rna7136, rna7136 (mRNA) Nannochloropsis gaditana

Overview
Namerna7136
Unique Namerna7136
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2781
Alignment locationCM002470.1:531513..533107 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100631g1.6900.mrna
Orig protein idgnl|cribi|Naga_100631g1.6900
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002470.1supercontigCM002470.1:531513..533107 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100631g1gene6900Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7136rna7136-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23556.1cds7119Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7136 ID=rna7136|Name=rna7136|organism=Nannochloropsis gaditana|type=mRNA|length=2781bp
AGCAGGCCAGCCAGAAGGAGGTAGACACGCAATTCTTTAGATGACCACAA
GGCGATTTTCCACCTTGCAAGGTGTCGACGCGGTGGAAAGAAATGCCTCG
TTCGTCCTCACGACGCCTTCCGCTGCAGGCTTGCTAACAACACAAAATGC
TCCTTTGATCTCGGAAGCTTTGGGCGCAGGGGCAAGCATGGATACAGCCG
CCTTGAGGAACCGACGAGGAAGCAAAGCAGCTCGATGGTCGTCCACGACG
CAAACCACGGCCAGTCGGACCGCACTGACCCTCCCGTCTACCACCTGCGC
CGCCAGTGATACAAGCAGCCTTCCTTATTCCTCGTCGTCTTGTCTGGAGG
CTTCTCCCAGGTTCCTGTTGCCCTCCGAATTGTGGAAGCATGTCATGTCG
TTTTTGAACCTGGACGCCATGCCGGTCCGCAGCCTCTTGGATCTGATGGG
CATCAACGCCTGCGCACAAATGCGCTCCCTCGACTTTTCTCAACGTCGCT
TAGGCGCCTGTGGGACGCGGATGTTGGCGGAGCGATTGCGGGGAGGAGCG
TGTCCTGAGTTAGACTCGTTGAACCTGACAGCGTGCGGAATCGGGCCAGG
GGGGGCGGAGGCGTTGAGCATTGCCATGCAGACTCATGGGCTGGCGCCAT
CTCTACGGGTGCTGCGCTTGGCAGGGAATGGGATGGGTTCCCGTGGCGTG
ACGGTGCTGGCAAAGGCTTTGAAAGGAGGGGCGGGGGCGAACCTCCGGGT
ACTAGACATGGACGGGAACAAGGCGAACGCGGTGGGCATGCTTTTGATGA
TCGAGGCGCTTAGTCAGGCGGCCTGTCCGGTATTGGAAGAGCTCTCGGTG
GGCCACAATACCTTGACGGACAAGGGTCTGGTGTACCTGGCTAAGACCTT
GGTGGACTCGAAACTCCCCCAGCTCCGTCGTCTGGCCATACCGGAAAGCG
CCGTGAGCACAGAGGGCATCCGCGCATTGGCCCGAGCCCTGAGTCTGGGC
GGGGGGGGAGGCCTGGAGACATTGGACTTGTCGGACAACCACCTGTACCC
GCAAGGCGCCGAGGCCCTGGCCATCGCCCTGGCGCAAGGGGCGGTGCCGG
CGTTGCGCCGCTTGATTCTCTCCCGGAACCGGATTTATGGGGACGGTACG
GCCGCCCTGACGGAGGCGCTGGGCCAAGGCCGGTGCCCCGCCTTGACCTG
GTTGGACCTACGTGGGAACAAGATAGGCTCGAAGGGGGCCGCCTCGGTCG
GCTCCCTCTTGTCCCGGGGGACCTGTCCGCGCTTGGCAGGGCTGGACGTG
GGAGGCAATTATTTGTACGCAGAGGGGACGGCGCTGCTGGCGTCTGCCTT
GATCCAACGTCCACAACCGGCGATGAAAAGCCTGGACGTGGAGGACAACG
CAATGACGGCCGAAGGTGCTTTCCTTTTGTCGGAAGCGATCCGACGGGGG
GCGGTGCGAGGGCTGGAGCGTTTGAATTTGGGCCGGAACGGCATCCATGC
CGAAGGGGTGGGCTTTCTGATGGCGGCGTTGGCCGAAGGCTCCTGTCCGC
