rna7096, rna7096 (mRNA) Nannochloropsis gaditana

Overview
Namerna7096
Unique Namerna7096
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2093
Alignment locationCM002470.1:436815..437716 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100139g9.4754.mrna
Orig protein idgnl|cribi|Naga_100139g9.4754
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002470.1supercontigCM002470.1:436815..437716 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100139g9gene6860Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7096rna7096-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23602.1cds7079Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7096 ID=rna7096|Name=rna7096|organism=Nannochloropsis gaditana|type=mRNA|length=2093bp
AGTTAGGCTTTGTGCATATCTCAAGAATGCCTACAACGTAACTCATGCCT
CACTCCGTATGAGGGTGCTAACTAGCTCCCTTGTGGCATGGTAAAATATT
TCATTGACTTTGTGCCTTCTCCTTCTATTTGTATGCTGTTCCAAGCCCTC
TCGACACCCAAATACTCGGGTCGAGGGGTCGGACGGGTTTACCAGACCTG
AGACGACACAAAAACAAGAAGGATGGTCTTCCAGTAAAGTTGTAAAGTAG
CTAGAGCCTTTGATGAGAATAGGGCATTTGACACACGTCCGCATTGTAGA
CGAGACAGATATCAGTCTCCTTACCTGTGAAGACCGCGTCGCATGACATA
CTTTTCCCCGATGTGGTGGTTTTGAAATGCCTGCGTGCAAGTACAGCGTG
GTTGAAGTGCGATTTCCTCGCCAATATTTTGCACGCCTTCCTGCTTCTCA
CAAGTTACCGGATACCTGTGTCATTGTCATTATTATGTTGTAAATCAAAC
GCCTTGGTGAATGTGTTTTTGGGGGTCTTGGTGGAATTTTATCTCCGGCC
GTGCGTTGCCGTGTCTATTAGTTGGCTTCCTATTCCTTTTATTTTAACAT
CGGAGTTGTAGCGCATAGCCCTACAAAGTAAGAAAAAATCCAAAGAAACG
TAAACGTAAACAAAAAATCTCGAACGTAATGTACATTCTCTCTCAAAAAA
CAGGTAACTGTCAAAGTTCTGGCGCTCTTGAGACTCTCTTTGGAGTGACT
TGCGGTGAAGATTTCAAGGGAGGCTTATGTATGATAAAGATGGGAAGGAG
ACCATCGCATATCCGGAGAGCGGCAGCGAGGACAAGATACAGTCAGGCTG
GATGTTTTCATTATTTGAATGCACAGAAACGTCTTTTGCGGGACTATGCT
AGAACGACGTTGGGTTTGGGAGTCCGATGGAGGTCAAGCTTGCAAGGACT
CAAAAGTGCTCGTGGCATTCGACTCGCTACCACACCGTCCAGTCAATGGA
CACAGGATGAACTCGATTGTCTTTACAGAAAATGGGATTTAGATCGTCCG
AATTCTGAAGAGCTGCGCGTGAACGCTTGCATTCGAAGATTGACTCAACA
TGATAAAGTGAAACAGGAAAGTAGCCTTGACACGCGGCCCGGATTCCCGT
GGAACTCGAGGTCTCAGATTCCGAGCTTGGCTTCTCCATCTCTTCGTAGC
ATCAACTTGGACGAAAAGAAGAATTCATGCTCTCTACTTGACATGGAAAG
GGACCAGTATGAATCGGCAGGTCCCGTGCAGCGTGTCTTCTCTCCCATCG
CCTGCTCCGAGCCTCTGCACGGAAAATCAGAGCCGTCAAAACGTCGACCT
CATCTAGTCTCTCGCTCAACCTTAGACGAAGAGCCCATGTGTAAGCATCG
CCGCGGTAACATGCCCGTTTTCGCAGTTGATACAGACGTAGAATTCACTT
CAGAGGATGGCGACGGCCGTGATTACCGTCACGAAGGCCGTATGGACGAC
AATAATTGCGCTTCTGATACACCGACTGATACGCCTATGGGCTCCATTGG
CATTCAAGAAAACACATCGACAATGTCCACGCTACTGCCATGCGCTGGTC
AAGTCCACAATTTTGACGAGAGTGTGATGCTTTTGGATGAAATTCTGGAG
GAGTTTGGGGCGGACCTTCTGCCTTACTTGGAATTTGCCTCGGATGATGA
GGAAATTATGACAGAAACTGGAATGAGGTTGCGCCCGCCTGTTTCAACAC
CAAGACAGGGTCATCCACCTTAAAAGAGAGGTGGAGCAATGAGAGGGGAC
ACATCCACCGTAAAAGAGAGGTGGAGCAATGAGATGGGACGTACCGGGCG
AGACAGTTGATGTCCCTGAAAGCTAGCGAGTCTTAATTGCTTTTCAGAGA
AAGTTTCATTGCAATGACGTCGAGGAGATTGATAAATGGAAAGATACGGT
TGATAGCGATTATATCGAAAGTAACCACTACTTGCTTTCATTTGTGGCAT
GTCCCATCGAGGATTACGATCTGACCTTGTTAGCACCTATTTCCCATTCA
GAGTGCTCTCTTTAACCCTTTTTCACTCCCTGTCAAGCTGAAG
back to top

