rna7087, rna7087 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna7087
Unique Name	rna7087
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3254
Alignment location	CM002470.1:420092..421788 -

Link to JBrowse

Properties


Property Name	Value
Product	Proteinase inhibitor I25, cystatin
Orig transcript id	gnl\|cribi\|Naga_100139g2.4748.mrna
Orig protein id	gnl\|cribi\|Naga_100139g2.4748
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002470.1	supercontig	CM002470.1:420092..421788 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100139g2	gene6854	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM23596.1	cds7070	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna7087	rna7087-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002470.1:420092..421788-
coding sequence from alignment at CM002470.1:420092..421788-

mRNA sequence

>rna7087 ID=rna7087|Name=rna7087|organism=Nannochloropsis gaditana|type=mRNA|length=3254bp
TGCATTGACCCGCCTCGCTGTCCACCCTTCGCCCACGCCTGTCCTACTTT
CTCCTCTTCCCTTCCAACCGACCTCGGTCCCTCCAGCGAAAGATCTTCCG
AAGCATGGGCCGATGGGTTTCCTACTACAGGGACCTTCCCCCCACCGACC
TGGTGGAAAACCGCATCCTCTTGGACGCCTTCGCCGTCATCGCACAAGGA
GCGGCTCGGAACGGGCACGAACGGCTCTTCCAATCGGCGGTCGACCTCTT
GATCGATGTCTTTGTTGCCTACGACTTCTCCCACCCTGAGGGCATCTCCC
TCGACGCCTGTCTTCCCCTCGCGCAATTTTTGGTCCCAAACGTCTTCGCC
CTACAACCCACCTACCTCGCCTCCCTCCGCCCGTCCTCCCTCCCTCCCTC
CGCCGGCCCCTCCCCCCACGGGGACACGGACACGGCCAAAGGCATCTGCA
TGGTCTTCGTCGAGATGGCGCTCTCCTACCTCCCCCTCCTCCTCTCTCCG
GAGCCCTACCAGCAGGAGGCCCTCCTCCGCCTCCTCCTCCTCGTCACCTC
CCACCCCGAGCCTTCCGTCTCCGAGTACGCCCTCCCCTTTTGGTACGAGC
TGGCCAAGGCGGGAGGCCGGAGGGCTGGGGACGGGGGAAGCCCGGGCGTG
GGGGAGAGGTACGCGAGCATTCTCCAGGAGCTGTTGCGGGCCCTGGTCGA
AAGGATGGTGTATCCGCCCGAGGCCGGGGAGGGCGGGAGAGAGGGCGGTG
GATGGGACGAGGAGGAGAAGGAGGAATTTGATGACTTTCGTTACAAGCTG
GGCGATGCCGTCAAGGACGTCAGCTCCCTGCTCGGGCCAAGTCCCTGCCT
TCACGCACTCGCCCACTTGCTGCACGCCACCCTCTCCACCCCCACGCCCT
CCCTCCCTCCCTCCCATCCTCCCTCCTGGCGTCAGACCGAAGCCTGTCTC
TGGGCCTTGCGCTCCCTCGCCCCTTCCCTCCCCCTCCCTCCCTCCCTCCC
TTCCTCTGCCCCTCTCGACACCGACACCACCACCGCCCTCACCGTCGTAC
CTCAACTCCTCTCCCTCCTCCTCTCTCAAGCCTCCCCATCCTCCCCCTCC
GCCCTCTCCCTCCCCCCCCTTCTCCGCGTCACCATCCACCACGTCGTGGG
