rna7083, rna7083 (mRNA) Nannochloropsis gaditana

Overview
Namerna7083
Unique Namerna7083
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2407
Alignment locationCM002470.1:408318..409456 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_102115g1.10698.mrna
Orig protein idgnl|cribi|Naga_102115g1.10698
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002470.1supercontigCM002470.1:408318..409456 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_102115g1gene6850Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23607.1cds7066Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7083rna7083-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7083 ID=rna7083|Name=rna7083|organism=Nannochloropsis gaditana|type=mRNA|length=2407bp
CTCTCTCGGGTACAGACGCCCCGCGTGCCCCAGGTCGACCGAGCTGCCTC
TCTCCGGCCTTCTCTATCGGCCAAACGACCGATTTTCCCCGGCCCGGGCC
ACAAGCCGAAGTCCCCCCTGTGCCAGTCCCGGGGAACGCCCGTGGCCGCT
CAGGCGTCCGGAGGCTCCCCACCGCCCCTCTACCGAGACCCCGCCTTTGA
CTGTGGCCCATATGAGCCCTCGAGACGGGCCCAGCCCGACCGGCGCCATC
CTGGGAGGCACTCGCTGGGCGTTGGGGGATGGGGGGGGAGTTGGGGGGGA
CCAGAGGCGGCCCTCGCTCAACCGAGGGTGGGAAGGCCCTGGGCGGGGCA
CGGTTCAGATGCCTTTTGCATACCCGGAGGAGCCCGATTTGGAGCTGGCC
GAGAGCGGGCGGTTCGTTCCCGGCCCCGGGCCACTGTCGCCCCCGTCGGT
GCCCCCTCTTTCCGGCCGCACCCTTCGCGTCCCTTCCTTCCAGCCTCCTC
CCGAGCCCCTCCACGCCCCTCCCTCCCTCGGCGCCTCCCCCGCCTCCCGG
CCTGGGACTCCCTCTCACCTCGGTCCACACCACTCCCCAACCTCCTCCAC
CTCCCTGTTCTTCGCATCTTCCCCCCGGCATCCTTCGCCCTCCCTGTTCC
TGGCCCCGGGAGCACCCCCGCCCCGACGCCACCACCATCACCACACCCAC
CGGCAGGTCACGGGCTCCTCCCAAGCCCTACTCGCCTCCCCGCCCGGGAC
AGGGCGGGCCCCATCCTCCATCCACACTGCGCATTCCTCCCTTGGGTGCA
CGTTGGGTCGCCTCAGCGGCCCTTACCAGTCAGAGAGGCTGCAGGAGAGG
GAGAGACGCGCGTCGGAAAATCATCGGTCTCACGGAAGCGAGGGCGGATC
GCGATGGGACGAGCAGCTCGTGGGATCACAGGAGTCGGCGGCTCGAGTTC
CCAGGCCCTACTTGGGTACTGCCACTAATCATCCGCCCCACCCTCCATCC
CTTCCTTCGCCGCGCCCTCCCTCCGTCCCTCCCCCGCCCTCCGCCACGGA
CGCCTGGATCGAGGCGGCCATGCGCCAGCACCGTCAACGTCTCCACCCTC
GCCACCACTCGCAGACCTTCCCCTTCTTCGCCCCCTCCCTCTCCTCCTCC
CTCCCGCCCTTTGCCTTCGCCTCGTCCCCGCGCCCCCACCACCCGCCACG
GCACCCCTCCCACGGCCCCCGTCACGCGCCTTCTGGGACGCTGGCCGGGC
GTCACGGACACGCACGAGCTCCGGGAGGAGGGGAAGAGAGGGAGGCGGGG
GAGCGGGGGCGGATGGGAACGAGGCCTGGCGTCGGGAGGGGAGATATGGG
AAGGGCGGGCGAGAGGGAGGGAGGGACTTTTCATTACTTTTCGGCGGTTG
GTGATGGGCGGCAGCATGGCGGGAATGGAGAAGGTGGGGAGGAGAGTAGG
GGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGCTGGTCCTCTGGGGA
GGCAGTGGCGTGGCACAGGGATATGATGGAGTGGTTCTTGTCGACACGAA
CAGAGGTGTCAGCAGGGGAAGGAGGGGAGGGGGGGGCGTTCGAAAGGAGG
GGCGCGGGGCCGTCCCCGTCGCGTCCTCCGAATTTTGCAGACAGTGACGG
ACCCAGGCGTCACTGGGCGTCTCATCCCGCCGACTTTCTCTCCCCTCCTT
CCCTCCCTTCCTCCCCCCCTCCTCCCCTCTCCCACGTCCTGCACGTGCAC
GGCGAGGGAGGGAGGGAGGGGGAGGGGGAGGACGAGGAGATGGGCGGGCG
CCCCACGCGCCTGAGCCGTCGCCATCCTCAGCTCTCCCTCTTCTCTCCCT
CCCCCTCCTCCTCGGTCTCGGTTCCTGCGCCCCGGCAAGAGGGACCCGTT
CCGGCCGACGTGCCGGGGGCAGGGACGGGGAGGGATGCGGGGGGGGGGCT
GGGTAGCTGGGAGCGGGAGGGAAACGAGGAGGAGAGGGAGGACACGCTCT
GGCTGGCGAGCGCCTTCGTGGACCTGGACGTGGACGCCATGGGCTACGAA
GAGCTCTTGCTCCTGGGGGAGCTCATCGGGCCAGCCAAGAAGGCGGGACT
CAGCCCGTCCCAAGTGGAGGATTTGCCCGCGCACCCCTTCCTCCCTCGGT
CCCTCTTCCGGCACCTGATCTCCCCCGGGAAAAGCTGCCGGGGCGGGGAG
GAAGGAGGGGAGCGGGGTCTGATGTGCGTTGTGTGTCTCTGTGAGGTGGA
GGAGGGAGAAACTGTCCGCACATTGCCACGCTGCGGGCATCGATTCCACG
GCCCAGGCTGTGTGGACGTGTGGCTGGAGTCGCACAATTCGTGCCCGGTC
TGCAAGGCGGTGGTGGTGGTGGGTGGGAGGGAGGAGGGGAAGACCGCGGA
GGTGTAG
back to top

