rna7108, rna7108 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna7108
Unique Name	rna7108
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2151
Alignment location	CM002470.1:469174..471452 +

Link to JBrowse

Properties


Property Name	Value
Product	progestin and adipoq receptor family member 4
Orig transcript id	gnl\|cribi\|Naga_100266g3.7300.mrna
Orig protein id	gnl\|cribi\|Naga_100266g3.7300
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002470.1	supercontig	CM002470.1:469174..471452 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100266g3	gene6873	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna7108	rna7108-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM23580.1	cds7091	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002470.1:469174..471452+
coding sequence from alignment at CM002470.1:469174..471452+

mRNA sequence

>rna7108 ID=rna7108|Name=rna7108|organism=Nannochloropsis gaditana|type=mRNA|length=2151bp
GGACAGGAATCCCTTTACGCATCGAAAAGCAAGTCTTACGCCACCGTAGA
AGGTGTAAGACTAGATTTGAGTATGTAAGACGGTCTATTGACTGTGAAAT
AACAACCTGCTGGAGTTCTCCTTCAGACTCATTCCTTCGTATGGCTCAGA
GAAGGGTCCTGGGATAAAGGTGTTATACAAGTGCACATCTCCATCCTTGT
ACGGTTTGTGAATAAATCAATATTAATGCTTCAGCTTTTGGATTATTTTT
ACCACTATCATGAGCCCGCATCTATGTCAGCTTTAAATCCCAATATTAAA
GTGTTCCAACTTTTTTGGTGTAATACATGTTTACATAGGCTACCTTTATC
CGATTTCTAACTGTGGCCCATTCCCCAAATTCAGAGTCTCAATTAGTAAA
CATTCAAAGAAGTACACCGCCTGATAAATCCTGCAAGTTATGGGTCAAAC
TGCGTCGTCCCCGGCAGGAACTGCTACCATGAACTCTCAGCCGCCTGGCA
TTTCCTCCAAGGCCTCTACCCTTGCGATTTCGTCTCCACCTGCTTCGGAT
AAGGTGCAAGCGGCACCCACAAGCTCTGGAAATCTCTCTGCTCAAGCCTC
AACCGCGAGACTTGCCGCCCTTTCCACCAGCGCCAGCGCCACCGCAGGCG
AGGATCCTCAGAACATGTCACTCATCCGTCGGCTTTCCATCAGCGCCGAT
GAGACCACCTCCAAAATGAGCCGGAAACTCTCTAGCATGGCAGAAGAAGG
TCGACAAGCCTTGCGACGGAACAACACGGTCGTCTCCATGGCCTCCACGG
GGGTGCACGTGATCACCGACGCCGGCATCCACCTGCCGCATGAACTCCAC
GTTCCCAACATCGGCCTTTCCCACCCCGCCAACGCCACGTTAGGGGCTAT
AACCGCTGCAGTGGTCGCAGGGTCTCTCGTCAGCCCCATGATCACGGTGC
TGGATTTAGCCATTGTCCGGAGTCAGTTCGACCACATTGGGGTGGGCACT
GCCGTCAAGCGGACGGCCAGTGACTTGTACACAGGGCGGGCGTCGTGGAA
CCCGGCGTTGCGGATCATGGGGGGCGTGTATCTAAGCACCTACATGGCTG
CGAACGGCACGGAGGCCTGGTGCACGGAAAACGGCATCGATTACAAGATT
CCTACTGCCGTGACTACCTCCCTCGTCAACATCGTGGGCGTTTCCCTCAA
GGATAGGGCCTTCGCACGCATGATGAAGAAAAGTGCTTCCTCCTTCCCTC
TCTCCTCCTATCTCCTCTTTGGCATTCGTGACGGGATGACCGTCACCTCC
ACCTTCGTGCTCAAGAACACGGTGCGCGACCACCTGGTGGAAGACTTGAG
CTTCCGCCCGCGGTACGCCGACATTGCCGCCTCCTTCGCCGTCCCCATGC
TGGCGCAGATCCCTTTCACGCCCTTGCATATCCTTGCCATGGATCTATAC
GTGCGAAAAGATGCGACGTGGCTCAGTCGTCTCCAAGAGATCAAGAGCGG
CTACCGGAACGTCTTGCTGGGCCGTGTCATGCGCATCGTGCCCGCCTTCG
GAGTGGGGGGAGTTGTCAACGATATGGTCAAAGAAGCATTCGAAGACGAG
GAAGAAGCCATGTTCCTACACATGGATCGCGGACCCCCGGTGTCTAAACG
GTAAAGGAGGATCGCCTACGACAGGGAAGGGGAAAATATTTTGTAGATAT
GCATATACATGTGTAGCAGACAAGCTTAGCTTGAGGCCGGTATAAGAGGC
AACTTTGGGTTTAGGCCTTTGATCGATAGTGATACATGGGGAGGAAGTTT
CAGTTCCCGAAACAAAGTATTGTACAAGTATTGATCGGCTTTGCGGGGAT
AGGACATGGAAAGGTTCCGGCCGTAGCGAAAATTGCAGAAGGGATGAGTG
CGGTCTGAGCTAGGCGGAAACGCGGGGGCAAATGCCGGCACTACCTCATA
TATGGCGTGATAACTGGCTTATTTGATACACACTTCGCACATGTAGCAAA
CGAATGTACAGCGAATATGAACAAAACGACACCGGTTGCGAGCCCCCTGA
GACAAGGAGGTTGTTACGAAAGCATATGTTCCATTTGGTGAATCAAGAAA
AAGAATGAATCGGCGCACATTTCACTCTGTTTACTTAATTTTCAGAAGTT
T