protein sequence of rna7096

>rna7096-protein ID=rna7096-protein|Name=rna7096|organism=Nannochloropsis gaditana|type=polypeptide|length=201bp
MRTCVKCPILIKGSSYFTTLLEDHPSCFCVVSGLVNPSDPSTRVFGCREG
LEQHTNRRRRHKVNEIFYHATRELAFLRYAQSLTGNLCPNARARQNIWGP
SIRDSFHQPTKKTAIEPLQCHAPTHVLLSSRWNSRSCKTCCKTCDKQWLL
HKKIGGNNLWPTGKEEFGGNKKLLTTCENDMSVDINVDMKRSIRSDAKRR
T
back to top

mRNA from alignment at CM002470.1:436815..437716+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7096 ID=rna7096|Name=rna7096|organism=Nannochloropsis gaditana|type=mRNA|length=902bp|location=Sequence derived from alignment at CM002470.1:436815..437716+ (Nannochloropsis gaditana)
ATGCGGACGTGTGTCAAATGCCCTATTCTCATCAAAGGCTCTAGCTACTT
TACAACTTTACTGGAAGACCATCCTTCTTGTTTTTGTGTCGTCTCAGGTC
TGGTAAACCCGTCCGACCCCTCGACCCGAGTATTTGGGTGTCGAGAGGGC
TTGGAACAGCATACAAatagaaggagaaggcacaaAGTCAATGAAATATT
TTACCATGCCACAAGGGAGCTAGTTAGCACCCTCATACGGAGTGAGGCAT
GAGTTACGTTGTAGGCATTCTTGAGATATGCACAAAGCCTAACTGGAAAC
CTATGCCCTAATGCCCGAGCGAGACAGAACATATGGGGCCCGAGTATCCG
TGACAGTTTCCATCAGCCCACAAAAAAAACGGCTATCGAACGTAAGGAAA
TATGATTCTCCATGCAACTCACTGGTGTCATCGGTTGCGAGGCACATGAC
AATGCGGGGCTTCCCACCATAAAatgagaggacgggggggattGGGACCC
AAGAAACCGACCGCCTCCAATCCTTTCACTTCTGTCTTGAAGGACACACA
GCAGCTACGGCCGATATTTTTTAATCATTAGCCCTTCAATGCCACGCTCC
CAcgcatgtcctcctctcatCAAGATGGAATAGTAGGTCTTGTAAAACAT
GCTGTAAAACATGCGATAAACAGTGGCTGCTGCACAAGAAAATAGGAGGG
AACAATTTGTGGCCAACCGGGAAAGAAGAGTTCGGGTTGGGATAGGGATT
AGGGTAAATCAGTGGTGTAGTGTAGAACGTGTTCTCTTGACAACAAAAGT
GGAAATAAAAAATTATTGACTACGTGCGAGAACGACATGTCTGTGGATAT
AAATGTGGACATGAAAAGAAGCATTCGCTCTGACGCCAAGAGGCGGACTT
GA
back to top

