rna7081, rna7081 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna7081
Unique Name	rna7081
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1142
Alignment location	CM002470.1:399510..401704 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100550g2.5015.mrna
Orig protein id	gnl\|cribi\|Naga_100550g2.5015
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002470.1	supercontig	CM002470.1:399510..401704 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100550g2	gene6847	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna7081	rna7081-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM23611.1	cds7064	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002470.1:399510..401704+
coding sequence from alignment at CM002470.1:399510..401704+

mRNA sequence

>rna7081 ID=rna7081|Name=rna7081|organism=Nannochloropsis gaditana|type=mRNA|length=1142bp
GCATCTCTTTGTGCTCGCCAAGTCGATTACCTCCCACCCCTACAAAACGT
CTGAAGCAGACGACATGTCACATTGCGATTGAACCATTAGCACGTAGGCT
ATATGATGTTGTACACAACGCTCAGATAGTTTGGCGGGCTCTGCGTGTTG
CTTCGTCATGCAATCTTCTTAGCCTTAGGTTGTCTTCTTTGTCCGCGCCA
ACCTCCTCCCGTGTCGAAAATCGCACGCGGAAGCCATAAATACTCCCCCA
AAAGACAAAACTATACTCATACACCCCCCTAAAAACAGCTAAGATTGCTG
CGTTAGATTTCTTGAAGAGCATTTGTCTGTAGAAGCAAGATCTCATGGCG
TCTTTTGGGGTCGTGTGCCCGGGTCGGCCGGTGATGGTAGATTGGCGACC
AATCAATGAGACCAAGTTCGTTTGTGAAATCGCCTCTCCCGCGCAAGTAA
CGGACCTGACTTTCTTTCTCCTCCCCAACATCGTGCTACCCCCCGGCACC
GGGACGGCCCTCTACTATTCTCTTCCCCCCTTTGCCGAATGGACCGTCCT
GGGAGCTCTAACACTGGACAAGCCCAGCGGTGTTTTCCGTACCGGCTGGT
CCACGATTGAAGGAATCGCCCAGATGCCAGCCATTCAACTTGGGGTCTCC
CTGGAAAGTCTCGACACGATCACAAATCTAGACCTGCAGAAATCTGGCGT
GGATGAACGGCGGCTCTTTGCTCATAAAATTGCCCAGGATCTATGGTCGT
TTGTATGCTCCTTTGCGCAGCAAACGCAGCAAGGAGGGCGAGAGGCAGTG
CTTCTCCCCGCAAATGCCATGGATATGTGGCTTGAGAGATTCGATAGAAA
GTATCGACTGGACCCATCCTTTATGTTCAAGACAGGGAATTAAAGATTTT
GAAGATCCAATCATAGTTTAGAAAGGAAGAACTGCAGGAAAGGGCTCGGG
GTGGGGAGGTTAAGCTGAGGGGGAAAAGGAAAGACCTAGGGGGCTGTAAA
TGAAATTGCACAGCGAAATATTGTTGCAGGAAGTGCTGCAACAATAGAGC
TCGAACCAACCGTGCAAAAAGACATAAAAACTTATAAAAGTTCGATGAAT
TGTTTGAAATGAGGCATATGTTGGCTCCGTAAAATTTTCACG

protein sequence of rna7081

>rna7081-protein ID=rna7081-protein|Name=rna7081|organism=Nannochloropsis gaditana|type=polypeptide|length=538bp
MSISFTTFVPSRQQRGDAAVEAVQVMRSHLQWVFEKRRTRKARKTITARS
NFKDIKIGVQNILDDKVRSEGEIYHRTTRKGTTNNVHHVTNLPAVLTNPG
IITTTASVHLSLVPKLRSSISPFIPYCESEDDKEGAPDIFLLASSHQDMP
TKTNAMPVALPTPSNRVLSPLTIPLLDTASIPVSSSLFPPRCVALPRPLQ
EYHDVITHLDSAARHALILYGELVAVSRDRAQKRDGEVGRDVEDGALGRE
RKEEEETGWEAGDVLDASEGALQTLTAMYLEGFGHLASAAMTVVGGQEGA
VAREAKRRLAAPTVPGGTLLSSPLPPPSSGPLTLMEKASGVDENGTTLVS
DPQGLFERPPASPASSLRSDCSTPTGLDLPPPTTDEASGEHLPPPTTEEA
SEDGMPTRGGERKGGKVTEEDASEVRACGPGRPAPADVDALGMARWPGAE
NDVALVAGVEDADSVAVMSTGAAEKTLHPQGLDPLLQATLERYSTLLMRL
VQNKLEALTARESIGTLAAEERGCGEEERDTVSEVTTL