protein sequence of rna7108

>rna7108-protein ID=rna7108-protein|Name=rna7108|organism=Nannochloropsis gaditana|type=polypeptide|length=377bp
MVRYSTPAYRDSEDDHQGGHQLKILSPLPRVPWDLPPLPSGAGAGVSPPS
VRQCHRDPQDVRHEAATCRPTRSQKRRSVADAKEYTQRPVEEERERSLSS
SQGSRPPRLSVSRHEAPPYLVGNPFILSGYRRCITLREACQGLFYQHNSW
LDTWTSVFSWVHSHVLLFVASYVYGVFRRDWLSAIVFASFYLHVAWIHAP
ASIVCHLVGNAGISQHVYELCLELDYLGIFIASVILAFTQAVFVYPWWGT
LLNVLLAMGLTAYLVTHIRQVVLCHIGRLRMLLEIGSLYQLPLWFQAYQD
CNSPSIPSSLPPSLLCACGMTGSLVVGGLTYALHFPERFAPGKFDVWWNS
HALMHVWINVAMLSEFLFLLHMFLRRS

mRNA from alignment at CM002470.1:469174..471452+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna7108 ID=rna7108|Name=rna7108|organism=Nannochloropsis gaditana|type=mRNA|length=2279bp|location=Sequence derived from alignment at CM002470.1:469174..471452+ (Nannochloropsis gaditana)
AAGTGTGATTAATACCTTTGACAGAACGCAAGTCGTGTGGTTCTTGGAGA
GTGGCATTTATGCATATGTTACTTAGTTTACACTTGTCCAGTCTGGCAAG
AACTCATGATCTTTCTATTTTTTGGGCGGTATATTTGCCGTGTGACGAGC
TTTCAAATTAACGAAGGTTGGATTCCATTCCTGACACGGGCTTCGACGTA
CGACATTTGACACATTGAAACGTACTAAATGTGTAATCAGACTTCCGAAT
TCATTCTACGACAAAATATCACAAATATTAGAGGTGTGACGCTGTTGATC
CTCGTGATTGTATCTCTAACTCAGTAAAATTATATCTTACTGAATCACGA
GACATAATCCAAATATATCGAATCCACCTATACAGATAGATACCGTCCTA
GAACAGCGTCACCATGGTTAGATATTCTACGCCGGCATACAGAGATAGCG
AGGATGATCATCAAGGTGGTCATCAGCTCAAAATACTGTCGCCTTTGCCC
CGTGTCCCCTGGGACCTTCCGCCACTCCCATCGGGTGCTGGCGCGGGTGT
CAGCCCCCCCTCAGTCCGCCAATGTCACCGCGATCCTCAAGATGTCCGTC
ACGAGGCTGCGACTTGTCGTCCCACCCGCAGCCAGAAACGTCGCAGCGTC
GCCGATGCCAAGGAGTATACCCAACGGCCAgtcgaagaggagagggaacg
gAGCCTGTCCTCGTCCCAGGGGAGCCGTCCACCACGTCTGTCGGTCTCCC
