rna7132, rna7132 (mRNA) Nannochloropsis gaditana

Overview
Namerna7132
Unique Namerna7132
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length640
Alignment locationCM002470.1:524070..525299 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101114g2.10204.mrna
Orig protein idgnl|cribi|Naga_101114g2.10204
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002470.1supercontigCM002470.1:524070..525299 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101114g2gene6897Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7132rna7132-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23558.1cds7115Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7132 ID=rna7132|Name=rna7132|organism=Nannochloropsis gaditana|type=mRNA|length=640bp
TCGTCGACATGCGGGCCGCCTCCCTTACCTCCTCCTCCTGCCTCGTCATC
CCTCATGCCCACGCCCGGACCGTCCACACCGTCCGTTGGCATCCCTCCGA
GCCCCACCTCCTCCTTTCAGCGGGATTGGACCAGCATTTACGGCTGTGGG
ACCTTCGGAAGGCAGGAGGGAGGGAGGGAGGGAGGGAGGGAGGAGGGGGG
CCCCTCTGCTCCTACTTTGGACACGTCTCCTCACTGGTGCAGAAACAAAG
CGCCATCACCGCCCCCGAATTTTATGACCAAGGACGGTACGTCCTGATCA
CGGGTGAGAAGTCCCGACGCCTCTCTGTCTACGAAACGCTCTCCGCCAAG
CCGATCAGCCGTGGCCAATTGGACGCAGATGTCTCCCAAATGGCGACCAT
GGAAAGTCCGGGTATGGAAACGAAAGGGAAACGGCCGTGCCTATGGGTAG
CCAGCCGTCAGGGCACGCTCGTCAAGCTCTCTCCGTTTTGAGGCGGGGAT
TTCGTGCGACGCAGATTGTGTCCCCGCCGAGTGTGAGGAAAAAGGCGTCG
TGCCTTTTTCCCGGCAGGGCTTGGGTCGATCTACGAGTGTGGTTCGGTTG
TCGGCATAGAAGAAAAGGTACTAGGGGCGCCTCCCACTCG
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protein sequence of rna7132

>rna7132-protein ID=rna7132-protein|Name=rna7132|organism=Nannochloropsis gaditana|type=polypeptide|length=365bp
MPQNKYNTYDYLMAVYDWLYPPPLPPPPPPPTLVERATDQLTQAWAVTKH
YASIYSSLAVPIVASLLLLLLPLFIFLWSNGPPAAVMEATPEESHPEKVT
DEVVGGEREEVEVAAREGVASEGKTPETEWNEEEDGASKETVWKGGEGEG
PVESGKEEGMPKAVVSSPDTSPISSSSLPSAPSSLSSSPLVLEGRGQGGG
AGPEIAGGEPTQEGGSGTEPAPLTTRTLTPRAEAAQEAPEVAGEGCCGGG
REGGREGRCGCQVSEEKGVEPEGGQGPKERRKEGGRERGGIKQVPLRVLV
GSGTGTGRKLAEVFQVGREGGREGRRKGRVEETGAIHLIGVEEYHSTAPS
SLLLPLFPRRKRPSP
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mRNA from alignment at CM002470.1:524070..525299+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7132 ID=rna7132|Name=rna7132|organism=Nannochloropsis gaditana|type=mRNA|length=1230bp|location=Sequence derived from alignment at CM002470.1:524070..525299+ (Nannochloropsis gaditana)
AAAGCAGAACAGCCGAGGTGCTGCATCGCATGATAGACGGGCATGGCTTT
GAATTAGGTCCGGATCCAGCTGTCGTTTGCGCGTTATCAGCGCACGTTGA
AGCCCTCAAGCCTTCTCAAGACGATTCAAAGCATGCCGCAGAACAAATAC
AACACCTATGATTATTTGATGGCGGTGTACGACTGGctctaccctcctcc
cctacctccccctcctcccccccccaccttggtGGAACGGGCTACCGATC
AGCTTACACAGGCATGGGCGGTAACCAAGCACTACGCCTCGATCTACTCC
TCCCTGGCGGTGCCCATCGTTGCGTCTCTCCTACTCCTTTTACTgcccct
cttcatcttcttgtgGTCGAACGGCCCACCGGCCGCTGTTATGGAGGCGA
CCCCTGAGGAAAGCCACCCAGAGAAGGTTACGGATGAGGTAgttgggggg
gaaagggaggaagtggaagtgGCGGCTAGAGAAGGCGTGGCAAGTGAAGG
AAAGACCCCGGAAACGGAGtggaacgaggaggaggatggggcaTCCAAAG
AGACGgtttggaagggaggggagggcgaaggaccTGTTGAaagtgggaaa
gaggaaggtaTGCCAAAGGCGGTCGTTTCTTCGCCGGACACctctcccat
ctcctcctcctccttaccatcggcgccctcctccttgtcctcctccccct
tggtCCTGGAGggtcgagggcaggggggaggtgcgggcCCCGAAATCGCC
GGTGGGGAGCCTacgcaagaaggaggcagtggcacGGAGCCCGCGCCTCT
GACCACACGTACCTTGACGCCCAGAGCAGAGGCCGCGCAGGAAGCGCCCG
aggtggcgggagagggctgttgtggaggagggagggaaggagggagggaa
ggaaggtgcgGGTGCCAAGTTtcggaagagaagggggtggagccGGAGGG
TGGACAGGGGccgaaggaaagaaggaaggaaggagggagggagcgagggg
gcaTCAAGCAGGTGCCGTTGCGGGTATTGGTGGGCTCCGGGACCGGGACC
GGGAGGAAGCTGGCTGAGGTCTtccaggtggggagggagggagggaggga
gggacggaggaagggacgggtggaggagacgggcgCGATACATCTTATCG
GTGTTGAGGAATATCATTCAACCGcaccttcctcgctcctccttcccctc
ttccctcgcagAAAGAGGCCTTCGCCATGA
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Coding sequence (CDS) from alignment at CM002470.1:524070..525299+

