rna7088, rna7088 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna7088
Unique Name	rna7088
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1697
Alignment location	CM002470.1:421882..425381 -

Link to JBrowse

Properties


Property Name	Value
Product	dual specificity protein phosphatase 10
Orig transcript id	gnl\|cribi\|Naga_100139g3.4755.mrna
Orig protein id	gnl\|cribi\|Naga_100139g3.4755
Gbkey	mRNA
Note	encoded by transcript variant 1; alternatively spliced

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002470.1	supercontig	CM002470.1:421882..425381 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100139g3	gene6855	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM23603.1	cds7071	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna7088	rna7088-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002470.1:421882..425381-
coding sequence from alignment at CM002470.1:421882..425381-

mRNA sequence

>rna7088 ID=rna7088|Name=rna7088|organism=Nannochloropsis gaditana|type=mRNA|length=1697bp
ACCGAATCCCTTGTTCAAGACTGGTCTTCGCTTGCTTTGCCCAATATGTA
CCACTGTCGCCTATGTTTGTGAGGTTTTCTCACAATATGTTTTTCTTCGT
CGTGTCAGTTGGTTCATCTTTTTGAACCCCCCCCACCCTCCCCCCAAAAA
TCGAGCCAGCCCTGCTTCCTTTCCCACATGCACACGATCGTAAGGTCTTT
CTTTCACGCCGAGGGCTTTGCCCGGCATTCGCACCACTTTTGTTCCCACA
AATTTCCCTTCTCTCACAATGTAGGGAGTCTAAATTCACGCGCAAGCGAA
GCAGTACCGGAATCAAAACCTTTAATCAGTGTGGGCGCCGTCATCTCTAT
TCGGTAGTGCCCTCGCGCCCATTCCTTCGAAGCCTTCACAGCACTGAAGT
GCCACAAAAGTCAATAAGAGCCGAAGCATCAAGATAACTTCACGCACCAC
AAATGTCTGCGTCTTTGCGCCGACCCTTTTTCCTCCATCTTGGCCCCTTT
CTAGTCGTCGCCTCGTTACTCCTTCATTGCTATCCCACTGCCGGGGTGAC
CGCTCTGGTTTGCCCGAAAGAAATGCAAGGCCCCGCCGATCGAGCCGTAG
GCGAGGAGTGCGGTGGTCCTTGCAACCATTTGGGGACGTGCGCGCCAGGA
TTAGTGTGTAAACCTACGACTGCTCTTGCCGTGGGAAAGTTCGAAGGCGG
GCATGGAGGTGACCAAGCGAGCGGCGTGGACACGGCCCATGCGACCCCGT
CTTTGTCCGCGAAACTGGCTGATATCATGGACCATTCCTTAGGGCGTGCG
CCGCGTGGGGTGTGTGTGCAAGAGGAGAGCGGAGGGGTGGACGAGAGGGA
AGCAGCCGTGGAAGGCCGGGCGGAGGTGCGAGATATGGCAGCTACCTCAC
GGAGGACGCAGTCGTTGCGGGAAGAGGAGGAGCGCGCGGTTATCATGGGG
AAAGACGATTTGCTTCGACCCGAAAGCACGCTGCATTCGTCCCAGGCACA
CGCGGCCGACGTGGACGAGGGCGATGCCCGGGCAGGCCGTCCCGGAGGTC
GCCAAGGAAGCTGCCCGGGATGCCCGCACCAGGTGGAGGTATCAGACCCC
GAGGTCGTGGCCGCCGCCGATGCTGCAGTGGAATTGATGGGTGCCAAGGG
GGATCTGGGGCAGGGCTCGGAGGGAAAAGGGTGGCGGGTGGGGAGGATCG
TGAGTGCGACCTCTCAGGTGGTTTCGGGCATCCGCTACCGTATTGTCTTG
CTGGCTGTCAAGGCGGGGGGAGGAGAAGGCACGTGGGACGTGGACATAGT
CTCGCAGCCGTGGATGACGCCCAAGTACACTTTGATTAAAGCGACGAGGG
TCACGAAGGCGGGGGGCGCCGGAGACGCCGGGGAGAGGAGGGGGGAAGTA
GAAGGGTGAGATGGAGGGGAGGAGGCCTGATAATTTGGTGGTCAAAGTAG
AAGATGAAATGATGAAATGAGAAGCAAGAAAGTGGAATGAACATCAGAAA
GGGGGCCCTTCTGTGAGCATAAAAGACAAGAAACGGTCAAGCAGAGCGAG
AAGAAGCGACCAGGGATGAGGAGCTGTGCAGGCTGGGTGGACGGGTCGGG
GCGGTAGGAGGGTGTATGTAGGGGAAAGTGAGCATTCAGGGACAACACAA
CGAAGAAAAAGCAATACTGGCCAAAGGCCCTATGGAGCCACCTGGGT

