rna7095, rna7095 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna7095
Unique Name	rna7095
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1969
Alignment location	CM002470.1:434870..437108 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100139g8.4753.mrna
Orig protein id	gnl\|cribi\|Naga_100139g8.4753
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002470.1	supercontig	CM002470.1:434870..437108 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100139g8	gene6859	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna7095	rna7095-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM23601.1	cds7078	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002470.1:434870..437108-
coding sequence from alignment at CM002470.1:434870..437108-

mRNA sequence

>rna7095 ID=rna7095|Name=rna7095|organism=Nannochloropsis gaditana|type=mRNA|length=1969bp
AGGCCTCTCATAGATGGGCATGGATGCTGCACTGTAGTCACTTCCACTGA
TGATATGTGTGATTTTATTATTAAGCACTGTGTTGTACGCTGAACGTCTG
CCCAACCAACTTCTTCAGGAGTCTTCTGAAAACACCCCTTTTTCCTCACC
CCAGATGGCTTGCATTCCATGCCGAGGTCCAGGCCCGGATCCGGAAGCAG
AATATTCCAAGGTCACCAGTAATCGTCCATTAAAAAATTGGGGCCGCTCC
TATCAATTTACTCCTGCCGTTGTCGTGGAGGCCGCCACCTTTGAGGATGT
GATTGAAGCTGTCCAGGATACAGAAAAGTATCCCACCCCTGTGCGAGCAC
TGGGCAATATTCATACTGTAACTGAGGCCGTGGTAAATGAAGGAGGCACT
GTTGTGCTCATGCGCAAACTCAATCAAATCATTGCAGTGGGCAACGACGA
TGAAGGACAAACGGTGACTGCGCAGGCGGGGACTACCTTGCTGGAGCTTC
ACAATTGGTTGGGGAAGAAAGGACTCGAAATGCTGGTTGCTCCTGAGATT
GGGGATGCTTCTGTGGGCTCTATCGTTGGCAGCGTCACGAAAGATGCGGG
GCCGGGTCCACCCTCTGAGACTGGTTCTTTGTATAAGGCAATCGTGGGGG
TGAAGTACGTAGACCATATGGGCCGCGTGGTGAGGTTATCAAAAAAAGAG
CATGCGGCGGAGCTTGGGCTGTTCAAATGCTCCGAAGGCCTGCTCGGCAT
CGTTTTAGAGGTCACATTCCGCGTATTTCCTGAATCACTCGTGCAATTGA
GTCTGAAGATCATGAATACCAAGGACATGGTCAAAAAAATTAGCACAGAT
ATCTTGTCCAAGACGCGGACAGCTTTCATTCTGGTGCAGCCAGAGCTCTC
CTTTATTGAGACGCGCGAGCCCGCCCCTGAAGGTGCCGAAGCCAGTAGTG
AATTCTGGTGGTCTTTGATAGCCGCTTTCAAGCTTCCCAATTTTCAACAT
GGCCTTGTGTTGTTCCCCTTTCCCTTACTGAAGTTCCTCCCCTACCGTGC
TTGCCTCTACCGTCGCACGCAAGTCAACCATTACGGTGAGCCCGGCCCGA
GGGACAACCGACTCGATTTTTCTTGGTATGAATACCCCTTCGAACGGTTC
GAGGAAGTGGTCACAGCTTTCAACGCTTTTACTTTGGACTTTGCGGAGAG
GCACAATGGGTGGCGCCCCGGGGCCTGTGCCACGTACTTTATGGAACGGA
TGACAAACAAGCCCCACGGGTGGTTTTCCTGCAAAGGTAAAGGGTACGAG
AAAGCTGGTATGTCATTCACTTTGGATCCGATCTTCAACAACCCCAACGA
TCCAAATTGGCGGGCTTTCGTCAAGGAATGCAATGTATTTGCCGTGGCGC
ATGGCGGTCGTGTCGCCCTAACCCAGACGCGGGAGATGGACCGAGACACT
TATCTGGCCTGCCCCGGCCAAGTCCCATTGAAAGAGGCCCCAAACAAACG
GTTTACCACCCCTTTCTTTGCCCGATTTGTGGAACGCGAGGGGGAGGACA
TTGAAATTCCGCTGTGATTGAGCAAGCGAGGGCCGGGTCTGGAAGCTCTG
GGGAATCGAGTCCTTCAGTCAGGAGCATTGAAGCAGGCCGAACCGCGCTT
TCTTTCGCGCAAAAATTGAAAAAATATGACTTGATTGATGTACTGACTTT
GTTAAGCAGAGTTAACACGTGCAAGAAAAAAAAAGCAACAGGGCAACCGT
TTTTAATGAAGAAGGCATTAGCCTCTCGGTAGCGGCCCTGTTGGAGGCCG
CAAAGCAGGTAATCGGCTCACTTCTTTTAACAGGCGTTGTTTTCCGTTAG
CTTTACCTTGTTTTCAATACTATTTTAATTGAAACAGATTTTGGCCTCGA
TGGACTTTTCTTCATTTCCACTTCCCGTTTGCAGAACCCGTGTCTTGTTC
TTGCTCCTCCTTCTTCCCA