mRNA from alignment at CM002470.1:399510..401704+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna7081 ID=rna7081|Name=rna7081|organism=Nannochloropsis gaditana|type=mRNA|length=2195bp|location=Sequence derived from alignment at CM002470.1:399510..401704+ (Nannochloropsis gaditana)
CGCAGGTGCTTCATCCACTTCGCTTGGGGGAGCCGGaaccttcttcctgt
cttcgCCGCGGTCGATCCCTTCCTAAATATCCCGGGGGTCACGAAAACCT
ACCGGTGCAGTACTTTCACTAAGTTGCGTGTGAGTTCTTTATGTCGATAT
CATTTACAACCTTCGTCCCTAGCCGTCAACAGCGGGGAGATGCGGCAGTC
GAGGCTGTACAGGTTATGCGAAGCCACCTCCAGTGGGTCTTTGAGAAacg
gaggacaagaaaggcaaggaagacTATCACAGCTCGTAGCAATTTCAAAG
ATATCAAAATTGGCGTTCAGAATATTCTTGATGATAAAGTACGTAGTGAA
GGTGAGATATATCACCGAACTACGCGCAAGGGGACTACAAATAATGTGCA
CCATGTGACAAACCTTCCGGCTGTACTTACAAACCCTGGTATCATCACCA
CCACTGCTTCCGTCCATCTCTCTCTCGTCCCTAAACTTCGCTCTTCCATA
AGCCCTTTCATACCATATTGTGAGTCggaggacgacaaagagGGTGCACC
CGACATTTTTCTTCTGGCTTCTTCGCACCAGGACATGCCGACGAAGACGA
ATGCGAtgcccgtcgccctccctacACCGTCCAACCGCGTTCTGTCACCA
TTGACAATACCATTGTTGGACACGGCCTCGATTCCCGTGTCGTCGTCTTT
GTTTCCTCCCCGGTGTGTGGCATTGCCTCGCCCCCTGCAGGAGTATCACG
ACGTCATTACGCACTTGGATAGCGCGGCTCGACACGCCCTGATCCTCTAC
GGCGAACTGGTGGCTGTGTCCAGAGACAGGGCACagaagagggatggaga
ggtaGGTCGGGATGTGGAAGACGGAgccttggggagggagcgcaaagagg
aggaggagacagggtGGGAAGCCGGAGATGTTCTTGACGCTTCAGAAGGA
GCGTTGCAGACATTGACGGCGATGTACCTGGAGGGTTTCGGACATCTGGC
GTCAGCGGCCATGACAGTGGTTgggggacaggaaggagccGTGGCGCGAG
AGGCAAAGAGACGACTGGCGGCGCCGACGGTGCCGGGCGGCACActtctc
tcctcgccccttcctccaccatcttctGGGCCATTAACGCtgatggaaaa
ggcctcAGGGGTGGATGAGAACGGGACCACCCTGGTTTCCGACCCCCAGG
GGTTGTTTGAGCGCCCACCTGCCTCGCCTGCCTCGTCCCTGCGAAGCGAC
TGCAGTACCCCCACGGGCCTTGATCTCCCACCTCCGACGACTGACGAAGC
ATCTGGTGAACACCTCCCACCTCCGACGACTGAGGAAGCATCTGAAGACG
GGATGCCGACGCGCGGCGGCGAAAGGAAGGGTGGTAAAgtgaccgaggag
gatgcaTCCGAGGTTCGGgcgtgtggaccgggacgaCCGGCCCCGGCGGA
CGTCGATGCTTTAGGGATGGCAAGATGGCCAGGGGCAGAGAATGACGTAG
CATTGGTAGCCGGTGTAGAAGATGCGGATTCGGTGGCTGTGATGAGTACG
GGGGCGGCTGAGAAAACGTTGCACCCTCAGGGACTCGACCCTCTACTGCA
GGCAACCTTAGAGCGATACTCCACGCTTCTGATGCGCCTCGTGCAAAACA
AACTGGAGGCACTCACGGCCAGGGAAAGCATCGGGaccctggcggcggag
gagaggggttgtggggaggaggagagggacacTGTGTCCGAGGTGACCAC
GCTATGAGGAGTATCCCAAGGACAAGGCGAGGAAACTCCGACACGCCGCG
TGCCACATGCAATTTGGTTCTTTGTCGGGGCCGTTTGCCTGTCCGTGATG
GTCGGCATGACGGACCACCCTAAgcgtttttcttttccccttgcctTGAA
GTCTTTCATATGTAGGACGGGCGGGATTTTCGACCCCTCGAATCTCCCCC
CAGTCGATGCCCTCGCTTTTCAACACGCCGAGAGGCACCCTACCCCTAAG
CCCACCCCCTCTTTTGGCCGCTGCTGCCATCTCTAATCGTGGTTCTACTG
TCTGTGTGTCAACTACTAGTGCGGGGGGTATTAAACCCCCCCGGCTGCAT
TGAATCTACCGTGACTGTCGCAAATGCATCTGTCTATCGATTGCTTCCTA
TCTACAAGGATTCCTTTGTATCCCGTCGTCTATcgacaccctccc