CCGCCTGGCGCCCTTCCTCCCGCCCCACCCCCCGTCCTCCACCACCGACC
TCCTCCCCTTCGCCTATCCACTCCTCCTCGCCGACCTGGGCTCCCCCGCC
GCCTCCGCCTCCGCCGCCCGGGCCCTACAGGAGGTCCTCTTGGCCTGTGG
GCGGGTGACGGGCCCCGACTCGTTGCCCCCATTGACGCTATTTGGACAGA
TCTACACGGCCTCTTTGGCCGGACAGCTCTCTTTTGGGAACGAGACCCTA
GTGGTGGAGGGGATCCTGGAAGGAGTAGTGGCTCGGATGGGCGGGGAGGG
CGGGGGCGAGGGCGGGAGGGAGGGCGGGAGGGAGGAAGTGGTGCAGCGCA
TGGTGGGGATGGTGGGGGAGCATTTGGGGGACGTGGTCCGGAAGGAGCAG
CAAGAGAGGAGGCGAGAGGGCGGGGGAGAGGGGGGTGGGAAGAGGCAGTT
GATGGTCGAGCAAGATTTGGAGCGTTTGACGACGATCGTCCGGGTCTCCG
AGCCCCGCCTGAGTGGGGAGGAGGGGGGGAGGGAGGGAGGGAGAGAGGGA
GGGAGGGACGTCGCCTGCGGTGGGGGCCGTGCAGAGCCTTTTGCCCGTCT
TACAGGCCATCTACGACGAGTATAAGGACAAGCCGGACGTGTTGGAGAAG
GTGCGTCGCGCCCATTACCTCTCCCTTCCTCCCTTCCTCCCTCCCTCTCT
CCCACCTTCCCTCCCTCCTCCCTTCTTGACCAAGGATTGTGGTGTCAACC
CTGCAGCCTCAGCTTTGTGTTTTGGGGATGTGCACCGTTTTTCTTTCCCA
GTGGCTTTCATCACCGTCATCGACCCCATCTCTTTCCCTCCTTCCCTCCT
TCCCTCGTTGCCTCCTTCCTTCCTTCCCTCCGCGTCCCTCCCCCCTAGCT
CTGTCGCTTCTTCAAACACGCCTTCCGCACCGCCCGCCCCAAGACCGCCT
TCTACCCCCTGCTCGACCCTCTCGTCCGCTTCCTCCTCCAGGGCCTGGCC
GAGACCCGGCAGTCCTCTTTTCTCTACTCCATCTCCTACGTGGTCAGCGA
GTTCGGGCCCCGCCGGCACAGCCACAACGACAGCGCGGACGCTCGGGCGG
GGAATGGGAGCGGGCAACAGGAGCTTCTGGCGCGCCTGCTCTTGCTGCTT
GAGGAGGCCTCCCAGATCGTTTTTTCCTCTGTGTTGCGGAACGGCGAGGA
TTTCACGAACCACCCCGACATGGTGGAAGAGTACTTTTACTTTGCCTCCA
AGTTCTTCGCCCACTGCCCTGTCCCGTTGATGAACCGCTGCCGTCGCCAG
GAGATGCTGGTGCCCACCCTGCCGCAGACGCTCTTGCAGTCCGCCGTCGT
CGGCTTCGTGACCCTCCAGCATAAAGATGCCCAGCGGGCCATCATGCACT
TTCTCGAAACCTTCCTTTCAGCCGGTCAGCCCTCCCTCCCCCATTCCGCC
CCTACTTCCTCCGCCGCCCCCAACGGTTTTTCCTCTTCGGTGCTTTCCGA
CACGGCGGGTATGCAAGAGTGGATTCTTTCCCTGCTTCACTCCCCTTCGC
TTCCTCCCGCCACGACTCCTCCCGAGCAGCATCCCCTCCCTCCCACCCTG
GGCCCCGCCCTTCTTTTCAAGCTATTCCACGGCCTTGCAGGGGAGAGTGC
GCGCGAGCTGGTGAATCACCCAGAGAAGCCTTGCCTGTGCGGAGTCTTGT
CGCGTGCTGCCGAGACCATTCCTCCCCCCAGCCTTCGGGAATGGGCCTAC
GCCGCCTTGCAAGCCGCCGTGCCGGAAGTGTTGGCCACGCCGGAGGAGAA
GCAAGAGGTGTGGGAGGCTGTGTGTCACTTTGGGGAGAGAGGAAGGGAGG
GAGGGAGGGAGGGCAGGGACAGGCGAGAGATCTTTGCGGTGGTGGGGAAG
TTCGCGGAGAAGTGCCGGGAAAGAGAGAGGAAGACGAGGAGGAAAGGCAG
GGTATGAGGGTGTTGAAAAGAAAACACCAAACTTATGCAACATTATGAAA
ACAAAAGCTTTGAATGCGCAATGGTGGTCAATCACCCTGTAGACACGATT
GAAGCCCCTGCATTCGCACCTAAAGTAAAGAAACGTATCACTAGACCCGC
CGGC