protein sequence of rna7095

>rna7095-protein ID=rna7095-protein|Name=rna7095|organism=Nannochloropsis gaditana|type=polypeptide|length=364bp
MYILSQKTGNCQSSGALETLFGVTCGEDFKGGLCMIKMGRRPSHIRRAAA
RTRYSQAGCFHYLNAQKRLLRDYARTTLGLGVRWRSSLQGLKSARGIRLA
TTPSSQWTQDELDCLYRKWDLDRPNSEELRVNACIRRLTQHDKVKQESSL
DTRPGFPWNSRSQIPSLASPSLRSINLDEKKNSCSLLDMERDQYESAGPV
QRVFSPIACSEPLHGKSEPSKRRPHLVSRSTLDEEPMCKHRRGNMPVFAV
DTDVEFTSEDGDGRDYRHEGRMDDNNCASDTPTDTPMGSIGIQENTSTMS
TLLPCAGQVHNFDESVMLLDEILEEFGADLLPYLEFASDDEEIMTETGMR
LRPPVSTPRQGHPP

mRNA from alignment at CM002470.1:434870..437108-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna7095 ID=rna7095|Name=rna7095|organism=Nannochloropsis gaditana|type=mRNA|length=2239bp|location=Sequence derived from alignment at CM002470.1:434870..437108- (Nannochloropsis gaditana)
AGTTAGGCTTTGTGCATATCTCAAGAATGCCTACAACGTAACTCATGCCT
CACTCCGTATGAGGGTGCTAACTAGCTCCCTTGTGGCATGGTAAAATATT
TCATTGACTTTGTGCCTTCTCCTTCTATTTGTATGCTGTTCCAAGCCCTC
TCGACACCCAAATACTCGGGTCGAGGGGTCGGACGGGTTTACCAGACCTG
AGACGACACAAAAACAAGAAGGATGGTCTTCCAGTAAAGTTGTAAAGTAG
CTAGAGCCTTTGATGAGAATAGGGCATTTGACACACGTCCGCATTGTAGA
CGAGACAGATATCAGTCTCCTTACCTGTGAAGACCGCGTCGCATGACATA
CTTTTCCCCGATGTGGTGGTTTTGAAATGCCTGCGTGCAAGTACAGCGTG
GTTGAAGTGCGATTTCCTCGCCAATATTTTGCACGCCTTCCTGCTTCTCA
CAAGTTACCGGATACCTGTGTCATTGTCATTATTATGTTGTAAATCAAAC
GCCTTGGTGAATGTGTTTTTGGGGGTCTTGGTGGAATTTTATCTCCGGCC
GTGCGTTGCCGTGTCTATTAGTTGGCTTCCTATTCCTTTTATTTTAACAT
CGGAGTTGTAGCGCATAGCCCTACAAAGTAAGAAAAAATCCAAAGAAACG
TAAACGTAAACAAAAAATCTCGAACGTAATGTACATTCTCTCTCAAAAAA
CAGGTAACTGTCAAAGTTCTGGCGCTCTTGAGACTCTCTTTGGAGTGACT
