rna7100, rna7100 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna7100
Unique Name	rna7100
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	835
Alignment location	CM002470.1:444442..446725 -

Link to JBrowse

Properties


Property Name	Value
Product	Ribosomal L11 methyltransferase, PrmA
Orig transcript id	gnl\|cribi\|Naga_100139g13.4751.mrna
Orig protein id	gnl\|cribi\|Naga_100139g13.4751
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002470.1	supercontig	CM002470.1:444442..446725 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100139g13	gene6864	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna7100	rna7100-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM23599.1	cds7083	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002470.1:444442..446725-
coding sequence from alignment at CM002470.1:444442..446725-

mRNA sequence

>rna7100 ID=rna7100|Name=rna7100|organism=Nannochloropsis gaditana|type=mRNA|length=835bp
AGCGATCAGCCACCGTCCTGCAAAGCTGACATAAGTTTACTTTGGTCTCG
GTAGGAGTAATTCATTGCAGTAACACCTATATCCTTATGATGCAGTTAAG
AGGTATAGCGTGGCGAAAGCACGCGGTGGCTAAGCAAGTAATAAAAACTG
CTTGAACGAACGGCAAGGATACATACACCATCCTTCTCGTCCTGTACCAC
AACATGACACAGGAAAGAGATGCATCTCATGTACTATCTGAATGGGGAAG
GCAAACGCGTGTACACATTAAAAAAGGAAGCTCCAGATGGGCAGATCACG
TACTCGGCACACCCAGGTAAGAGACCAAAGCTTTGCCCGAGTAGTGTGCC
AATATGGGAGGGAGGTTTTGACACGCCTTCCGTGGTTCTTCGTGCCATTT
CCAACTGTCGACAAGTCATAGCCACGAGGAGAGATGATTGGCGGGTGAAG
CCTTTCGCGGCTCGTACCATCCCATCCCTCCTGTCTCTCAAGCTGTCATT
CCTCCTGACCCCTCCTTCATATATCCTTCCTCTCGCCCAACAGCTCGCTT
TTCCCCGGACGATAAGTTTTCTAAGCAGCGATTGACTTTGAAAAAACGCT
TCAATCTTCTTCCAACGCAGCAAGCGGAGCGCGTGCTGTGAGAGGAGTCT
TCATTGAAAATGGTTTTGGCGGGCGGAGTATGTAAGGGGTGTCATGCGAG
GCAGGTCGAGCGCCCAAAGCGTCTATGTGTACAGAACAAATAAATTGAGA
CATGCAGATACGCTTTGAAATGCTCTTAGCTTCTCTGGTGCAGATCCACT
GACTGGGTTCTTCCTTTACTTCGCGTCGTGCTTCC

protein sequence of rna7100

>rna7100-protein ID=rna7100-protein|Name=rna7100|organism=Nannochloropsis gaditana|type=polypeptide|length=413bp
MENLAPNGTSNGDNGGKYDSEIEDMTRKTGSIGSMKDDSTIMKGDAGAKA
KDFAEYFCSYAYLYHQKQMLTDHRRMFAYHEAIMKNSSVFEGKTVVDVGT
GTGVLAVWSAKAGAKRVVAVEYTDMAKMARVIVAQNGVDAIVEVQQGSAE
EMEEVEPGSVDIIVSEWMGYFLLRESMLDSLVRVREKYLKKEGGHMFPSH
ATMYWALIEDERERQVKEQEYQQALEDWQTFSHQTKEFYDLDMAGLTAQY
EEEQKEYYLLSSSWAELRAEQVVAEPVVIRRLDLKSCTFEEIKGVPETPF
QFVIPPNDNNEPVYVSGFAGWFTTDFFGNAPGIEPLPHPTTLSTAPDVGY
THWGQQVFHVVVGLELFPGDVVEGTVTLVRQVENARLYHVEVAFQVRRGG
VTSKLVRHKYQMP