protein sequence of rna7088

>rna7088-protein ID=rna7088-protein|Name=rna7088|organism=Nannochloropsis gaditana|type=polypeptide|length=567bp
MVRPSRPAPLMLEEPFMLFSGLGGVSTPHAPEDDDPSTTQESTILSPCSR
SLSRNKELAPVSPAEAPVGASPRHGLDTTPDEIFNQQEGQGGNPSNPTES
VEDARNRSSSQSSGSSACRKICTEGLEEDKEKAAETASPPLTSKRSTFGF
FKRSNSASSALMDLPVDNTLSAGTPPASSYRCPGLKVKKRGFPALILTPR
GNSSHPATSLLPPRPLPPLPPSRSVNGTHSGSISTPNGGGKPLSSPPSLL
NLMARLRRRQPATAIEETSCCSSSTSTSSSSSSIIMTPGEISSREDPTAA
SRSSSRRVLTVDTGPRCSSVSGPMALSTMDFHYDGSKILDYLYVGGEHIP
SQDALAETFNITHIVNTTVKDYYPHHPVSRGDYCQLFLLDALSEELSETK
METAFQMIDRARAGGHACLVHCRNGMSRSTSVVIAYLMRHFKMPLLEAFN
FVRERRPCTSPNPSFMRQLAAFERAWLGVSGNTLDVDHYADDRFASIRDL
AVGPGRGGEEEEVVEEEEEEEEEEGRLAGLEVGEEDSSGGWDVGCPLSGE
EGQGWAEGEGEEEVSKR