Coding sequence (CDS) from alignment at CM002470.1:436815..437716+

>rna7096 ID=rna7096|Name=rna7096|organism=Nannochloropsis gaditana|type=CDS|length=2424bp|location=Sequence derived from alignment at CM002470.1:436815..437716+ (Nannochloropsis gaditana)
ATGCGGACGTGTGTCAAATGCCCTATTCTCATCAAAGGCTCTAGCTACTT
TACAACTTTACTGGAAGACCATCCTTCTTGTTTTTGTGTCGTCTCAGGTC
TGGTAAACCCGTCCGACCCCTCGACCCGAGTATTTGGGTGTCGAGAGGGC
TTGGAACAGCATACAAatagaaggagaaggcacaaAGTCAATGAAATATT
TTACCATGCCACAAGGGAGCTAGCATTCTTGAGATATGCACAAAGCCTAA
CTGGAAACCTATGCCCTAATGCCCGAGCGAGACAGAACATATGGGGCCCG
AGTATCCGTGACAGTTTCCATCAGCCCACAAAAAAAACGGCTATCGAACC
CCTTCAATGCCACGCTCCCAcgcatgtcctcctctcatCAAGATGGAATA
GTAGGTCTTGTAAAACATGCTGTAAAACATGCGATAAACAGTGGCTGCTG
CACAAGAAAATAGGAGGGAACAATTTGTGGCCAACCGGGAAAGAAGAGTT
CGGTGGAAATAAAAAATTATTGACTACGTGCGAGAACGACATGTCTGTGG
ATATAAATGTGGACATGAAAAGAAGCATTCGCTCTGACGCCAAGAGGCGG
ACTTGAATGCGGACGTGTGTCAAATGCCCTATTCTCATCAAAGGCTCTAG
CTACTTTACAACTTTACTGGAAGACCATCCTTCTTGTTTTTGTGTCGTCT
CAGGTCTGGTAAACCCGTCCGACCCCTCGACCCGAGTATTTGGGTGTCGA
GAGGGCTTGGAACAGCATACAAatagaaggagaaggcacaaAGTCAATGA
AATATTTTACCATGCCACAAGGGAGCTAGCATTCTTGAGATATGCACAAA
GCCTAACTGGAAACCTATGCCCTAATGCCCGAGCGAGACAGAACATATGG
GGCCCGAGTATCCGTGACAGTTTCCATCAGCCCACAAAAAAAACGGCTAT
CGAACCCCTTCAATGCCACGCTCCCAcgcatgtcctcctctcatCAAGAT
GGAATAGTAGGTCTTGTAAAACATGCTGTAAAACATGCGATAAACAGTGG
CTGCTGCACAAGAAAATAGGAGGGAACAATTTGTGGCCAACCGGGAAAGA
AGAGTTCGGTGGAAATAAAAAATTATTGACTACGTGCGAGAACGACATGT
CTGTGGATATAAATGTGGACATGAAAAGAAGCATTCGCTCTGACGCCAAG
AGGCGGACTTGAATGCGGACGTGTGTCAAATGCCCTATTCTCATCAAAGG
CTCTAGCTACTTTACAACTTTACTGGAAGACCATCCTTCTTGTTTTTGTG
TCGTCTCAGGTCTGGTAAACCCGTCCGACCCCTCGACCCGAGTATTTGGG
TGTCGAGAGGGCTTGGAACAGCATACAAatagaaggagaaggcacaaAGT
CAATGAAATATTTTACCATGCCACAAGGGAGCTAGCATTCTTGAGATATG
CACAAAGCCTAACTGGAAACCTATGCCCTAATGCCCGAGCGAGACAGAAC
ATATGGGGCCCGAGTATCCGTGACAGTTTCCATCAGCCCACAAAAAAAAC
GGCTATCGAACCCCTTCAATGCCACGCTCCCAcgcatgtcctcctctcat
CAAGATGGAATAGTAGGTCTTGTAAAACATGCTGTAAAACATGCGATAAA
CAGTGGCTGCTGCACAAGAAAATAGGAGGGAACAATTTGTGGCCAACCGG
GAAAGAAGAGTTCGGTGGAAATAAAAAATTATTGACTACGTGCGAGAACG
ACATGTCTGTGGATATAAATGTGGACATGAAAAGAAGCATTCGCTCTGAC
GCCAAGAGGCGGACTTGAATGCGGACGTGTGTCAAATGCCCTATTCTCAT
CAAAGGCTCTAGCTACTTTACAACTTTACTGGAAGACCATCCTTCTTGTT
TTTGTGTCGTCTCAGGTCTGGTAAACCCGTCCGACCCCTCGACCCGAGTA
TTTGGGTGTCGAGAGGGCTTGGAACAGCATACAAatagaaggagaaggca
caaAGTCAATGAAATATTTTACCATGCCACAAGGGAGCTAGCATTCTTGA
GATATGCACAAAGCCTAACTGGAAACCTATGCCCTAATGCCCGAGCGAGA
CAGAACATATGGGGCCCGAGTATCCGTGACAGTTTCCATCAGCCCACAAA
AAAAACGGCTATCGAACCCCTTCAATGCCACGCTCCCAcgcatgtcctcc
tctcatCAAGATGGAATAGTAGGTCTTGTAAAACATGCTGTAAAACATGC
GATAAACAGTGGCTGCTGCACAAGAAAATAGGAGGGAACAATTTGTGGCC
AACCGGGAAAGAAGAGTTCGGTGGAAATAAAAAATTATTGACTACGTGCG
AGAACGACATGTCTGTGGATATAAATGTGGACATGAAAAGAAGCATTCGC
TCTGACGCCAAGAGGCGGACTTGA
back to top
Synonyms
Publications