mRNA from alignment at CM002470.1:444442..446725-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna7100 ID=rna7100|Name=rna7100|organism=Nannochloropsis gaditana|type=mRNA|length=2284bp|location=Sequence derived from alignment at CM002470.1:444442..446725- (Nannochloropsis gaditana)
AATAAAGAGGTGTCCACTTGACAAGCGTGGCTGAGTGTGCCCTTTTTGCA
TCAAAAGCTAAGGTTTGCGGTCTTGGCGTGGCGAAGCGACTTCCCGTGCT
TGGAAGATACTGCATTGTTCGTCAAAATTCACATGTCTTCTCCGGCGCAT
ACGCTCCCCTATCTCTTAGGTGGGGAATGGAAAATTTAGCCCCAAATGGA
ACGAGCAATGGGGATAATGGCGGCAAATACGATTCGGAAATCGAGGACAT
GACGAGGAAGACGGGAAGTATTGGCAGCATGAAAGACGATTCGACTATCA
TGAAGGGCGACGCAGGGGCAAAGGCTAAGGATTTTGCAGAGTATTTCTGC
TCATATGCGTATTTGTACCATCAGGTAATGCATGTTAAGCATCCTTTCGA
TTAAGGTCCCTCCTTAAGATTCGAGGAAATGGCGTGTTATATTCACATGT
GCTCTTTCCTTGTAATTGGTCTCTCAGAAACAAATGCTTACCGACCATCG
GCGGATGTTTGCGTACCACGAAGCAATCATGAAGAACTCGTCGGTGTTCG
AGGGAAAGACAGTCGTGGATGTGGGTACGGGCACGGGAGTTTTGGCTGTG
TGGAGTGCCAAGGCGGGGGCGAAAAGGGTTGTGGCTGTGGAGTATACGGG
TAAGAGGAAGCATGGAAGGGGGAGAGTTATGGGCCGAGGAATGTAATGCG
ACTGAACTGTTTTTCGAGGGGAGAAGGCACGTTAGCCCTCCACTTGAACC
ACTGCACGGATGTGGTGAAAGCCGATGCCAGCTGTGCCTTCTCCTACGGC
CTCTCTCACCTCTTTTCCTCTCCTTTTCGTGGCTTCTGGTGCTTTAATTA
GACATGGCCAAAATGGCCCGGGTGATCGTGGCGCAGAATGGCGTGGACGC
AATTGTGGAAGTCCAGCAAGGCTCAGCGGAGGAAATGGAAGAGGTGGAGC
CAGGGTCGGTGGACATCATCGTAAGCGAATGGATGGGTTACTTCCTGCTG
CGCGAGAGCATGCTCGACTCTTTGGTACGAGTCCGGGAGAAGTACTTGAA
AAAGGAGGGCGGGCACATGTTTCCCTCCCACGCCACCATGTACTGGGCCC
TGATCGAGGACGAGCGGGAACGACAGGTCAAGGAGCAAGAATACCAGCAG
GCCCTGGAGGACTGGCAAACCTTTTCGCACCAGACCAAAGAATTCTACGA
CTTGGACATGGCCGGGTTGACCGCCCAGTACGAGGAGGAGCAGAAGGAAT
ACTACCTCCTCTCCTCCTCCTGGGCGGAGCTGCGGGCGGAGCAGGTGGTG
GCTGAACCCGTCGTCATCCGGCGCTTGGACTTGAAATCCTGTACCTTCGA
AGAGATCAAAGGGGTGCCCGAAACTCCCTTCCAATTCGTGATCCCCCCCA
ATGACAATAACGAGCCCGTGTACGTGAGTGGTTTTGCCGGTTGGTTCACC
ACGGATTTCTTCGGGAACGCTCCTGGCATCGAACCCTTGCCGCACCCGAC
GACCTTGAGCACGGCGCCCGACGTGGGGTACACGCACTGGGGGCAGCAGG
TCTTCCACGTAGTAGTGGGGTTGGAGCTCTTTCCCGGGGACGTCGTGGAA
GGAACGGTGACCTTGGTGCGACAGGTGGAAAACGCTCGCCTCTACCACGT
GGAGGTGGCGTTTCAAGTTCGTCGGGGGGGCGTCACGAGCAAGCTGGTCA
GACATAAGTACCAGATGCCTTGACGTCACGAATGGAAAAAGAAGCTTGGC
GGAGGTCCTGTACAGATAGTGACCGCAGCAAGGGGGCTGTGAGGACTGTG
GGGTGACAGTGTGCATGGCCAGACCGGTCGACTCGTCTTGCAGCAAAATG
GTAGTGCGTCGACGTGCGGCCCCCACGAAAGGTAAAAATAAAAAGCTTGG
TAACATTCCCGGAAAGTGACTAATCGTAGAGATTTTGGCGGGTGAAGGTA
ACGGATTAAAGTGGTAAAGGTGTAAAATCTTCATGGAATTCTTTTTTAAT
GTATGTGTAGTCAGACCGCTAGTGGGCACCCTTCCTCGAGGCTTAAGGAC
CTGGTATTTGCAAAAGATGGATTTAGGACGGTGAGGGAGGTTTACAGGGA
AAGAGCGTTGCTTGAAAAGATAAATAGAAAGTAAAAGCGTTGAGGGTGTG
ACCCAAGCTGACGAGGAGGAAGCACGACGCGAAGTAAAGGAAGAACCCAG
TCAGTGGATCTGCACCAGAGAAGCTAAGAGCATTTCAAAGCGTATCTGCA
TGTCTCAATTTATTTGTTCTGTACACATAGACGC