protein sequence of rna7083

>rna7083-protein ID=rna7083-protein|Name=rna7083|organism=Nannochloropsis gaditana|type=polypeptide|length=354bp
GGRREGGRERGRARVLLPDAWSPSPDRKSPVTTSTSSPSSTSPASLAPPP
WPAKNGKRKRGEGGERPTGPVAPPPSLSSAGTSEAAHHLPAPMTHNERGP
RDPDGFQAGREREKDTWTGGATRPLGEAGEASLSPRPSPAAAHGVTSAPS
PETPPSAVNTTSLAHPMPLRSRAAPSSHPSTSSSPTTSLPSSPPPPTATS
QFLPAPATVPIDMKRNSSVSSATSNGSREEAGEGGREGKERAPRALAGAV
RRNLTSWLRCQGQSGRSLDALCSGVNRLLLCLQREAGREEVKEGGRALEL
REVQALVDHCTKEGGLDASLWGGEGQVPGEGGEEGGLQVAWNVLVGYLAS
VEEF
back to top

mRNA from alignment at CM002470.1:408318..409456-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7083 ID=rna7083|Name=rna7083|organism=Nannochloropsis gaditana|type=mRNA|length=1139bp|location=Sequence derived from alignment at CM002470.1:408318..409456- (Nannochloropsis gaditana)
GGAGGGAGGAGAGAGGGAGGGAGGGAGAGAGGGCGGGCGAGGGTTCTCCT
CCCCGACGCGTGGTCACCGTCGCCCGACCGGAAGTCCCCAGTAACCACCA
GCACTTCCTCCCCCTCTTCTACCTCCCCTGCTTCCCTCGCCCCTCCGCCG
TGGCCGGCCAAGAACGGGAAACGCAAACGAGGGGAAGGAGGGGAGCGGCC
CACAGGGCCTGTTGCCCCCCCTCCCTCCCTCTCTTCCGCTGGCACGAGTG
AGGCGGCCCATCACCTCCCCGCACCTATGACCCACAATGAGCGTGGCCCC
CGCGACCCTGACGGCTTCCAGGCCGGGAGGGAACGTGAGAAGGATACCTG
GACTGGAGGGGCAACGAGGCCCCTGGGCGAGGCTGGCGAGGCCTCCCTCT
CACCACGTCCCTCCCCAGCAGCCGCCCATGGCGTCACCTCCGCTCCCTCC
CCCGAGACCCCGCCATCAGCCGTCAACACCACCAGCCTCGCCCACCCCAT
GCCTCTACGCTCCCGTGCGGCTCCCTCTTCCCATCCCTCCACCTCGTCCT
CCCCCACGACCTCCCTCCCGTCCTCTCCGCCCCCGCCAACGGCCACCTCA
CAATTCCTTCCTGCTCCCGCCACGGTCCCTATAGACATGAAGCGGAACAG
CAGCGTCAGCAGTGCCACCAGCAACGGAAGTAGAGAGGAAGCGGGGGAGG
GAGGAAGGGAAGGAAAAGAAAGAGCCCCGCGGGCACTGGCGGGGGCGGTG
CGGCGCAACCTGACGTCGTGGCTCCGGTGCCAGGGTCAGAGCGGGCGCTC
CTTGGACGCCTTGTGCAGTGGCGTCAACCGGCTTCTGCTCTGTTTGCAGC
GGGAAGCAGGGAGGGAGGAGGTGAAGGAGGGGGGGCGGGCACTGGAGCTG
AGGGAAGTGCAGGCCCTGGTCGACCATTGCACCAAGGAGGGCGGTTTGGA
CGCCTCTCTGTGGGGAGGAGAAGGGCAGGTGCCGGGGGAGGGAGGGGAAG
AGGGAGGGTTGCAGGTAGCGTGGAACGTGCTGGTCGGCTACCTGGCCTCA
GTCGAGGAGTTCTAGGCTCCCGACCTCCCCTCCCTCGGTCACGGCCCCCC
CTGCTCCCCTCTCTCCCGAAGCCCCCGCACCCTCTCTCA
back to top

