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Properties
| Property Name | Value |
|---|
| Product | Leucine-rich repeat, cysteine-containing subtype |
| Orig transcript id | gnl|cribi|Naga_100631g2.6901.mrna |
| Orig protein id | gnl|cribi|Naga_100631g2.6901 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002470.1 | supercontig | CM002470.1:528516..531296 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna7135 ID=rna7135|Name=rna7135|organism=Nannochloropsis gaditana|type=mRNA|length=859bp
TCGATCTGGGTTTCATGTCCAATCCGCCGCCTTTGTGATGTAACGCACCG
CCCTCCTTCCCTCCCTTCCTCCCTCCCTCTCTCCTTCCTTCTCCATGGGT
GGCAGGGACAACGGACGGTCTATCGCCTGACGCTGGTCAAGGCGTGGAAT
ATGGCCGAGGTGGACGGCTACGTGGAGCTGATTGGGATGGGCAAGCCGGA
CCTGATCGAGATCAAGGGGGTGACGTACTGTGGGAAGAGCGCCATCTCCA
CGCTGCGAATGGAGGAGAATGTGCCTTGGCACCACGAGGTGCGGGCCTTT
GCCCAAGCTATCGCCGATCGGACGGAAGGCGAATACGAATTCATGGCGGA
GCACGCTCATTCCTGCTGCACGCTTCTGGCGCGGAAAAAGACGTTCTACC
GGGGGGGGAAATGGTACACTTGGATCGACTATGCGAAATTCCACGATTTG
ATCGAGCGGTTCGAGAAGGATGGCACCGAATTCGACGCCTCGGATTATTG
CGCGGAGACCCCCGCATGGGCCCTCAAGGGGGCGCCCGAAGAGGGATTTG
ACCCTGTGGACACGCGTTTCAGGAGGAATAAGGCGGGCGTGGTGGAGGAA
GTACCATACAGGCCAACAGATAGTGGGTGCGGGTAGGGACGGAGATGGGG
GGGGAAGGCGAGGAGGGAGAAAGGAGAGAAGAGGGCCACAAAAGACAAGA
AGCAAAATTGATGGGCTTAGTGAACGTTGATGAGGCATAGGACTAAGGGG
CTAAGCGGTCGTTACTGAAACAGATGGTTTTAGCAGGGAATGTTTGGAAA
GAAGAGTCACGAAAGATATGGGTGGCACAGCACCATCAATTACGTCGTGA
AAAGAATTG back to topprotein sequence of rna7135 >rna7135-protein ID=rna7135-protein|Name=rna7135|organism=Nannochloropsis gaditana|type=polypeptide|length=629bp
MTTRRFSTLQGVDAVERNASFVLTTPSAAGLLTTQNAPLISEALGAGASM
DTAALRNRRGSKAARWSSTTQTTASRTALTLPSTTCAASDTSSLPYSSSS
CLEASPRFLLPSELWKHVMSFLNLDAMPVRSLLDLMGINACAQMRSLDFS
QRRLGACGTRMLAERLRGGACPELDSLNLTACGIGPGGAEALSIAMQTHG
LAPSLRVLRLAGNGMGSRGVTVLAKALKGGAGANLRVLDMDGNKANAVGM
LLMIEALSQAACPVLEELSVGHNTLTDKGLVYLAKTLVDSKLPQLRRLAI
PESAVSTEGIRALARALSLGGGGGLETLDLSDNHLYPQGAEALAIALAQG
AVPALRRLILSRNRIYGDGTAALTEALGQGRCPALTWLDLRGNKIGSKGA
ASVGSLLSRGTCPRLAGLDVGGNYLYAEGTALLASALIQRPQPAMKSLDV
EDNAMTAEGAFLLSEAIRRGAVRGLERLNLGRNGIHAEGVGFLMAALAEG
SCPRLRSLSLRSNELGPFGFAHVAACFQQGGMKGLEFLDLAVNGMSDEPA
TLLLPILLSPVLLPALRDVDMTFNGLDPTRARCQVLALRGGREGGSHGGR
EPNMPMVRLERKSSVPIIRRTQSAPASSG back to topmRNA from alignment at CM002470.1:528516..531296+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna7135 ID=rna7135|Name=rna7135|organism=Nannochloropsis gaditana|type=mRNA|length=2781bp|location=Sequence derived from alignment at CM002470.1:528516..531296+ (Nannochloropsis gaditana)
AGCAGGCCAGCCAGAAGGAGGTAGACACGCAATTCTTTAGATGACCACAA
