rna7112, rna7112 (mRNA) Nannochloropsis gaditana

Overview
Namerna7112
Unique Namerna7112
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1391
Alignment locationCM002470.1:479778..480358 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100610g2.2615.mrna
Orig protein idgnl|cribi|Naga_100610g2.2615
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002470.1supercontigCM002470.1:479778..480358 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100610g2gene6877Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7112rna7112-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23578.1cds7095Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7112 ID=rna7112|Name=rna7112|organism=Nannochloropsis gaditana|type=mRNA|length=1391bp
CCATTCGTGATCCATACACACCGCAGCAGGTAACAAAAATTGTCAAAATT
CTGCACTCTGTTGGCTTCGAACAGAATTTCGGACATCGATATAGAGGAGG
GGCACCCGACACGAGGGTAAGGGAGGGTCTGCGGAGTTCGCGGCGGGGAA
ACGAAATTTCCTCCGTGCTCTGCTCCGGTACTTTCCTTTTTGCGCGGTTC
TTGGGCGTCCTAGGCCAAGCGGCGAGAGCAAACCACACCTTGACAAGTGC
GTGAACTTGATGAGCGTGGAAGCAGCGGCCATACTGGAAAAGAAGACCCA
AGACAGCGCTGCCCCTGCCACGAGTGCCAGTAGCCCCGACATGTCTCCCA
ATCGGGACAAGGACAACGCGGCGGGCGGCACGGAGCACGACGAGCGAAGC
GGCAGTGAAAATGGAGAGGGACTTGAAGCCGTGGGTGGGGAAGGTCCTGC
CATCCAGGTATCGGAAGGGACGCCCGGGGTCAAGAAGGGGTTGGGGGAGG
TGGCCCCCATCACGAACGGGTTCCACGGAGGGAGCACGGCAACGACGACC
GTCAATGGCGCGGTGGAGGGTGAGGCCAAGCCAGGCGCAGCGTCTCGTTT
GCCGTCCGCGGCGGGGACGCACGAGGGGGACGTCAGAGCGGTGCGGCAGG
CCTTAGAACATTACCTCTCATTGGCCTACCTGCGGGCGGACCAAGGCTTT
TTGGCTTCGTACATGAACCCGCAAATGTTCATTCCCCTCTCCGTCCTCGT
CACCCTTCCGGCCCTCGCAGCCCTCTCTCCCTCCCTTTCCCTGGTGGTGG
CGGCGCTCAAGGACCATCCCACGTTGACTTTGAACGAGGAGCAATCCAGC
GTCCGACCCAACATCCACGTACCCCGGACGACGGTAATATTGCGCGAAAT
TAGCAGCGAGACTCCGGAAGAGGAGATCCGCTCCCAGCTTCTGGGATGGG
AGGGGTGCCCCGAGATCAAGAGTCTTCGGAAGGACGTGGGCGACACCTGG
TTTGTAGGTCTGGAGGATGAAGGCGCGGCGAAATGGATTTTGGAAAGATT
GCGCGAACGCCTTTGGCATGGGAAACCCATCCGAGCCCGGCTCAAGTCCG
AGAACGTGGTGAACAAGGCGTTCTTGGCCGGAGAAGGAGTGGGGACGGAC
GGGGGGGACGAAGGTGGGAGGTATGCCCGGCAGGGGGGCGATCCGACGCC
GACTCCACCGGGGCGCAAGGGAGGGAAAGGGGGGGGAGGAGGTGGTGGTG
GGGGTCTTATGAATGGGAGTGTCGCACATCCATACCATGCAGACCAGTAC
CAGGCGACTCCGCAGGCTCACTTACCGCCTCTTCCGTCGCAAGACCTGGA
CCGGGGGGGTCCCTACCCGCCCGCCCTCCGCGGCCCCCCCC
back to top

protein sequence of rna7112

>rna7112-protein ID=rna7112-protein|Name=rna7112|organism=Nannochloropsis gaditana|type=polypeptide|length=161bp
MSTIYKENGSHGRKLIFHQSCTNVTEISLPFVNSSMNSSPQHFNTPRHPW
SVYASSDKIPLYFAWDREEEERGHRAPTHKRGDLLSERGKKLLRRPSSYA
HHVKKSHGIRKGTVARSTGDKVLPTRGRADMSESYVSEYQVRCGVEFCSM
MSYNRAKGTLL
back to top