>rna7132 ID=rna7132|Name=rna7132|organism=Nannochloropsis gaditana|type=CDS|length=1098bp|location=Sequence derived from alignment at CM002470.1:524070..525299+ (Nannochloropsis gaditana)
ATGCCGCAGAACAAATACAACACCTATGATTATTTGATGGCGGTGTACGA
CTGGctctaccctcctcccctacctccccctcctcccccccccaccttgg
tGGAACGGGCTACCGATCAGCTTACACAGGCATGGGCGGTAACCAAGCAC
TACGCCTCGATCTACTCCTCCCTGGCGGTGCCCATCGTTGCGTCTCTCCT
ACTCCTTTTACTgcccctcttcatcttcttgtgGTCGAACGGCCCACCGG
CCGCTGTTATGGAGGCGACCCCTGAGGAAAGCCACCCAGAGAAGGTTACG
GATGAGGTAgttgggggggaaagggaggaagtggaagtgGCGGCTAGAGA
AGGCGTGGCAAGTGAAGGAAAGACCCCGGAAACGGAGtggaacgaggagg
aggatggggcaTCCAAAGAGACGgtttggaagggaggggagggcgaagga
ccTGTTGAaagtgggaaagaggaaggtaTGCCAAAGGCGGTCGTTTCTTC
GCCGGACACctctcccatctcctcctcctccttaccatcggcgccctcct
ccttgtcctcctcccccttggtCCTGGAGggtcgagggcaggggggaggt
gcgggcCCCGAAATCGCCGGTGGGGAGCCTacgcaagaaggaggcagtgg
cacGGAGCCCGCGCCTCTGACCACACGTACCTTGACGCCCAGAGCAGAGG
CCGCGCAGGAAGCGCCCGaggtggcgggagagggctgttgtggaggaggg
agggaaggagggagggaaggaaggtgcgGGTGCCAAGTTtcggaagagaa
gggggtggagccGGAGGGTGGACAGGGGccgaaggaaagaaggaaggaag
gagggagggagcgagggggcaTCAAGCAGGTGCCGTTGCGGGTATTGGTG
GGCTCCGGGACCGGGACCGGGAGGAAGCTGGCTGAGGTCTtccaggtggg
gagggagggagggagggagggacggaggaagggacgggtggaggagacgg
gcgCGATACATCTTATCGGTGTTGAGGAATATCATTCAACCGcaccttcc
tcgctcctccttcccctcttccctcgcagAAAGAGGCCTTCGCCATGA
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Synonyms
Publications