rna7122, rna7122 (mRNA) Nannochloropsis gaditana

Overview
Namerna7122
Unique Namerna7122
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length713
Alignment locationCM002470.1:497387..499037 -

Link to JBrowse

Properties
Property NameValue
Productleucine-rich repeat containing protein
Orig transcript idgnl|cribi|Naga_100719g1.700.mrna
Orig protein idgnl|cribi|Naga_100719g1.700
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002470.1supercontigCM002470.1:497387..499037 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100719g1gene6887Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23568.1cds7105Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7122rna7122-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7122 ID=rna7122|Name=rna7122|organism=Nannochloropsis gaditana|type=mRNA|length=713bp
ATTCCGTGACGTCCTTCTCCTGTCCAATCGATAAGAATCTTACGCACACT
GTACGCCTATCATCACACAGGCGTGTTTACAACCGTGCTCATTCCGGCCC
GGTAAATACTCCAGCGAAGATGGGTCGCATGCACTCGAAAGGCAAGGGTA
TGGCCTCCTCAGCCATCCCCTACAAGCGCACGCCGCCGTCCTGGGCGAAA
GCCACCGCCAAGGACGTAGAGGAGCACGTATGCAAATTGGCGAAGAAAGG
CTTGACCCCTTCCAACATTGGTGTCATCCTCAGGGATTCGTATGGCATTG
CTCAGGTGAAGGCCGTGACGGGTTCCAAAATCCTCCGGCTCCTGAAGAAG
AACTTGCTGGCCCCTGAGATTCCCGAGGATTTGTACATGCTCATCAAGAA
GGCGGTGGCCGTGCGCAAGCATTTAGAGCGCAACCGCAAAGACAAGGACA
GCAAGTTCCGCCTCATCTTGATCGAGAGTCGCATTCATCGATTGGTAAGG
CGGGTCGGGGACGGAGGCAACGAGGGGGGGGAGGGAAGGAGGGGGGGAGA
TAGGGAGGAGGGGAGGGACCGGGCTTGGGGTGGAAGGAAGGAATGGAGAT
CCAAGTACACATGAATGTTGAGGAAACAGAGACCGGATGATGGAGGGGGA
GGCGAGCATGTAGATATCTCTGCAAGGCATCCGCATTGCCTTGTCTTACC
TGCTCCTCCTCCT
back to top

protein sequence of rna7122

>rna7122-protein ID=rna7122-protein|Name=rna7122|organism=Nannochloropsis gaditana|type=polypeptide|length=523bp
MPEITRDLLRKRAEHNEGILTTLEELALHQEELEGINDILGKTCREIKIL
YLQNNLLPRIENLHHLKCLEYLNVALNNISVVEGLGSCEFLRKLDLTVNF
IDFDALEASITHLASLRHLRDLYFLGNPAQTRPWFEDEEVKCEAVVDKML
DKKQAFTYYIAHRLPQLQCLDGQEITRTTRLLAARVFPTLETRLRVLATR
TRCEKEGKAKKAIKDTESCASSGPVENDGTDGSMPTSHDPETRRAIYLEI
AAQKKEKLERQRADGPKKRDTAREQAVKLAQVQAEEAGQETRPPSSDQGL
DSSLHGDQEARPRQKNEGKWPYTLLDHDDRTATETASAVVGAGERDAGQW
RHWGCVVLDLALPRHLDSSLLDVDVHPYHINVIAKGKLLRLHLPEEVRVS
HSRAIRSKTTGHLQVVMPKLQAKKTRQHRTSAPPSSCHVPSPSAASHEAP
LRSSSPGSQQASASTTLLDVRRQKRNASGPRLSLIEEMLAASKDNIQSPP
PSSVRSSSLPPSPGTLPSASLIE
back to top