TGCGGTGAAGATTTCAAGGGAGGCTTATGTATGATAAAGATGGGAAGGAG
ACCATCGCATATCCGGAGAGCGGCAGCGAGGACAAGATACAGTCAGGCTG
GATGTTTTCATTATTTGAATGCACAGAAACGTCTTTTGCGGGACTATGCT
AGAACGACGTTGGGTTTGGGAGTCCGATGGAGGTCAAGCTTGCAAGGACT
CAAAAGTGCTCGTGGCATTCGACTCGCTACCACACCGTCCAGTCAATGGA
CACAGGATGAACTCGATTGTCTTTACAGAAAATGGGATTTAGATCGTCCG
AATTCTGAAGAGCTGCGCGTGAACGCTTGCATTCGAAGATTGACTCAACA
TGATAAAGTGAAACAGGAAAGTAGCCTTGACACGCGGCCCGGATTCCCGT
GGAACTCGAGGTCTCAGATTCCGAGCTTGGCTTCTCCATCTCTTCGTAGC
ATCAACTTGGACGAAAAGAAGAATTCATGCTCTCTACTTGACATGGAAAG
GGACCAGTATGAATCGGCAGGTCCCGTGCAGCGTGTCTTCTCTCCCATCG
CCTGCTCCGAGCCTCTGCACGGAAAATCAGAGCCGTCAAAACGTCGACCT
CATCTAGTCTCTCGCTCAACCTTAGACGAAGAGCCCATGTGTAAGCATCG
CCGCGGTAACATGCCCGTTTTCGCAGTTGATACAGACGTAGAATTCACTT
CAGAGGATGGCGACGGCCGTGATTACCGTCACGAAGGTACAGAGATGTGT
GTGACCGCATGAGAGCCACGTGGTGTTTATTCCATCCCCTTTCCTTAATG
GTGTTTGGGATATATCGGATTTTTATTCGCTCTTTCATCTGGCTTACATG
ATATTCTCCACGATGTGTCATGTCGCGCGCAGGCCGTATGGACGACAATA
ATTGCGCTTCTGATACACCGACTGATACGCCTATGGGCTCCATTGGCATT
CAAGAAAACACATCGACAATGTCCACGCTACTGCCATGCGCTGGTCAAGT
CCACAATTTTGACGAGAGTGTGATGCTTTTGGATGAAATTCTGGAGGAGT
TTGGGGCGGACCTTCTGCCTTACTTGGAATTTGCCTCGGATGATGAGGAA
ATTATGACAGAAACTGGAATGAGGTTGCGCCCGCCTGTTTCAACACCAAG
ACAGGGTCATCCACCTTAAAAGAGAGGTGGAGCAATGAGAGGGGACACAT
CCACCGTAAAAGAGAGGTGGAGCAATGAGATGGGACGTACCGGGCGAGAC
AGTTGATGTCCCTGAAAGCTAGCGAGTCTTAATTGCTTTTCAGAGAAAGT
TTCATTGCAATGACGTCGAGGAGATTGATAAATGGAAAGATACGGTTGAT
AGCGATTATATCGAAAGTAACCACTACTTGCTTTCATTTGTGGCATGTCC
CATCGAGGATTACGATCTGACCTTGTTAGCACCTATTTCCCATTCAGAGT
GCTCTCTTTAACCCTTTTTCACTCCCTGTCAAGCTGAAG