mRNA from alignment at CM002470.1:421882..425381-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna7088 ID=rna7088|Name=rna7088|organism=Nannochloropsis gaditana|type=mRNA|length=3500bp|location=Sequence derived from alignment at CM002470.1:421882..425381- (Nannochloropsis gaditana)
CTGTACTAGCACGGCGTGTCATTCCGACATCCTCCCCTATGCAACTTTCT
TTGTCCCACCGCACGCATTTGCGATATCACGTGGGGCAGGTGCATGTCAA
TCGCGCATTTTTTCCCATGTTGCACTCGTTTTCCATTGTTTTTTGGGACG
GGTTGCACGGCGAGCAGCAGCTGGCAAAGATCAGACCCTGCCTTCTGGTC
GGTTGGTTCCATGGAAGTGCCACACGTGGGGTATCGAGGCCGTGAAAGGC
AACTCGACCTTCTGTGCCGTGCTTCGAAGGGTCGTGAACGCCGTTTTTTC
CACGATGGATGGACTTTGTGGATGTGAGCTGGCCTTGAAGGCTTGCGCTC
GGCGCGGGGGGCCTGCTGAGTGCCACCTCACTCACTGGACTATGACATAA
AGGTGGGCCCTCGTCACCACCCAGGGCGGTTGCTGCAGGATCCAACGCGG
TCGAAACCCATTTTCTCTGTGAGCATAAGTTCTTTGTTGCGTGGTTTCCC
ATGCGTGCGCCTTGCATGGGTGTAAGTGTCTAGTTTTGTGTGAAGTATTT
TTTTTTGCAGTCGGAATGATGAGGAGAATGCAAGCACAGAATCCTCTCAC
TCGAGACCACCTGAACATTCAACCCCGTGTTCAATGCAGTAGTGTGCGAC
CCTCTCACGCCATCTTCTTTCCCTTCTTGTCCTCCATATACATACACACA
TGTTTCAAAATACATCTGTCTGCTTTTTGGTTCTTAGTGGCCAGCACCAG
AATCGGTAAACGCTACCTTTGAGTATCGTCGTCGCTGTCGTCGACCATAA
GCGTACCTTTCTCGCGGGCCCTAACCAAGCGACACATAAAAAACAATCAT
CACCAACTGGAACAGTACGGTCTTGCCTTGTATGGTCCGTCCTTCTCGTC
CGGCCCCCCTCATGTTGGAGGAGCCGTTCATGCTTTTCTCCGGGCTTGGC
GGCGTTAGCACTCCTCACGCACCTGAAGACGACGATCCAAGCACAACACA
AGAATCAACCATACTGAGCCCATGTTCGCGCTCCTTGAGCCGGAACAAAG
AGTTAGCGCCGGTGTCTCCGGCGGAAGCTCCTGTGGGGGCGTCACCCAGA
CACGGTCTTGATACGACTCCCGACGAGATATTTAACCAACAGGAAGGACA
GGGAGGCAATCCGAGCAACCCCACGGAGAGCGTGGAGGACGCTCGAAACA
GAAGTAGCAGCCAAAGCAGCGGCAGCAGCGCGTGCAGAAAAATATGCACA
GAAGGATTAGAGGAAGACAAAGAAAAAGCTGCCGAGACAGCCAGCCCCCC
TCTCACGTCCAAGCGCTCGACCTTTGGCTTTTTCAAACGTTCCAACTCCG
CCTCGTCCGCGCTGATGGACTTGCCAGTCGACAACACCCTCTCCGCAGGG
ACCCCGCCAGCATCGTCATACCGGTGTCCGGGCCTCAAGGTCAAGAAAAG
GGGCTTCCCTGCCCTCATCCTGACGCCTCGCGGCAACTCCTCCCATCCAG
CTACCTCCCTCCTGCCTCCCCGACCCTTGCCTCCCCTTCCCCCCAGCCGC
AGCGTCAATGGCACCCACAGTGGCAGTATCTCCACGCCAAACGGCGGCGG
CAAGCCTCTTTCCTCCCCTCCCTCCCTCCTGAACCTGATGGCCCGCCTGC
GCAGGCGGCAACCAGCCACAGCCATCGAGGAGACCTCCTGCTGCTCCTCC
TCCACCTCCACCTCCTCCTCTTCCTCCTCCATCATCATGACGCCGGGCGA
GATCAGCAGCCGGGAAGACCCGACCGCGGCGAGCCGAAGCAGCAGCAGGC
GCGTGCTCACGGTGGACACCGGGCCGCGATGCTCGAGTGTATCCGGGCCC
ATGGCCCTCTCTACCATGGACTTCCACTACGACGGGAGCAAGATCCTCGA
CTACCTGTACGTGGGCGGGGAGCACATCCCCAGCCAGGACGCGCTCGCTG
AGACATTCAACATCACGCACATCGTCAACACCACGGTCAAGGACTACTAT
CCCCATCACCCTGTGTCCAGGGGCGACTACTGCCAGCTCTTCTTGCTGGA
TGCGCTCTCGGAGGAACTCTCCGAGACGAAGATGGAGACGGCGTTCCAAA
TGATTGATCGGGCCCGGGCGGGGGGGCACGCCTGCCTGGTGCATTGTCGG
AATGGGATGTCGCGGTCGACCTCGGTGGTGATAGCCTACCTGATGCGTCA
CTTCAAGATGCCCTTGCTGGAGGCCTTCAATTTCGTCCGAGAGCGTCGGC
CTTGCACAAGCCCGAACCCGTCCTTCATGCGGCAATTGGCCGCGTTCGAG
CGGGCCTGGCTGGGGGTGAGTGGGAACACGCTGGACGTGGACCACTACGC
CGACGATCGGTTCGCGTCCATACGCGACCTGGCCGTGGGGCCAGGGAGAG
GGGGCGAGGAAGAGGAGGTTGTGGAGGAGGAGGAAGAGGAAGAGGAAGAG
GAGGGGAGGCTGGCGGGTCTGGAGGTGGGGGAAGAGGATTCAAGTGGAGG
GTGGGATGTGGGGTGTCCTTTGTCGGGGGAGGAGGGACAGGGATGGGCGG
AGGGCGAGGGCGAGGAAGAGGTTTCGAAGAGGTAAAAGGAACTGGGCGGG
AGAGACAGCGGGCGACATGCAGGCATGGGCGGATACGGAAACAGGGAAGG
ATCGATGCGCAAGGAGCAGCGAGATGCTGGCCACAAGGACATGAGAGCGG
GCTGGGGCCCGTGGGGAGGGCTGGTTGCCTAAGAGGATGCCTGTCGCGGG
TAGAATTTACGAAATTCGTGTACATTACTTCTTTCCGCTTCTGGGAGAAG
AACGGGGTAATTCAGGGGGAGTGCCCCAGCAGCAAGAGGATCAGCAGTGC
TCGTACAGAGGGAGCATGTCCACTAAGGAACAGTAACGTGACGAAGGATT
CATAATTCGCAACGCGTTTCCTCGTCGTGGGGGAGCGGAAGACTCTAGCT
TTATACAACAGAGAAAAGATGTGCAAAGGAGGCACGGGAAGACGAAGATA
TAAAGGTGTCGTGGGCCACTTTGGTCGGCGATTGACACGGAGTGTGGCAA
TATGTTGGAAAGGATAGGCAAGGAATTGCGAGTACCCTGTGGCTTTAGAA
GTGATTTCCATTTTTCTGCCACATGTAGAGGGATTCAAATGTTAAGACAA
TTCTGATGTGTAACGAAAAGAGTGCATTGAGTTAGGAATACGTGTGTGCA
GAGACATGCGCGCCACTACGCAATTGATTAGATCAAAGGCACTTAACTAC
ACCTTGAATAATTCCCATTGGACGCCGTTTAAGTCTATCGTGTGTGTAAA
TAGGCGACAAAGAGATATGGGTACTTAAAAGAGAACTTGGCACGCATGGG
AGGCATTCTAATCGAATGTGAGCTGAGAGATGAGAGAGATAAGAGCAGAC
ACCGCCAGTCAATTTGAAAACAAATGAAGCTAAGGAGCACATTCAGCAGG
AGATACCCGAGTCGTGCTCTTTCTTTTCGTATTTCCTACTGTTGCACGGG