GGCGATTTTCCACCTTGCAAGGTGTCGACGCGGTGGAAAGAAATGCCTCG
TTCGTCCTCACGACGCCTTCCGCTGCAGGCTTGCTAACAACACAAAATGC
TCCTTTGATCTCGGAAGCTTTGGGCGCAGGGGCAAGCATGGATACAGCCG
CCTTGAGGAACCGACGAGGAAGCAAAGCAGCTCGATGGTCGTCCACGACG
CAAACCACGGCCAGTCGGACCGCACTGACCCTCCCGTCTACCACCTGCGC
CGCCAGTGATACAAGCAGCCTTCCTTattcctcgtcgtcttgtCTGGAGG
CTTCTCCCAGGTTCCTGTTGCCCTCCGAATTGTGGAAGCATGTCATGTCG
TTTTTGAACCTGGACGCCATGCCGGTCCGCAGCCTCTTGGATCTGATGGG
CATCAACGCCTGCGCACAAATGCGCTCCCTCGACTTTTCTCAACGTCGCT
TAGGCGCCTGTGGGACGCGGATGTTGGCGGAGCGATTGCGGGGAGGAGCG
TGTCCTGAGTTAGACTCGTTGAACCTGACAGCGTGCGGAATCgggccagg
gggggcggaggcgttGAGCATTGCCATGCAGACTCATGGGCTGGCGCCAT
CTCTACGGGTGCTGCGCTTGGCAGGGAATGGGATGGGTTCCCGTGGCGTG
ACGGTGCTGGCAAAGGCTttgaaaggaggggcgggggcgaacCTCCGGGT
ACTAGACATGGACGGGAACAAGGCGAACGCGGTGGGCATGCTTTTGATGA
TCGAGGCGCTTAGTCAGGCGGCCTGTCCGGTATTGGAAGAGCTCTCGGTG
GGCCACAATACCTTGACGGACAAGGGTCTGGTGTACCTGGCTAAGACCTT
GGTGGACTCGAAACTCCCCCAGCTCCGTCGTCTGGCCATACCGGAAAGCG
CCGTGAGCACAGAGGGCATCCGCGCATTGGCCCGAGCCCTGAgtctgggc
ggggggggaggcctggAGACATTGGACTTGTCGGACAACCACCTGTACCC
GCAAGGcgccgaggccctggccaTCGCCCTGGCGCAAGGGGCGGTGCCGG
CGTTGCGCCGCTTGATTCTCTCCCGGAACCGGATTTATGGGGACGGTACG
GCCGCCCTGACGGAGGCGCTGGGCCAAGGCCGGTGCCCCGCCTTGACCTG
GTTGGACCTACGTGGGAACAAGATAGGCTCGAAGGGGGCCGCCTCGGTCG
GCTCCCTCTTGTCCCGGGGGACCTGTCCGCGCTTGGCAGGGCTGGACGTG
GGAGGCAATTATTTGTACGCAGAGGGGACGGCGCTGCTGGCGTCTGCCTT
GATCCAACGTCCACAACCGGCGATGAAAagcctggacgtggaggacaacG
CAATGACGGCCGAAGGTGCTTTCCTTTTGTCGGAAGCGATCCGACGGGGG
GCGGTGCGAGGGCTGGAGCGTTTGAATTTGGGCCGGAACGGCATCCATGC
CGAAGGGGTGGGCTTTCTGATGGCGGCGTTGGCCGAAGGCTCCTGTCCGC
GCTTGCGGAGCTTAAGCCTGCGCTCGAACGAGCTCGGCCCCTTTGGCTTT
GCGCACGTCGCCGCGTGCTTCcaacagggagggatgaagggctTGGAGTT
CCTGGATCTGGCGGTGAACGGGATGTCGGACGAGCCTGCCACTttgctcc
tccccatcctcttgagccccgtcctcctcccggccctccgaGACGTGGAC
ATGACCTTCAACGGCCTTGACCCGACTCGGGCCCGGTGCCAAGTGCTGGC
GctgcgcggagggagggaaggagggtcaCATGGAGGTCGGGAGCCGAACA
TGCCGATGGTGCGTCTGGAACGCAAATCTTCCGTGCCCATCATTCGCCGC
ACCCAGTCGGCTCCggcttcctccgggtaggttGCGGTGGTCCCACGGAG
GcagcacaaggaggagggtggaagaaagGGCGAGTTCCCTAGCTCTTTGG
TCTGTTCCACATGGCCACAAAGAGAACGGGAGAAAGCGGATGATCATGTG
TTTTGTGGACAAGGAATACCGATGGAGAGCTTCCGGAGTGAGCAAAGTCG
CGGCCGCAATGGCCTTTAAGACGAGGTGGAAGAGATACAGGGAAAGAGTA
AAGAAAGGGCGTTCGGAACGGAATATCTATATGCGATTAAGTTTGCACAA
CGATTTTTAAAGCGCCCAGATTCTCAAATGGCGACAGTCAAAATAGGAGT
AGAAGTCCTCTGCGTGTCACAGGTGAGGTGCATGATCAAATAGGTTTTAA
ATCAAGAATCTGGTGGTCCTTTATTTGTGAGAAGTAAGCCGCACAGCAAT
AGAGTGATGCTAAAACGCATCATGCCGTGCTTGCGAGGATGTCAGGGGGG
GTGTTTTTTACAAGAAATAGGACACCGCCAAAGCTTGTATGTTGAGGCCT
GACAGCAGGCCAGGGGCAGGAATATATGCCCGAAAGTACTCGAAAAGTCG