GGCACGAGGCTCCACCTTACCTTGTTGGAAACCCCTTTATATTGTCCGGA
TATCGACGATGCATTACCCTGCGGGAGGCGTGTCAAGGCTTGTTTTATCA
GCACAATTCTTGGCTGGATACCTGGACAAGTGTGTTTTCTTGGGTGCATT
CGCACGTCTTACTCTTTGTTGCCTCCTACGTTTATGGCGTCTTCCGCCGT
GACTGGCTTTCTGCGATAGTGTTCGCCTCTTTTTACTTGCACGTAGCGTG
GATCCATGCCCCCGCCTCGATCGTCTGCCACCTGGTCGGCAATGCGGGGA
TCTCGCAGCACGTGTACGAGCTGTGTCTGGAACTGGATTATCTCGGCATC
TTCATCGCCTCCGTCATATTGGCGTTTACCCAGGCGGTTTTTGTCTATCC
ATGGTGGGGCACACTCTTGAACGTGCTGCTGGCCATGGGCTTAACGGCGT
ACTTGGTGAGACCTGGGTGGGGGAAcacgagaagaaagaaggggtggGGC
CAGGGGCGGGAGTCACGCAGCCGAGCGTCCCAGAGGGAAACCAAAGAGGG
TGCATATGAATGGAAAAGGATAACGCGCCGTCATCATGTGGCGTGAGACA
CCAAAGGGAAGTTCTCCGGCCAGGATTTTCCGTCACGGACACTTTCcctc
acccctccttcctccttcccctcgccctccctcccttatcGCATCGGggg
ttcccctccctgttgcTGCCGCTTATCTTTGCGCTGTAGGTGACACACAT
CCGTCAAGTTGTGTTGTGCCACatcggccgcctccgcatGCTTCTGGAGA
TTGGCAGCCTCTACCAGCTTCCACTTTGGTTCCAAGCTTATCAGGACTGC
aactcgccctccatcccttcctccctccctccctccttgctgtGCGCCTG
CGGGATGACGGGTTCACTGGTGGTGGGGGGTCTCACGTAcgccctccatt
ttcccgAGCGTTTCGCACCCGGGAAGTTCGACGTttgggtagggagggag
ggacggagggagggagggagggcgggagggagggggggacagTGCAGGAC
TTCGAGGACATTGATGAATACGTCACGTTGTATTTTTGGAATGCCATGCG
CATACGCTCACATCCtagccttctccttccgttcCCCTGGATTGTCAAAC
CCTCTTGCATGCCTTAGTGGAATAGCCACGCACTCATGCACGTCTGGATC
AACGTGGCCATGCTCTCGgaatttcttttcctcctccacatgtTCCTGCG
TCGGTCctgaggggcggggagggggccggaagGAAGACGACCTCGGGACA
GGCTGGAACCGAGGATGGGATGCTTCAAGGAGAACGCAGGAgagtgagcg
aggaggtcGGCCctgaggggaaaagagagggggcgaggaaggcgaaggag
agggggtagaggagaggcggtggagggatgTAGAAGCGCTGGAGGTGAAG
GTCttctttcgcgccaaaaatgGGTCCGGATGGGACATGTGCCAATAAAT
AGCGACAACTAGGTGAGACGTCCTGACGC