Coding sequence (CDS) from alignment at CM002470.1:421882..425381-

>rna7088 ID=rna7088|Name=rna7088|organism=Nannochloropsis gaditana|type=CDS|length=1704bp|location=Sequence derived from alignment at CM002470.1:421882..425381- (Nannochloropsis gaditana)
ATGGTCCGTCCTTCTCGTCCGGCCCCCCTCATGTTGGAGGAGCCGTTCAT
GCTTTTCTCCGGGCTTGGCGGCGTTAGCACTCCTCACGCACCTGAAGACG
ACGATCCAAGCACAACACAAGAATCAACCATACTGAGCCCATGTTCGCGC
TCCTTGAGCCGGAACAAAGAGTTAGCGCCGGTGTCTCCGGCGGAAGCTCC
TGTGGGGGCGTCACCCAGACACGGTCTTGATACGACTCCCGACGAGATAT
TTAACCAACAGGAAGGACAGGGAGGCAATCCGAGCAACCCCACGGAGAGC
GTGGAGGACGCTCGAAACAGAAGTAGCAGCCAAAGCAGCGGCAGCAGCGC
GTGCAGAAAAATATGCACAGAAGGATTAGAGGAAGACAAAGAAAAAGCTG
CCGAGACAGCCAGCCCCCCTCTCACGTCCAAGCGCTCGACCTTTGGCTTT
TTCAAACGTTCCAACTCCGCCTCGTCCGCGCTGATGGACTTGCCAGTCGA
CAACACCCTCTCCGCAGGGACCCCGCCAGCATCGTCATACCGGTGTCCGG
GCCTCAAGGTCAAGAAAAGGGGCTTCCCTGCCCTCATCCTGACGCCTCGC
GGCAACTCCTCCCATCCAGCTACCTCCCTCCTGCCTCCCCGACCCTTGCC
TCCCCTTCCCCCCAGCCGCAGCGTCAATGGCACCCACAGTGGCAGTATCT
CCACGCCAAACGGCGGCGGCAAGCCTCTTTCCTCCCCTCCCTCCCTCCTG
AACCTGATGGCCCGCCTGCGCAGGCGGCAACCAGCCACAGCCATCGAGGA
GACCTCCTGCTGCTCCTCCTCCACCTCCACCTCCTCCTCTTCCTCCTCCA
TCATCATGACGCCGGGCGAGATCAGCAGCCGGGAAGACCCGACCGCGGCG
AGCCGAAGCAGCAGCAGGCGCGTGCTCACGGTGGACACCGGGCCGCGATG
CTCGAGTGTATCCGGGCCCATGGCCCTCTCTACCATGGACTTCCACTACG
ACGGGAGCAAGATCCTCGACTACCTGTACGTGGGCGGGGAGCACATCCCC
AGCCAGGACGCGCTCGCTGAGACATTCAACATCACGCACATCGTCAACAC
CACGGTCAAGGACTACTATCCCCATCACCCTGTGTCCAGGGGCGACTACT
GCCAGCTCTTCTTGCTGGATGCGCTCTCGGAGGAACTCTCCGAGACGAAG
ATGGAGACGGCGTTCCAAATGATTGATCGGGCCCGGGCGGGGGGGCACGC
CTGCCTGGTGCATTGTCGGAATGGGATGTCGCGGTCGACCTCGGTGGTGA
TAGCCTACCTGATGCGTCACTTCAAGATGCCCTTGCTGGAGGCCTTCAAT
TTCGTCCGAGAGCGTCGGCCTTGCACAAGCCCGAACCCGTCCTTCATGCG
GCAATTGGCCGCGTTCGAGCGGGCCTGGCTGGGGGTGAGTGGGAACACGC
TGGACGTGGACCACTACGCCGACGATCGGTTCGCGTCCATACGCGACCTG
GCCGTGGGGCCAGGGAGAGGGGGCGAGGAAGAGGAGGTTGTGGAGGAGGA
GGAAGAGGAAGAGGAAGAGGAGGGGAGGCTGGCGGGTCTGGAGGTGGGGG
AAGAGGATTCAAGTGGAGGGTGGGATGTGGGGTGTCCTTTGTCGGGGGAG
GAGGGACAGGGATGGGCGGAGGGCGAGGGCGAGGAAGAGGTTTCGAAGAG
GTAA

Synonyms

Publications