protein sequence of rna7087

>rna7087-protein ID=rna7087-protein|Name=rna7087|organism=Nannochloropsis gaditana|type=polypeptide|length=318bp
MSASLRRPFFLHLGPFLVVASLLLHCYPTAGVTALVCPKEMQGPADRAVG
EECGGPCNHLGTCAPGLVCKPTTALAVGKFEGGHGGDQASGVDTAHATPS
LSAKLADIMDHSLGRAPRGVCVQEESGGVDEREAAVEGRAEVRDMAATSR
RTQSLREEEERAVIMGKDDLLRPESTLHSSQAHAADVDEGDARAGRPGGR
QGSCPGCPHQVEVSDPEVVAAADAAVELMGAKGDLGQGSEGKGWRVGRIV
SATSQVVSGIRYRIVLLAVKAGGGEGTWDVDIVSQPWMTPKYTLIKATRV
TKAGGAGDAGERRGEVEG

mRNA from alignment at CM002470.1:420092..421788-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna7087 ID=rna7087|Name=rna7087|organism=Nannochloropsis gaditana|type=mRNA|length=1697bp|location=Sequence derived from alignment at CM002470.1:420092..421788- (Nannochloropsis gaditana)
ACCGAATCCCTTGTTCAAGACTGGTCTTCGCTTGCTTTGCCCAATATGTA
CCACTGTCGCCTATGTTTGTGAGGTTTTCTCACAATATGTTTTTCTTCGT
CGTGTCAGTTGGTTCATCTTTTTGAACCCCCCCCACCCTCCCCCCAAAAA
TCGAGCCAGCCCTGCTTCCTTTCCCACATGCACACGATCGTAAGGTCTTT
CTTTCACGCCGAGGGCTTTGCCCGGCATTCGCACCACTTTTGTTCCCACA
AATTTCCCTTCTCTCACAATGTAGGGAGTCTAAATTCACGCGCAAGCGAA
GCAGTACCGGAATCAAAACCTTTAATCAGTGTGGGCGCCGTCATCTCTAT
TCGGTAGTGCCCTCGCGCCCATTCCTTCGAAGCCTTCACAGCACTGAAGT
GCCACAAAAGTCAATAAGAGCCGAAGCATCAAGATAACTTCACGCACCAC
AAATGTCTGCGTCTTTGCGCCGACCCTTTTTCCTCCATCTTGGCCCCTTT
CTAGTCGTCGCCTCGTTACTCCTTCATTGCTATCCCACTGCCGGGGTGAC
CGCTCTGGTTTGCCCGAAAGAAATGCAAGGCCCCGCCGATCGAGCCGTAG
GCGAGGAGTGCGGTGGTCCTTGCAACCATTTGGGGACGTGCGCGCCAGGA
TTAGTGTGTAAACCTACGACTGCTCTTGCCGTGGGAAAGTTCGAAGGCGG
GCATGGAGGTGACCAAGCGAGCGGCGTGGACACGGCCCATGCGACCCCGT
CTTTGTCCGCGAAACTGGCTGATATCATGGACCATTCCTTAGGGCGTGCG
CCGCGTGGGGTGTGTGTGCAAGAGGAGAGCGGAGGGGTGGACGAGAGGGA
AGCAGCCGTGGAAGGCCGGGCGGAGGTGCGAGATATGGCAGCTACCTCAC
GGAGGACGCAGTCGTTGCGGGAAGAGGAGGAGCGCGCGGTTATCATGGGG
AAAGACGATTTGCTTCGACCCGAAAGCACGCTGCATTCGTCCCAGGCACA
CGCGGCCGACGTGGACGAGGGCGATGCCCGGGCAGGCCGTCCCGGAGGTC
GCCAAGGAAGCTGCCCGGGATGCCCGCACCAGGTGGAGGTATCAGACCCC
GAGGTCGTGGCCGCCGCCGATGCTGCAGTGGAATTGATGGGTGCCAAGGG
GGATCTGGGGCAGGGCTCGGAGGGAAAAGGGTGGCGGGTGGGGAGGATCG
TGAGTGCGACCTCTCAGGTGGTTTCGGGCATCCGCTACCGTATTGTCTTG
CTGGCTGTCAAGGCGGGGGGAGGAGAAGGCACGTGGGACGTGGACATAGT
CTCGCAGCCGTGGATGACGCCCAAGTACACTTTGATTAAAGCGACGAGGG
TCACGAAGGCGGGGGGCGCCGGAGACGCCGGGGAGAGGAGGGGGGAAGTA
GAAGGGTGAGATGGAGGGGAGGAGGCCTGATAATTTGGTGGTCAAAGTAG
AAGATGAAATGATGAAATGAGAAGCAAGAAAGTGGAATGAACATCAGAAA
GGGGGCCCTTCTGTGAGCATAAAAGACAAGAAACGGTCAAGCAGAGCGAG
AAGAAGCGACCAGGGATGAGGAGCTGTGCAGGCTGGGTGGACGGGTCGGG
GCGGTAGGAGGGTGTATGTAGGGGAAAGTGAGCATTCAGGGACAACACAA
CGAAGAAAAAGCAATACTGGCCAAAGGCCCTATGGAGCCACCTGGGT