Coding sequence (CDS) from alignment at CM002470.1:408318..409456-

>rna7083 ID=rna7083|Name=rna7083|organism=Nannochloropsis gaditana|type=CDS|length=1065bp|location=Sequence derived from alignment at CM002470.1:408318..409456- (Nannochloropsis gaditana)
GGAGGGAGGAGAGAGGGAGGGAGGGAGAGAGGGCGGGCGAGGGTTCTCCT
CCCCGACGCGTGGTCACCGTCGCCCGACCGGAAGTCCCCAGTAACCACCA
GCACTTCCTCCCCCTCTTCTACCTCCCCTGCTTCCCTCGCCCCTCCGCCG
TGGCCGGCCAAGAACGGGAAACGCAAACGAGGGGAAGGAGGGGAGCGGCC
CACAGGGCCTGTTGCCCCCCCTCCCTCCCTCTCTTCCGCTGGCACGAGTG
AGGCGGCCCATCACCTCCCCGCACCTATGACCCACAATGAGCGTGGCCCC
CGCGACCCTGACGGCTTCCAGGCCGGGAGGGAACGTGAGAAGGATACCTG
GACTGGAGGGGCAACGAGGCCCCTGGGCGAGGCTGGCGAGGCCTCCCTCT
CACCACGTCCCTCCCCAGCAGCCGCCCATGGCGTCACCTCCGCTCCCTCC
CCCGAGACCCCGCCATCAGCCGTCAACACCACCAGCCTCGCCCACCCCAT
GCCTCTACGCTCCCGTGCGGCTCCCTCTTCCCATCCCTCCACCTCGTCCT
CCCCCACGACCTCCCTCCCGTCCTCTCCGCCCCCGCCAACGGCCACCTCA
CAATTCCTTCCTGCTCCCGCCACGGTCCCTATAGACATGAAGCGGAACAG
CAGCGTCAGCAGTGCCACCAGCAACGGAAGTAGAGAGGAAGCGGGGGAGG
GAGGAAGGGAAGGAAAAGAAAGAGCCCCGCGGGCACTGGCGGGGGCGGTG
CGGCGCAACCTGACGTCGTGGCTCCGGTGCCAGGGTCAGAGCGGGCGCTC
CTTGGACGCCTTGTGCAGTGGCGTCAACCGGCTTCTGCTCTGTTTGCAGC
GGGAAGCAGGGAGGGAGGAGGTGAAGGAGGGGGGGCGGGCACTGGAGCTG
AGGGAAGTGCAGGCCCTGGTCGACCATTGCACCAAGGAGGGCGGTTTGGA
CGCCTCTCTGTGGGGAGGAGAAGGGCAGGTGCCGGGGGAGGGAGGGGAAG
AGGGAGGGTTGCAGGTAGCGTGGAACGTGCTGGTCGGCTACCTGGCCTCA
GTCGAGGAGTTCTAG
back to top
Synonyms
Publications