Coding sequence (CDS) from alignment at CM002470.1:444442..446725-

>rna7100 ID=rna7100|Name=rna7100|organism=Nannochloropsis gaditana|type=CDS|length=3726bp|location=Sequence derived from alignment at CM002470.1:444442..446725- (Nannochloropsis gaditana)
ACATGGCCAAAATGGCCCGGGTGATCGTGGCGCAGAATGGCGTGGACGCA
ATTGTGGAAGTCCAGCAAGGCTCAGCGGAGGAAATGGAAGAGGTGGAGCC
AGGGTCGGTGGACATCATCGTAAGCGAATGGATGGGTTACTTCCTGCTGC
GCGAGAGCATGCTCGACTCTTTGGTACGAGTCCGGGAGAAGTACTTGAAA
AAGGAGGGCGGGCACATGTTTCCCTCCCACGCCACCATGTACTGGGCCCT
GATCGAGGACGAGCGGGAACGACAGGTCAAGGAGCAAGAATACCAGCAGG
CCCTGGAGGACTGGCAAACCTTTTCGCACCAGACCAAAGAATTCTACGAC
TTGGACATGGCCGGGTTGACCGCCCAGTACGAGGAGGAGCAGAAGGAATA
CTACCTCCTCTCCTCCTCCTGGGCGGAGCTGCGGGCGGAGCAGGTGGTGG
CTGAACCCGTCGTCATCCGGCGCTTGGACTTGAAATCCTGTACCTTCGAA
GAGATCAAAGGGGTGCCCGAAACTCCCTTCCAATTCGTGATCCCCCCCAA
TGACAATAACGAGCCCGTGTACGTGAGTGGTTTTGCCGGTTGGTTCACCA
CGGATTTCTTCGGGAACGCTCCTGGCATCGAACCCTTGCCGCACCCGACG
ACCTTGAGCACGGCGCCCGACGTGGGGTACACGCACTGGGGGCAGCAGGT
CTTCCACGTAGTAGTGGGGTTGGAGCTCTTTCCCGGGGACGTCGTGGAAG
GAACGGTGACCTTGGTGCGACAGGTGGAAAACGCTCGCCTCTACCACGTG
GAGGTGGCGTTTCAAGTTCGTCGGGGGGGCGTCACGAGCAAGCTGGTCAG
ACATAAGTACCAGATGCCTTGAAAACAAATGCTTACCGACCATCGGCGGA
TGTTTGCGTACCACGAAGCAATCATGAAGAACTCGTCGGTGTTCGAGGGA
AAGACAGTCGTGGATGTGGGTACGGGCACGGGAGTTTTGGCTGTGTGGAG
TGCCAAGGCGGGGGCGAAAAGGGTTGTGGCTGTGGAGTATACGGATGGAA
AATTTAGCCCCAAATGGAACGAGCAATGGGGATAATGGCGGCAAATACGA
TTCGGAAATCGAGGACATGACGAGGAAGACGGGAAGTATTGGCAGCATGA
AAGACGATTCGACTATCATGAAGGGCGACGCAGGGGCAAAGGCTAAGGAT
TTTGCAGAGTATTTCTGCTCATATGCGTATTTGTACCATCAGACATGGCC
AAAATGGCCCGGGTGATCGTGGCGCAGAATGGCGTGGACGCAATTGTGGA
AGTCCAGCAAGGCTCAGCGGAGGAAATGGAAGAGGTGGAGCCAGGGTCGG
TGGACATCATCGTAAGCGAATGGATGGGTTACTTCCTGCTGCGCGAGAGC
ATGCTCGACTCTTTGGTACGAGTCCGGGAGAAGTACTTGAAAAAGGAGGG
CGGGCACATGTTTCCCTCCCACGCCACCATGTACTGGGCCCTGATCGAGG
ACGAGCGGGAACGACAGGTCAAGGAGCAAGAATACCAGCAGGCCCTGGAG
GACTGGCAAACCTTTTCGCACCAGACCAAAGAATTCTACGACTTGGACAT
GGCCGGGTTGACCGCCCAGTACGAGGAGGAGCAGAAGGAATACTACCTCC
TCTCCTCCTCCTGGGCGGAGCTGCGGGCGGAGCAGGTGGTGGCTGAACCC
GTCGTCATCCGGCGCTTGGACTTGAAATCCTGTACCTTCGAAGAGATCAA