Coding sequence (CDS) from alignment at CM002470.1:420092..421788-

>rna7087 ID=rna7087|Name=rna7087|organism=Nannochloropsis gaditana|type=CDS|length=957bp|location=Sequence derived from alignment at CM002470.1:420092..421788- (Nannochloropsis gaditana)
ATGTCTGCGTCTTTGCGCCGACCCTTTTTCCTCCATCTTGGCCCCTTTCT
AGTCGTCGCCTCGTTACTCCTTCATTGCTATCCCACTGCCGGGGTGACCG
CTCTGGTTTGCCCGAAAGAAATGCAAGGCCCCGCCGATCGAGCCGTAGGC
GAGGAGTGCGGTGGTCCTTGCAACCATTTGGGGACGTGCGCGCCAGGATT
AGTGTGTAAACCTACGACTGCTCTTGCCGTGGGAAAGTTCGAAGGCGGGC
ATGGAGGTGACCAAGCGAGCGGCGTGGACACGGCCCATGCGACCCCGTCT
TTGTCCGCGAAACTGGCTGATATCATGGACCATTCCTTAGGGCGTGCGCC
GCGTGGGGTGTGTGTGCAAGAGGAGAGCGGAGGGGTGGACGAGAGGGAAG
CAGCCGTGGAAGGCCGGGCGGAGGTGCGAGATATGGCAGCTACCTCACGG
AGGACGCAGTCGTTGCGGGAAGAGGAGGAGCGCGCGGTTATCATGGGGAA
AGACGATTTGCTTCGACCCGAAAGCACGCTGCATTCGTCCCAGGCACACG
CGGCCGACGTGGACGAGGGCGATGCCCGGGCAGGCCGTCCCGGAGGTCGC
CAAGGAAGCTGCCCGGGATGCCCGCACCAGGTGGAGGTATCAGACCCCGA
GGTCGTGGCCGCCGCCGATGCTGCAGTGGAATTGATGGGTGCCAAGGGGG
ATCTGGGGCAGGGCTCGGAGGGAAAAGGGTGGCGGGTGGGGAGGATCGTG
AGTGCGACCTCTCAGGTGGTTTCGGGCATCCGCTACCGTATTGTCTTGCT
GGCTGTCAAGGCGGGGGGAGGAGAAGGCACGTGGGACGTGGACATAGTCT
CGCAGCCGTGGATGACGCCCAAGTACACTTTGATTAAAGCGACGAGGGTC
ACGAAGGCGGGGGGCGCCGGAGACGCCGGGGAGAGGAGGGGGGAAGTAGA
AGGGTGA

Synonyms

Publications