcgaaaagtgCTCGACTCTG
GgattctcctccatcctaaggaggggaggagggaagacgacaaGGTGTGG
GTGCGCCTCGGGTCCTTCAAGGCGATGgcgttggaagaggagaaggagct
ttTGGATTTGACCCCGTTGATAGGACCGGCCTccggacggagggagggag
aaagggcgggagtgaaggaaggaaagctaGCAATGAATTTTGAAGATCTC
TTGGCTTCTGTGATGCAGGGGATGAAGGATATGCTTGTGTCGGACGAGAA
GGGCAACGGTCAGTCACCTGacgcggaagaagaagcggacgacgaggaag
aggacagtgacgaagaggaggaggaagaaagcgacgtcgaggaagaggag
gacgaggacgaggacgaggaggaggacgaggaggaggaagaagaagaaga
ggaggatggggcggaGTGGAATGATGACGATTGGGGCGAGTGGGATATGG
AGAGagttagggagggagggagggagggaagaagataG back to top
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