AGGGGTGCCCGAAACTCCCTTCCAATTCGTGATCCCCCCCAATGACAATA
ACGAGCCCGTGTACGTGAGTGGTTTTGCCGGTTGGTTCACCACGGATTTC
TTCGGGAACGCTCCTGGCATCGAACCCTTGCCGCACCCGACGACCTTGAG
CACGGCGCCCGACGTGGGGTACACGCACTGGGGGCAGCAGGTCTTCCACG
TAGTAGTGGGGTTGGAGCTCTTTCCCGGGGACGTCGTGGAAGGAACGGTG
ACCTTGGTGCGACAGGTGGAAAACGCTCGCCTCTACCACGTGGAGGTGGC
GTTTCAAGTTCGTCGGGGGGGCGTCACGAGCAAGCTGGTCAGACATAAGT
ACCAGATGCCTTGAAAACAAATGCTTACCGACCATCGGCGGATGTTTGCG
TACCACGAAGCAATCATGAAGAACTCGTCGGTGTTCGAGGGAAAGACAGT
CGTGGATGTGGGTACGGGCACGGGAGTTTTGGCTGTGTGGAGTGCCAAGG
CGGGGGCGAAAAGGGTTGTGGCTGTGGAGTATACGGATGGAAAATTTAGC
CCCAAATGGAACGAGCAATGGGGATAATGGCGGCAAATACGATTCGGAAA
TCGAGGACATGACGAGGAAGACGGGAAGTATTGGCAGCATGAAAGACGAT
TCGACTATCATGAAGGGCGACGCAGGGGCAAAGGCTAAGGATTTTGCAGA
GTATTTCTGCTCATATGCGTATTTGTACCATCAGACATGGCCAAAATGGC
CCGGGTGATCGTGGCGCAGAATGGCGTGGACGCAATTGTGGAAGTCCAGC
AAGGCTCAGCGGAGGAAATGGAAGAGGTGGAGCCAGGGTCGGTGGACATC
ATCGTAAGCGAATGGATGGGTTACTTCCTGCTGCGCGAGAGCATGCTCGA
CTCTTTGGTACGAGTCCGGGAGAAGTACTTGAAAAAGGAGGGCGGGCACA
TGTTTCCCTCCCACGCCACCATGTACTGGGCCCTGATCGAGGACGAGCGG
GAACGACAGGTCAAGGAGCAAGAATACCAGCAGGCCCTGGAGGACTGGCA
AACCTTTTCGCACCAGACCAAAGAATTCTACGACTTGGACATGGCCGGGT
TGACCGCCCAGTACGAGGAGGAGCAGAAGGAATACTACCTCCTCTCCTCC
TCCTGGGCGGAGCTGCGGGCGGAGCAGGTGGTGGCTGAACCCGTCGTCAT
CCGGCGCTTGGACTTGAAATCCTGTACCTTCGAAGAGATCAAAGGGGTGC
CCGAAACTCCCTTCCAATTCGTGATCCCCCCCAATGACAATAACGAGCCC
GTGTACGTGAGTGGTTTTGCCGGTTGGTTCACCACGGATTTCTTCGGGAA
CGCTCCTGGCATCGAACCCTTGCCGCACCCGACGACCTTGAGCACGGCGC
CCGACGTGGGGTACACGCACTGGGGGCAGCAGGTCTTCCACGTAGTAGTG
GGGTTGGAGCTCTTTCCCGGGGACGTCGTGGAAGGAACGGTGACCTTGGT
GCGACAGGTGGAAAACGCTCGCCTCTACCACGTGGAGGTGGCGTTTCAAG
TTCGTCGGGGGGGCGTCACGAGCAAGCTGGTCAGACATAAGTACCAGATG
CCTTGAAAACAAATGCTTACCGACCATCGGCGGATGTTTGCGTACCACGA
AGCAATCATGAAGAACTCGTCGGTGTTCGAGGGAAAGACAGTCGTGGATG
TGGGTACGGGCACGGGAGTTTTGGCTGTGTGGAGTGCCAAGGCGGGGGCG
AAAAGGGTTGTGGCTGTGGAGTATACGGATGGAAAATTTAGCCCCAAATG
GAACGAGCAATGGGGATAATGGCGGCAAATACGATTCGGAAATCGAGGAC
ATGACGAGGAAGACGGGAAGTATTGGCAGCATGAAAGACGATTCGACTAT
CATGAAGGGCGACGCAGGGGCAAAGGCTAAGGATTTTGCAGAGTATTTCT
GCTCATATGCGTATTTGTACCATCAG

Synonyms

Publications