Coding sequence (CDS) from alignment at CM002470.1:469174..471452+

>rna7108 ID=rna7108|Name=rna7108|organism=Nannochloropsis gaditana|type=CDS|length=3402bp|location=Sequence derived from alignment at CM002470.1:469174..471452+ (Nannochloropsis gaditana)
ATGGTTAGATATTCTACGCCGGCATACAGAGATAGCGAGGATGATCATCA
AGGTGGTCATCAGCTCAAAATACTGTCGCCTTTGCCCCGTGTCCCCTGGG
ACCTTCCGCCACTCCCATCGGGTGCTGGCGCGGGTGTCAGCCCCCCCTCA
GTCCGCCAATGTCACCGCGATCCTCAAGATGTCCGTCACGAGGCTGCGAC
TTGTCGTCCCACCCGCAGCCAGAAACGTCGCAGCGTCGCCGATGCCAAGG
AGTATACCCAACGGCCAgtcgaagaggagagggaacggAGCCTGTCCTCG
TCCCAGGGGAGCCGTCCACCACGTCTGTCGGTCTCCCGGCACGAGGCTCC
ACCTTACCTTGTTGGAAACCCCTTTATATTGTCCGGATATCGACGATGCA
TTACCCTGCGGGAGGCGTGTCAAGGCTTGTTTTATCAGCACAATTCTTGG
CTGGATACCTGGACAAGTGTGTTTTCTTGGGTGCATTCGCACGTCTTACT
CTTTGTTGCCTCCTACGTTTATGGCGTCTTCCGCCGTGACTGGCTTTCTG
CGATAGTGTTCGCCTCTTTTTACTTGCACGTAGCGTGGATCCATGCCCCC
GCCTCGATCGTCTGCCACCTGGTCGGCAATGCGGGGATCTCGCAGCACGT
GTACGAGCTGTGTCTGGAACTGGATTATCTCGGCATCTTCATCGCCTCCG
TCATATTGGCGTTTACCCAGGCGGTTTTTGTCTATCCATGGTGGGGCACA
CTCTTGAACGTGCTGCTGGCCATGGGCTTAACGGCGTACTTGGTGACACA
CATCCGTCAAGTTGTGTTGTGCCACatcggccgcctccgcatGCTTCTGG
AGATTGGCAGCCTCTACCAGCTTCCACTTTGGTTCCAAGCTTATCAGGAC
TGCaactcgccctccatcccttcctccctccctccctccttgctgtGCGC
CTGCGGGATGACGGGTTCACTGGTGGTGGGGGGTCTCACGTAcgccctcc
attttcccgAGCGTTTCGCACCCGGGAAGTTCGACGTttggTGGAATAGC
CACGCACTCATGCACGTCTGGATCAACGTGGCCATGCTCTCGgaatttct
tttcctcctccacatgtTCCTGCGTCGGTCctgaATGGTTAGATATTCTA
CGCCGGCATACAGAGATAGCGAGGATGATCATCAAGGTGGTCATCAGCTC
AAAATACTGTCGCCTTTGCCCCGTGTCCCCTGGGACCTTCCGCCACTCCC
ATCGGGTGCTGGCGCGGGTGTCAGCCCCCCCTCAGTCCGCCAATGTCACC
GCGATCCTCAAGATGTCCGTCACGAGGCTGCGACTTGTCGTCCCACCCGC
AGCCAGAAACGTCGCAGCGTCGCCGATGCCAAGGAGTATACCCAACGGCC
AgtcgaagaggagagggaacggAGCCTGTCCTCGTCCCAGGGGAGCCGTC
CACCACGTCTGTCGGTCTCCCGGCACGAGGCTCCACCTTACCTTGTTGGA
AACCCCTTTATATTGTCCGGATATCGACGATGCATTACCCTGCGGGAGGC
GTGTCAAGGCTTGTTTTATCAGCACAATTCTTGGCTGGATACCTGGACAA