GCTTGCGGAGCTTAAGCCTGCGCTCGAACGAGCTCGGCCCCTTTGGCTTT
GCGCACGTCGCCGCGTGCTTCCAACAGGGAGGGATGAAGGGCTTGGAGTT
CCTGGATCTGGCGGTGAACGGGATGTCGGACGAGCCTGCCACTTTGCTCC
TCCCCATCCTCTTGAGCCCCGTCCTCCTCCCGGCCCTCCGAGACGTGGAC
ATGACCTTCAACGGCCTTGACCCGACTCGGGCCCGGTGCCAAGTGCTGGC
GCTGCGCGGAGGGAGGGAAGGAGGGTCACATGGAGGTCGGGAGCCGAACA
TGCCGATGGTGCGTCTGGAACGCAAATCTTCCGTGCCCATCATTCGCCGC
ACCCAGTCGGCTCCGGCTTCCTCCGGGTAGGTTGCGGTGGTCCCACGGAG
GCAGCACAAGGAGGAGGGTGGAAGAAAGGGCGAGTTCCCTAGCTCTTTGG
TCTGTTCCACATGGCCACAAAGAGAACGGGAGAAAGCGGATGATCATGTG
TTTTGTGGACAAGGAATACCGATGGAGAGCTTCCGGAGTGAGCAAAGTCG
CGGCCGCAATGGCCTTTAAGACGAGGTGGAAGAGATACAGGGAAAGAGTA
AAGAAAGGGCGTTCGGAACGGAATATCTATATGCGATTAAGTTTGCACAA
CGATTTTTAAAGCGCCCAGATTCTCAAATGGCGACAGTCAAAATAGGAGT
AGAAGTCCTCTGCGTGTCACAGGTGAGGTGCATGATCAAATAGGTTTTAA
ATCAAGAATCTGGTGGTCCTTTATTTGTGAGAAGTAAGCCGCACAGCAAT
AGAGTGATGCTAAAACGCATCATGCCGTGCTTGCGAGGATGTCAGGGGGG
GTGTTTTTTACAAGAAATAGGACACCGCCAAAGCTTGTATGTTGAGGCCT
GACAGCAGGCCAGGGGCAGGAATATATGCCCGAAAGTACTCGAAAAGTCG
GAAAGGAAATTTGGAGCGTGGCGGAAACGGTGGTGATCTGAGCGGAACGA
ATCATCCGGCCAAAATAAGTGCCCCATGGTGCAATAGGAAAACTCCTGCT
ATGTGTCAAAGATTGAGACTTGCATATTCTGGGCAGAAAACAACATTCTG
CCGGTCTATATACTGCGTGTGCTGCATACTACATATGCAAGCGTATAATG
TGTACGGGTAAAAGGGACTATTTCTAACGAAAATAAGAGGAAGATAGCAA
CGAAGGGTCGTCGAGAACAAGCCCTCCCACG
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protein sequence of rna7136

>rna7136-protein ID=rna7136-protein|Name=rna7136|organism=Nannochloropsis gaditana|type=polypeptide|length=214bp
MQPAHRHRATRASTASAALVRQREAHLVRGEGEGSRGEGRTAIGTGFSVP
VPAYPATAPAASTSCGPMPGMKGGRAPGKEGRVRGGESGTGRQVSRRSGH
GDDGFGGGQTRSGGMQSRRRAASARGREDMEAGEEGEEGESPPPAKLVPR
REGGGEGGTEGGAGKGQVLVEGEGRGGNPGGRMHSFKVSGTVFKLDRRYE
MIRPIGTGAYGVVM
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mRNA from alignment at CM002470.1:531513..533107+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7136 ID=rna7136|Name=rna7136|organism=Nannochloropsis gaditana|type=mRNA|length=1595bp|location=Sequence derived from alignment at CM002470.1:531513..533107+ (Nannochloropsis gaditana)
TCCACCTCGCGCAAGCCTTCTTTCAAGCCTTTTCAAAAGACTGCACGCAG
GTGTCACCGCATTTTCACGGTAgctccctccttatcctcaAAATTTTGGC
CGGGACTGAGTCGACTGTGGAAAAGAATCTTTGGCGatttcctcgctttc
ttgAGCTTTCTTGTTCCCTTTCTTATCCCTGCCTCCGGCACTCCACCCGA
CCAAGTCTGGGGGGTCCGTCGACTCTGTATGTGGACTGGGAGAGCGTGAG
ATGGTGGTGTCAGGAGGCgtttggaggagaggggggggaagggaggaaac