Coding sequence (CDS) from alignment at CM002470.1:434870..437108-

>rna7095 ID=rna7095|Name=rna7095|organism=Nannochloropsis gaditana|type=CDS|length=2190bp|location=Sequence derived from alignment at CM002470.1:434870..437108- (Nannochloropsis gaditana)
GCCGTATGGACGACAATAATTGCGCTTCTGATACACCGACTGATACGCCT
ATGGGCTCCATTGGCATTCAAGAAAACACATCGACAATGTCCACGCTACT
GCCATGCGCTGGTCAAGTCCACAATTTTGACGAGAGTGTGATGCTTTTGG
ATGAAATTCTGGAGGAGTTTGGGGCGGACCTTCTGCCTTACTTGGAATTT
GCCTCGGATGATGAGGAAATTATGACAGAAACTGGAATGAGGTTGCGCCC
GCCTGTTTCAACACCAAGACAGGGTCATCCACCTTAAATGTACATTCTCT
CTCAAAAAACAGGTAACTGTCAAAGTTCTGGCGCTCTTGAGACTCTCTTT
GGAGTGACTTGCGGTGAAGATTTCAAGGGAGGCTTATGTATGATAAAGAT
GGGAAGGAGACCATCGCATATCCGGAGAGCGGCAGCGAGGACAAGATACA
GTCAGGCTGGATGTTTTCATTATTTGAATGCACAGAAACGTCTTTTGCGG
GACTATGCTAGAACGACGTTGGGTTTGGGAGTCCGATGGAGGTCAAGCTT
GCAAGGACTCAAAAGTGCTCGTGGCATTCGACTCGCTACCACACCGTCCA
GTCAATGGACACAGGATGAACTCGATTGTCTTTACAGAAAATGGGATTTA
GATCGTCCGAATTCTGAAGAGCTGCGCGTGAACGCTTGCATTCGAAGATT
GACTCAACATGATAAAGTGAAACAGGAAAGTAGCCTTGACACGCGGCCCG
GATTCCCGTGGAACTCGAGGTCTCAGATTCCGAGCTTGGCTTCTCCATCT
CTTCGTAGCATCAACTTGGACGAAAAGAAGAATTCATGCTCTCTACTTGA
CATGGAAAGGGACCAGTATGAATCGGCAGGTCCCGTGCAGCGTGTCTTCT
CTCCCATCGCCTGCTCCGAGCCTCTGCACGGAAAATCAGAGCCGTCAAAA
CGTCGACCTCATCTAGTCTCTCGCTCAACCTTAGACGAAGAGCCCATGTG
TAAGCATCGCCGCGGTAACATGCCCGTTTTCGCAGTTGATACAGACGTAG
AATTCACTTCAGAGGATGGCGACGGCCGTGATTACCGTCACGAAGGCCGT
ATGGACGACAATAATTGCGCTTCTGATACACCGACTGATACGCCTATGGG
CTCCATTGGCATTCAAGAAAACACATCGACAATGTCCACGCTACTGCCAT
GCGCTGGTCAAGTCCACAATTTTGACGAGAGTGTGATGCTTTTGGATGAA
ATTCTGGAGGAGTTTGGGGCGGACCTTCTGCCTTACTTGGAATTTGCCTC
GGATGATGAGGAAATTATGACAGAAACTGGAATGAGGTTGCGCCCGCCTG
TTTCAACACCAAGACAGGGTCATCCACCTTAAATGTACATTCTCTCTCAA
AAAACAGGTAACTGTCAAAGTTCTGGCGCTCTTGAGACTCTCTTTGGAGT
GACTTGCGGTGAAGATTTCAAGGGAGGCTTATGTATGATAAAGATGGGAA
GGAGACCATCGCATATCCGGAGAGCGGCAGCGAGGACAAGATACAGTCAG
GCTGGATGTTTTCATTATTTGAATGCACAGAAACGTCTTTTGCGGGACTA
TGCTAGAACGACGTTGGGTTTGGGAGTCCGATGGAGGTCAAGCTTGCAAG
GACTCAAAAGTGCTCGTGGCATTCGACTCGCTACCACACCGTCCAGTCAA
TGGACACAGGATGAACTCGATTGTCTTTACAGAAAATGGGATTTAGATCG
TCCGAATTCTGAAGAGCTGCGCGTGAACGCTTGCATTCGAAGATTGACTC
AACATGATAAAGTGAAACAGGAAAGTAGCCTTGACACGCGGCCCGGATTC
CCGTGGAACTCGAGGTCTCAGATTCCGAGCTTGGCTTCTCCATCTCTTCG
TAGCATCAACTTGGACGAAAAGAAGAATTCATGCTCTCTACTTGACATGG
AAAGGGACCAGTATGAATCGGCAGGTCCCGTGCAGCGTGTCTTCTCTCCC
ATCGCCTGCTCCGAGCCTCTGCACGGAAAATCAGAGCCGTCAAAACGTCG
ACCTCATCTAGTCTCTCGCTCAACCTTAGACGAAGAGCCCATGTGTAAGC
ATCGCCGCGGTAACATGCCCGTTTTCGCAGTTGATACAGACGTAGAATTC
ACTTCAGAGGATGGCGACGGCCGTGATTACCGTCACGAAG

Synonyms

Publications