GAAAGGAAATTTGGAGCGTGGCGGAAACGGTGGTGATCTGAGCGGAACGA
ATCATCCGGCCAAAATAAGTGCCCCATGGTGCAATAGGAAAACTCCTGCT
ATGTGTCAAAGATTGAGACTTGCATATTCTGGGCAGAAAACAACATTCTG
CCGGTCTATATACTGCGTGTGCTGCATACTACATATGCAAGCGTATAATG
TGTACGGGTAAAAGGGACTATTTCTAACGAAAATAAGAGGAAGATAGCAA
CGAAGGGTCGTCGAGAACAAGCCCTCCCACG back to topCoding sequence (CDS) from alignment at CM002470.1:528516..531296+ >rna7135 ID=rna7135|Name=rna7135|organism=Nannochloropsis gaditana|type=CDS|length=1890bp|location=Sequence derived from alignment at CM002470.1:528516..531296+ (Nannochloropsis gaditana)
ATGACCACAAGGCGATTTTCCACCTTGCAAGGTGTCGACGCGGTGGAAAG
AAATGCCTCGTTCGTCCTCACGACGCCTTCCGCTGCAGGCTTGCTAACAA
CACAAAATGCTCCTTTGATCTCGGAAGCTTTGGGCGCAGGGGCAAGCATG
GATACAGCCGCCTTGAGGAACCGACGAGGAAGCAAAGCAGCTCGATGGTC
GTCCACGACGCAAACCACGGCCAGTCGGACCGCACTGACCCTCCCGTCTA
CCACCTGCGCCGCCAGTGATACAAGCAGCCTTCCTTattcctcgtcgtct
tgtCTGGAGGCTTCTCCCAGGTTCCTGTTGCCCTCCGAATTGTGGAAGCA
TGTCATGTCGTTTTTGAACCTGGACGCCATGCCGGTCCGCAGCCTCTTGG
ATCTGATGGGCATCAACGCCTGCGCACAAATGCGCTCCCTCGACTTTTCT
CAACGTCGCTTAGGCGCCTGTGGGACGCGGATGTTGGCGGAGCGATTGCG
GGGAGGAGCGTGTCCTGAGTTAGACTCGTTGAACCTGACAGCGTGCGGAA
TCgggccagggggggcggaggcgttGAGCATTGCCATGCAGACTCATGGG
CTGGCGCCATCTCTACGGGTGCTGCGCTTGGCAGGGAATGGGATGGGTTC
CCGTGGCGTGACGGTGCTGGCAAAGGCTttgaaaggaggggcgggggcga
acCTCCGGGTACTAGACATGGACGGGAACAAGGCGAACGCGGTGGGCATG
CTTTTGATGATCGAGGCGCTTAGTCAGGCGGCCTGTCCGGTATTGGAAGA
GCTCTCGGTGGGCCACAATACCTTGACGGACAAGGGTCTGGTGTACCTGG
CTAAGACCTTGGTGGACTCGAAACTCCCCCAGCTCCGTCGTCTGGCCATA
CCGGAAAGCGCCGTGAGCACAGAGGGCATCCGCGCATTGGCCCGAGCCCT
GAgtctgggcggggggggaggcctggAGACATTGGACTTGTCGGACAACC
ACCTGTACCCGCAAGGcgccgaggccctggccaTCGCCCTGGCGCAAGGG
GCGGTGCCGGCGTTGCGCCGCTTGATTCTCTCCCGGAACCGGATTTATGG
GGACGGTACGGCCGCCCTGACGGAGGCGCTGGGCCAAGGCCGGTGCCCCG
CCTTGACCTGGTTGGACCTACGTGGGAACAAGATAGGCTCGAAGGGGGCC
GCCTCGGTCGGCTCCCTCTTGTCCCGGGGGACCTGTCCGCGCTTGGCAGG
GCTGGACGTGGGAGGCAATTATTTGTACGCAGAGGGGACGGCGCTGCTGG
CGTCTGCCTTGATCCAACGTCCACAACCGGCGATGAAAagcctggacgtg
gaggacaacGCAATGACGGCCGAAGGTGCTTTCCTTTTGTCGGAAGCGAT
CCGACGGGGGGCGGTGCGAGGGCTGGAGCGTTTGAATTTGGGCCGGAACG
GCATCCATGCCGAAGGGGTGGGCTTTCTGATGGCGGCGTTGGCCGAAGGC
TCCTGTCCGCGCTTGCGGAGCTTAAGCCTGCGCTCGAACGAGCTCGGCCC
CTTTGGCTTTGCGCACGTCGCCGCGTGCTTCcaacagggagggatgaagg
gctTGGAGTTCCTGGATCTGGCGGTGAACGGGATGTCGGACGAGCCTGCC
ACTttgctcctccccatcctcttgagccccgtcctcctcccggccctccg
aGACGTGGACATGACCTTCAACGGCCTTGACCCGACTCGGGCCCGGTGCC
AAGTGCTGGCGctgcgcggagggagggaaggagggtcaCATGGAGGTCGG
GAGCCGAACATGCCGATGGTGCGTCTGGAACGCAAATCTTCCGTGCCCAT
CATTCGCCGCACCCAGTCGGCTCCggcttcctccgggtag back to top
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