mRNA from alignment at CM002470.1:497387..499037-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7122 ID=rna7122|Name=rna7122|organism=Nannochloropsis gaditana|type=mRNA|length=1651bp|location=Sequence derived from alignment at CM002470.1:497387..499037- (Nannochloropsis gaditana)
ACTAAAGGGAAAAATATATGTGGATATGATTAACATGTTTCTATTGATAC
CTATAAGAAGGGATCACTTATAGCCTACTATGCCGGAGATAACTCGGGAT
CTTCTGCGGAAAAGGGCAGAGCACAATGAAGGAATTCTGACCACTTTAGA
AGAATTGGCGCTCCACCAAGAAGAACTTGAGGGAATCAATGATATTCTGG
GTAAAACTTGCCGAGAAATAAAAATTTTATACTTACAAAATAATTTGCTC
CCGCGCATCGAAAATTTGCACCATCTGAAGTGTCTGGAGTACCTAAATGT
AGCTTTGAACAATATCAGCGTCGTAGAAGGTCTTGGATCGTGTGAATTCT
TACGCAAATTAGATTTGACAGTCAATTTCATAGATTTCGACGCTCTAGAA
GCTAGTATCACCCATTTGGCGAGCCTTCGGCACCTGCGAGACTTGTATTT
TTTAGGCAACCCCGCGCAGACGCGTCCGTGGTTTGAGGATGAAGAAGTGA
AATGCGAGGCTGTAGTGGACAAAATGTTAGATAAAAAGCAAGCTTTTACA
TATTACATCGCCCATCGTCTTCCGCAATTGCAATGCCTGGATGGACAAGA
GATTACGCGTACCACACGGTTACTCGCGGCGCGGGTCTTTCCTACCCTGG
AAACGCGACTACGAGTCTTGGCGACCCGGACTCGTTGCGAAAAGGAAGGA
AAAGCCAAGAAAGCGATCAAGGACACGGAATCCTGTGCCAGCTCCGGTCC
GGTCGAAAACGACGGCACAGACGGCAGTATGCCCACAAGCCACGACCCTG
AGACACGACGGGCTATCTACTTGGAAATAGCCGCGCAGAAGAAAGAAAAA
CTCGAGCGGCAGAGGGCCGATGGCCCCAAAAAAAGGGACACCGCCCGCGA
GCAAGCGGTCAAGCTGGCGCAGGTGCAAGCGGAGGAAGCAGGACAAGAAA
CCCGCCCTCCGTCCTCGGACCAGGGTCTAGACTCCTCCCTGCATGGGGAC
CAGGAGGCGAGACCGCGACAGAAGAATGAGGGGAAGTGGCCCTACACCCT
GCTAGACCACGACGATAGAACGGCGACAGAGACTGCGTCTGCCGTTGTCG
GTGCGGGGGAGCGCGACGCCGGGCAATGGCGGCATTGGGGCTGTGTCGTC
CTCGACCTTGCCCTGCCCCGGCACCTGGATTCCTCCCTCCTCGACGTGGA
CGTGCATCCCTACCACATCAACGTCATCGCCAAGGGGAAACTCCTCCGCC
TCCACCTCCCTGAGGAAGTGCGGGTCTCCCACAGCCGGGCGATCAGGAGC
AAAACCACCGGGCACCTCCAAGTGGTCATGCCGAAGCTGCAGGCAAAGAA
GACTCGTCAACACCGGACCTCCGCCCCTCCCTCGTCCTGTCATGTGCCCT
CCCCCTCCGCCGCCTCTCACGAAGCACCGCTCCGTTCATCTTCCCCAGGA
TCACAGCAGGCGAGCGCTTCCACGACGTTGCTCGACGTGCGAAGGCAGAA
GAGGAATGCCAGCGGCCCGCGCCTTTCTCTCATTGAGGAGATGCTGGCAG
CGAGCAAAGACAACATCCAATCTCCTCCTCCCTCCTCTGTGCGTTCTTCT
TCACTGCCTCCCAGTCCTGGGACGCTCCCTTCGGCCAGTCTCATCGAGTA
G
back to top