GTGTGTTTTCTTGGGTGCATTCGCACGTCTTACTCTTTGTTGCCTCCTAC
GTTTATGGCGTCTTCCGCCGTGACTGGCTTTCTGCGATAGTGTTCGCCTC
TTTTTACTTGCACGTAGCGTGGATCCATGCCCCCGCCTCGATCGTCTGCC
ACCTGGTCGGCAATGCGGGGATCTCGCAGCACGTGTACGAGCTGTGTCTG
GAACTGGATTATCTCGGCATCTTCATCGCCTCCGTCATATTGGCGTTTAC
CCAGGCGGTTTTTGTCTATCCATGGTGGGGCACACTCTTGAACGTGCTGC
TGGCCATGGGCTTAACGGCGTACTTGGTGACACACATCCGTCAAGTTGTG
TTGTGCCACatcggccgcctccgcatGCTTCTGGAGATTGGCAGCCTCTA
CCAGCTTCCACTTTGGTTCCAAGCTTATCAGGACTGCaactcgccctcca
tcccttcctccctccctccctccttgctgtGCGCCTGCGGGATGACGGGT
TCACTGGTGGTGGGGGGTCTCACGTAcgccctccattttcccgAGCGTTT
CGCACCCGGGAAGTTCGACGTttggTGGAATAGCCACGCACTCATGCACG
TCTGGATCAACGTGGCCATGCTCTCGgaatttcttttcctcctccacatg
tTCCTGCGTCGGTCctgaATGGTTAGATATTCTACGCCGGCATACAGAGA
TAGCGAGGATGATCATCAAGGTGGTCATCAGCTCAAAATACTGTCGCCTT
TGCCCCGTGTCCCCTGGGACCTTCCGCCACTCCCATCGGGTGCTGGCGCG
GGTGTCAGCCCCCCCTCAGTCCGCCAATGTCACCGCGATCCTCAAGATGT
CCGTCACGAGGCTGCGACTTGTCGTCCCACCCGCAGCCAGAAACGTCGCA
GCGTCGCCGATGCCAAGGAGTATACCCAACGGCCAgtcgaagaggagagg
gaacggAGCCTGTCCTCGTCCCAGGGGAGCCGTCCACCACGTCTGTCGGT
CTCCCGGCACGAGGCTCCACCTTACCTTGTTGGAAACCCCTTTATATTGT
CCGGATATCGACGATGCATTACCCTGCGGGAGGCGTGTCAAGGCTTGTTT
TATCAGCACAATTCTTGGCTGGATACCTGGACAAGTGTGTTTTCTTGGGT
GCATTCGCACGTCTTACTCTTTGTTGCCTCCTACGTTTATGGCGTCTTCC
GCCGTGACTGGCTTTCTGCGATAGTGTTCGCCTCTTTTTACTTGCACGTA
GCGTGGATCCATGCCCCCGCCTCGATCGTCTGCCACCTGGTCGGCAATGC
GGGGATCTCGCAGCACGTGTACGAGCTGTGTCTGGAACTGGATTATCTCG
GCATCTTCATCGCCTCCGTCATATTGGCGTTTACCCAGGCGGTTTTTGTC
TATCCATGGTGGGGCACACTCTTGAACGTGCTGCTGGCCATGGGCTTAAC
GGCGTACTTGGTGACACACATCCGTCAAGTTGTGTTGTGCCACatcggcc
gcctccgcatGCTTCTGGAGATTGGCAGCCTCTACCAGCTTCCACTTTGG
TTCCAAGCTTATCAGGACTGCaactcgccctccatcccttcctccctccc
tccctccttgctgtGCGCCTGCGGGATGACGGGTTCACTGGTGGTGGGGG
GTCTCACGTAcgccctccattttcccgAGCGTTTCGCACCCGGGAAGTTC
GACGTttggTGGAATAGCCACGCACTCATGCACGTCTGGATCAACGTGGC
CATGCTCTCGgaatttcttttcctcctccacatgtTCCTGCGTCGGTCct
ga

Synonyms

Publications