gtgTGCATTCAATCCTGTCAGTACGCACTTGCTTGGCTAGGCCTGATTGA
GGGAGACAAATAATTTAAAGGGACAGAATTTTGATGAGAAGGCAATCGTA
TTTCCCTTCACAACATTTCCCCCTGCTCTGTCCTGTATTTTCCTGCGTTT
TGCATCACGTTTACATACACCTCTTCTCAAAAGGTGGTGGATTGACCGTG
ACAGCGTTTCGGCAAGTCAGTAGCACGTGGTTCTTCTCCCTTGATTGACA
GTGGGCATGATGTTCAGAGCGAGGGACGGACAGACGTCGGTCTAATGGCT
TCAGGCGTTGGAAAAAGGTCGACGGGCAATTTGTGAGGTATGTTGACGAG
CATGAAGGGGTACTTTGCATGAGCAAGGGTGGTAGTGGTGGAGACGTGCT
TTCAAAAGCAACAGCGAAGAGGACGTAGACAGGAGGgccggaggacatgg
aggtcCTCCAAGCTCACTGCTTCCTGCTTTTTATTTCGGCACAACGTCAG
TGTCGAGAGGTGCGTAGGTGTGACTGTGCCGGGATATTGTGCCGAAGCTC
CTGCGGAGGGCGATCGGAGGAGACAGCTTGAGGCGCCCCCGGCGGTCTTG
GTGGCGGTTGGGGAGGTCAGTTCTCGACCACGTGGATCCCCGCCTTGTGA
CATGCAGCCGGCGCACAGACACCGGGCCACGCGGGCATCcacggcctcgg
cggcccTGGTTCGGCAACGGGAAGCACACCTGGttcggggagagggggag
ggctctcggggggaggggaggacggccaTAGGCACCGGATTCTCTGTCCC
CGTGCCCGCCTATCCCGCCACGGCGCCCGCAGCGTCCACGTCGTGTGGGC
CGATGCCagggatgaaaggagggcgggcaccgggcaaggaggggcgtgtg
cgaggaggggagagcgggacTGGGCGGCAGGTGTCACGCCGGAGCGGCCA
CGGCGATGATGGGTTTGGAGGGGGTCAGACCAGGTCCGGCGGCATGCAAA
GCCGACGTCGGGCGGCGTCTGCgcgcggaagggaggacatggaggctggg
gaagagggagaggaaggggagtcGCCACCACCTGCCAAACTGGTGccacg
gcgggagggcgggggggagggcgggacagagggcggggcggggaaggggc
aggtgctggtggagggggagggaagaggcgggaaTCCAGGGGGAAGGATG
CATAGCTTCAAGGTTTCAGGAACGGTGTTTAAACTGGACCGGCGCTATGA
GATGATCCGGCCAATTGGAACTGGAGCCTACGGGGTCGTCATGTG
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Coding sequence (CDS) from alignment at CM002470.1:531513..533107+

>rna7136 ID=rna7136|Name=rna7136|organism=Nannochloropsis gaditana|type=CDS|length=644bp|location=Sequence derived from alignment at CM002470.1:531513..533107+ (Nannochloropsis gaditana)
ATGCAGCCGGCGCACAGACACCGGGCCACGCGGGCATCcacggcctcggc
ggcccTGGTTCGGCAACGGGAAGCACACCTGGttcggggagagggggagg
gctctcggggggaggggaggacggccaTAGGCACCGGATTCTCTGTCCCC
GTGCCCGCCTATCCCGCCACGGCGCCCGCAGCGTCCACGTCGTGTGGGCC
GATGCCagggatgaaaggagggcgggcaccgggcaaggaggggcgtgtgc
gaggaggggagagcgggacTGGGCGGCAGGTGTCACGCCGGAGCGGCCAC
GGCGATGATGGGTTTGGAGGGGGTCAGACCAGGTCCGGCGGCATGCAAAG
CCGACGTCGGGCGGCGTCTGCgcgcggaagggaggacatggaggctgggg
aagagggagaggaaggggagtcGCCACCACCTGCCAAACTGGTGccacgg
cgggagggcgggggggagggcgggacagagggcggggcggggaaggggca
ggtgctggtggagggggagggaagaggcgggaaTCCAGGGGGAAGGATGC
ATAGCTTCAAGGTTTCAGGAACGGTGTTTAAACTGGACCGGCGCTATGAG
ATGATCCGGCCAATTGGAACTGGAGCCTACGGGGTCGTCATGTG
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Synonyms
Publications