Coding sequence (CDS) from alignment at CM002470.1:497387..499037-

>rna7122 ID=rna7122|Name=rna7122|organism=Nannochloropsis gaditana|type=CDS|length=1572bp|location=Sequence derived from alignment at CM002470.1:497387..499037- (Nannochloropsis gaditana)
ATGCCGGAGATAACTCGGGATCTTCTGCGGAAAAGGGCAGAGCACAATGA
AGGAATTCTGACCACTTTAGAAGAATTGGCGCTCCACCAAGAAGAACTTG
AGGGAATCAATGATATTCTGGGTAAAACTTGCCGAGAAATAAAAATTTTA
TACTTACAAAATAATTTGCTCCCGCGCATCGAAAATTTGCACCATCTGAA
GTGTCTGGAGTACCTAAATGTAGCTTTGAACAATATCAGCGTCGTAGAAG
GTCTTGGATCGTGTGAATTCTTACGCAAATTAGATTTGACAGTCAATTTC
ATAGATTTCGACGCTCTAGAAGCTAGTATCACCCATTTGGCGAGCCTTCG
GCACCTGCGAGACTTGTATTTTTTAGGCAACCCCGCGCAGACGCGTCCGT
GGTTTGAGGATGAAGAAGTGAAATGCGAGGCTGTAGTGGACAAAATGTTA
GATAAAAAGCAAGCTTTTACATATTACATCGCCCATCGTCTTCCGCAATT
GCAATGCCTGGATGGACAAGAGATTACGCGTACCACACGGTTACTCGCGG
CGCGGGTCTTTCCTACCCTGGAAACGCGACTACGAGTCTTGGCGACCCGG
ACTCGTTGCGAAAAGGAAGGAAAAGCCAAGAAAGCGATCAAGGACACGGA
ATCCTGTGCCAGCTCCGGTCCGGTCGAAAACGACGGCACAGACGGCAGTA
TGCCCACAAGCCACGACCCTGAGACACGACGGGCTATCTACTTGGAAATA
GCCGCGCAGAAGAAAGAAAAACTCGAGCGGCAGAGGGCCGATGGCCCCAA
AAAAAGGGACACCGCCCGCGAGCAAGCGGTCAAGCTGGCGCAGGTGCAAG
CGGAGGAAGCAGGACAAGAAACCCGCCCTCCGTCCTCGGACCAGGGTCTA
GACTCCTCCCTGCATGGGGACCAGGAGGCGAGACCGCGACAGAAGAATGA
GGGGAAGTGGCCCTACACCCTGCTAGACCACGACGATAGAACGGCGACAG
AGACTGCGTCTGCCGTTGTCGGTGCGGGGGAGCGCGACGCCGGGCAATGG
CGGCATTGGGGCTGTGTCGTCCTCGACCTTGCCCTGCCCCGGCACCTGGA
TTCCTCCCTCCTCGACGTGGACGTGCATCCCTACCACATCAACGTCATCG
CCAAGGGGAAACTCCTCCGCCTCCACCTCCCTGAGGAAGTGCGGGTCTCC
CACAGCCGGGCGATCAGGAGCAAAACCACCGGGCACCTCCAAGTGGTCAT
GCCGAAGCTGCAGGCAAAGAAGACTCGTCAACACCGGACCTCCGCCCCTC
CCTCGTCCTGTCATGTGCCCTCCCCCTCCGCCGCCTCTCACGAAGCACCG
CTCCGTTCATCTTCCCCAGGATCACAGCAGGCGAGCGCTTCCACGACGTT
GCTCGACGTGCGAAGGCAGAAGAGGAATGCCAGCGGCCCGCGCCTTTCTC
TCATTGAGGAGATGCTGGCAGCGAGCAAAGACAACATCCAATCTCCTCCT
CCCTCCTCTGTGCGTTCTTCTTCACTGCCTCCCAGTCCTGGGACGCTCCC
TTCGGCCAGTCTCATCGAGTAG
back to top
Synonyms
Publications