mRNA from alignment at CM002470.1:479778..480358+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7112 ID=rna7112|Name=rna7112|organism=Nannochloropsis gaditana|type=mRNA|length=581bp|location=Sequence derived from alignment at CM002470.1:479778..480358+ (Nannochloropsis gaditana)
ATGTCAACAATATACAAGGAAAACGGTTCACATGTGCGTACTCATTGTAC
TCATTGTTTCATTGTTCACGTCTTTCTACAGCGTCGCAAGTCTCAGAAGC
TAACGGGAGGTTAGCGCAGCCAATGTAGGGCCGCAAACTTATCTTTCATC
AGAGCTGCACAAACGTGACCGAAATTTCTTTACCTTTTGTCAACTCGAGC
ATGAACTCTTCTCCACAACACTTCAACACACCTCGACACCCTTGGTCTGT
ATATGCCTCCTCAGACAAGATTCCGTTGTACTTTGCTTGGGAtcgtgaag
aagaggagagagggcaccGGGCCCCAACCCACAAACGTGGAGACTTGCTt
tcggaaagaggaaagaaattaCTGAGGCGTCCGAGTTCTTATGCACACCA
TGTGAAAAAAAGTCATGGAATAAGAAAAGGGACAGTGGCCCGGAGTACCG
GAGACAAGGTGCTGCCAACGCGAGGAAGAGCCGACATGTCAGAGTCCTAC
GTCAGTGAATATCAGGTTCGTTGTGGTGTCGAATTTTGCTCCATGATGTC
TTACAATCGTGCAAAAGGCACACTACTTTGA
back to top

Coding sequence (CDS) from alignment at CM002470.1:479778..480358+

>rna7112 ID=rna7112|Name=rna7112|organism=Nannochloropsis gaditana|type=CDS|length=972bp|location=Sequence derived from alignment at CM002470.1:479778..480358+ (Nannochloropsis gaditana)
ATGTCAACAATATACAAGGAAAACGGTTCACATGGCCGCAAACTTATCTT
TCATCAGAGCTGCACAAACGTGACCGAAATTTCTTTACCTTTTGTCAACT
CGAGCATGAACTCTTCTCCACAACACTTCAACACACCTCGACACCCTTGG
TCTGTATATGCCTCCTCAGACAAGATTCCGTTGTACTTTGCTTGGGAtcg
tgaagaagaggagagagggcaccGGGCCCCAACCCACAAACGTGGAGACT
TGCTttcggaaagaggaaagaaattaCTGAGGCGTCCGAGTTCTTATGCA
CACCATGTGAAAAAAAGTCATGGAATAAGAAAAGGGACAGTGGCCCGGAG
TACCGGAGACAAGGTGCTGCCAACGCGAGGAAGAGCCGACATGTCAGAGT
CCTACGTCAGTGAATATCAGGTTCGTTGTGGTGTCGAATTTTGCTCCATG
ATGTCTTACAATCGTGCAAAAGGCACACTACTTTGAATGTCAACAATATA
CAAGGAAAACGGTTCACATGGCCGCAAACTTATCTTTCATCAGAGCTGCA
CAAACGTGACCGAAATTTCTTTACCTTTTGTCAACTCGAGCATGAACTCT
TCTCCACAACACTTCAACACACCTCGACACCCTTGGTCTGTATATGCCTC
CTCAGACAAGATTCCGTTGTACTTTGCTTGGGAtcgtgaagaagaggaga
gagggcaccGGGCCCCAACCCACAAACGTGGAGACTTGCTttcggaaaga
ggaaagaaattaCTGAGGCGTCCGAGTTCTTATGCACACCATGTGAAAAA
AAGTCATGGAATAAGAAAAGGGACAGTGGCCCGGAGTACCGGAGACAAGG
TGCTGCCAACGCGAGGAAGAGCCGACATGTCAGAGTCCTACGTCAGTGAA
TATCAGGTTCGTTGTGGTGTCGAATTTTGCTCCATGATGTCTTACAATCG
TGCAAAAGGCACACTACTTTGA
back to top
Synonyms
Publications