Coding sequence (CDS) from alignment at CM002470.1:399510..401704+

>rna7081 ID=rna7081|Name=rna7081|organism=Nannochloropsis gaditana|type=CDS|length=1617bp|location=Sequence derived from alignment at CM002470.1:399510..401704+ (Nannochloropsis gaditana)
ATGTCGATATCATTTACAACCTTCGTCCCTAGCCGTCAACAGCGGGGAGA
TGCGGCAGTCGAGGCTGTACAGGTTATGCGAAGCCACCTCCAGTGGGTCT
TTGAGAAacggaggacaagaaaggcaaggaagacTATCACAGCTCGTAGC
AATTTCAAAGATATCAAAATTGGCGTTCAGAATATTCTTGATGATAAAGT
ACGTAGTGAAGGTGAGATATATCACCGAACTACGCGCAAGGGGACTACAA
ATAATGTGCACCATGTGACAAACCTTCCGGCTGTACTTACAAACCCTGGT
ATCATCACCACCACTGCTTCCGTCCATCTCTCTCTCGTCCCTAAACTTCG
CTCTTCCATAAGCCCTTTCATACCATATTGTGAGTCggaggacgacaaag
agGGTGCACCCGACATTTTTCTTCTGGCTTCTTCGCACCAGGACATGCCG
ACGAAGACGAATGCGAtgcccgtcgccctccctacACCGTCCAACCGCGT
TCTGTCACCATTGACAATACCATTGTTGGACACGGCCTCGATTCCCGTGT
CGTCGTCTTTGTTTCCTCCCCGGTGTGTGGCATTGCCTCGCCCCCTGCAG
GAGTATCACGACGTCATTACGCACTTGGATAGCGCGGCTCGACACGCCCT
GATCCTCTACGGCGAACTGGTGGCTGTGTCCAGAGACAGGGCACagaaga
gggatggagaggtaGGTCGGGATGTGGAAGACGGAgccttggggagggag
cgcaaagaggaggaggagacagggtGGGAAGCCGGAGATGTTCTTGACGC
TTCAGAAGGAGCGTTGCAGACATTGACGGCGATGTACCTGGAGGGTTTCG
GACATCTGGCGTCAGCGGCCATGACAGTGGTTgggggacaggaaggagcc
GTGGCGCGAGAGGCAAAGAGACGACTGGCGGCGCCGACGGTGCCGGGCGG
CACActtctctcctcgccccttcctccaccatcttctGGGCCATTAACGC
tgatggaaaaggcctcAGGGGTGGATGAGAACGGGACCACCCTGGTTTCC
GACCCCCAGGGGTTGTTTGAGCGCCCACCTGCCTCGCCTGCCTCGTCCCT
GCGAAGCGACTGCAGTACCCCCACGGGCCTTGATCTCCCACCTCCGACGA
CTGACGAAGCATCTGGTGAACACCTCCCACCTCCGACGACTGAGGAAGCA
TCTGAAGACGGGATGCCGACGCGCGGCGGCGAAAGGAAGGGTGGTAAAgt
gaccgaggaggatgcaTCCGAGGTTCGGgcgtgtggaccgggacgaCCGG
CCCCGGCGGACGTCGATGCTTTAGGGATGGCAAGATGGCCAGGGGCAGAG
AATGACGTAGCATTGGTAGCCGGTGTAGAAGATGCGGATTCGGTGGCTGT
GATGAGTACGGGGGCGGCTGAGAAAACGTTGCACCCTCAGGGACTCGACC
CTCTACTGCAGGCAACCTTAGAGCGATACTCCACGCTTCTGATGCGCCTC
GTGCAAAACAAACTGGAGGCACTCACGGCCAGGGAAAGCATCGGGaccct
ggcggcggaggagaggggttgtggggaggaggagagggacacTGTGTCCG
AGGTGACCACGCTATGA

Synonyms

Publications