rna7077, rna7077 (mRNA) Nannochloropsis gaditana

Overview
Namerna7077
Unique Namerna7077
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1045
Alignment locationCM002470.1:392469..394016 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101086g2.7630.mrna
Orig protein idgnl|cribi|Naga_101086g2.7630
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002470.1supercontigCM002470.1:392469..394016 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101086g2gene6843Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23614.1cds7060Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7077rna7077-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7077 ID=rna7077|Name=rna7077|organism=Nannochloropsis gaditana|type=mRNA|length=1045bp
CTCTTCTCCCTCGACCGCTACCTCCAGGCAGACGGCCCCTCTTCCCTCCG
GGCAGCGATTGCCTCCCTCCTGTCCTCCTTCCCCCCCTCCCTCTGGCCCA
GCCCCGTCCTCCCCGCCCTCCTCCACGGACTCACGGGCGCGGAGGGCAGG
CATCAGGAGGCAAAGAATGGCGTGGGGCATCTCGGCATTCCGGCTCTCGT
GCACATCGCGCGATGCATCCCTATGGCCCTCGAGCCGGGGAGAGAGCTCC
TCAGCGCCCTCCTTCGCCACCTTCTCGAGCAGAGAATCCTTGCCCTCCCC
TCCTCCCCCTCGGCGTCCGCCTCTCTTCCTCCCGCTTCCTCCCCCTCCCC
CCTCCTGGCCTCCCTCTCTTCCCTCCACATCGGCGAGGGGGGAGACCGCC
GCACCTACCTCCTCCGACTGCTGCGTCTCCTCGACGACCCCTCCTTTGCC
CCCCCCTTCTTTGCCATCTCCCCCCCTTCCTCCGCCCACCAAGGCCGGGA
GGAAAGGGGAAATTCAGGAGCCCGCATCCTCCAGCTTGCCCTCGCACTGG
CCCTGTGGGTACAGCTCAGCCTTACGTCCCGTCCCCCGCCCCGGGGGGGG
GGAGGGGCCGGGAGGGCGGGATCGCGAGAGGAGGGCGTTCGCAGAGGAGG
TGGAGGGGAGACTGAAGAACCTGGAGCGAGGGAGGCTGCGGGGCATGAAC
GACGAGAGGCTTCAGACGGCCAAAGACGTGCTGACGCAGACTGTGGTGGA
GCTTCGGGCCTGGAGGGGGGGAGGGGCCGAGGGAGGGAGGGAGGGAGGGA
CGCAGACGAGCCTGCTTGGGTACGCGGTGCGGCCAGGGGGCGAGGAGGTG
GAGGGAAGAGAGTAGGTGGTGTGGGGAAAAGGGGATTGGGCTCTGATGCC
GAGAAAGGTTGAGGTGTATAGATGCCCGTCACAGCCGAGGGGACGGAGGG
GTTGGAGGTGGCGACCGGCAGCCCCGCCGGTTGTAAAAAAATAAAGAAAC
GCTTTGGAGGGCCCGAACCCCTTCGCGGCGATGTGCATGACGTGA
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protein sequence of rna7077

>rna7077-protein ID=rna7077-protein|Name=rna7077|organism=Nannochloropsis gaditana|type=polypeptide|length=124bp
MSFASPQSLRTDLRSNYVFLHRSGVRVRRYLRKCDMCTWMPCHLCTIDFQ
AFDTAQPEVPHYQASTIMTSGPSYLLAARVTHTIWLTPLVHSFQTKLYPG
SCPHSSLAYLAGRANQECDVRRAH
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mRNA from alignment at CM002470.1:392469..394016-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7077 ID=rna7077|Name=rna7077|organism=Nannochloropsis gaditana|type=mRNA|length=1548bp|location=Sequence derived from alignment at CM002470.1:392469..394016- (Nannochloropsis gaditana)
ATAAATGGAGGATTCACCCTCTGATGCTTGATACCAGAGCGCTCTGACGG
GATGGGTTGAAGCGTCGCCGGAAAGGAGACACTGGCGCGCGTCGTACCTA
AATCCCCCAAACAGGCGGTGCATACGGCGTGCTTGCGCGACAAATGGCTG
GGAAAGGAGCGAAAGGAACGGTATAATCTTTGAGTGAGGTACAACCGGCT
TTTATTCTTTACGTGGTTGGCTCCATGTCTTTTGCAAGCCCTCAATCTTT
AAGAACAGACCTTCGAAGCAATTATGTCTTTCTTCATCGAAGTGGCGTGC
GTGTGCGGCGATACCTTCGGAAATGTGACATGTGTACATGGATGCCCTGT
CATCTTTGTACCATTGATTTTCAGGCTTTCGACACCGCACAACCTGAGGT
CCCTCATTACCAAGCTTCTACCATCATGACTTCGGGCCCCTCTTACCTCC
TCGCCGCACGTGTAACCCATACCATCTGGCTCACGCCACTCGTCCACTCG
TTTCAAACCAAGCTCTATCCAGGCTCGTGCCCGCACTCATCTCTTGCTTA
CCTCGCTGGTAGAGCCAACCAGGAATGTGATGTCCGCCGCGCCCACTAGC
ACCCTGTCTTCCTCCTCTTCATCGTCCACTGCCTTCATCCGCACCACCAC
CAACTTTATAAGCCGTCAAGCCCTGATCGAGGGCCCCCAAAACGTGGAAA
TGCGGGGCCGGGTACGCTTTCCCCTCCTGTCTCGGACGTTACCCTTACGT
CTCCATTCCTTTTCGTGGCATGTCCTCCATAGTCTTAACGCGCCTTTCAT
CCCCTTGCACCCACCCACGCATCGCGCCATTTTCCCCTAGAGCATCGTGG
ACGATGAGGTCACCATCCGCGGGGACCTCGCTCCCATTCGCGTCGGCCAT
TTTTGCTACTTCGCGGCCGGCTCTGTGCTCAGCCCCCCCTCCCTCCACCT
CCTTCCCACGACGGAGCGCAAAAAGCCGCAGACCCAAGAGCCTCGTCGGC
ACCTCCCACAGCAGCAACATCCGCCTCCTAATTCCCCAGGGGTGAAGGCT
TCCCACATCCCCATGTGCATCGGGAGCATGACGAGTGTCGGGAGAGATGC
GGTCGTCCAGGCGGCCGCTGTGGGAGCATGTGTGGAGGTGGGCGACAATG
CCGTTATTTCCGCCCGTTGCATTTTGAAAGACGGTTGCCGGATCGCGCCT
AACACGGTCTTGGCGCCTGACACGGTAGTGCCTCCCTTCGCCTTGGTGGC
GGGCCGGCCGGGGCAGATCGTGGGCGAGCTCCCGCCCAGTGTGATGGTGA
TGAGGAAGGAGGCGGCGCAGGGGAGGTACCGGCGGAAGAGGAGGTGGATA
CTGGAGGGGGGGGTGAGGTAGAGGACAGGGGTCATGTAGCGGTGTTCATG
AAGGGGGGGGTGCCGACAAAGCCGTCGGAGAAGGGGAGCGGGAGGATGAG
GGCAGCCCATCCCCCCATGCACATGAAACCAAACATCAGGAACAAGTTTG
TCCCAGCACGTCCAATATATGTAAATAATATGTGTCACGTCATGCACA
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Coding sequence (CDS) from alignment at CM002470.1:392469..394016-

>rna7077 ID=rna7077|Name=rna7077|organism=Nannochloropsis gaditana|type=CDS|length=375bp|location=Sequence derived from alignment at CM002470.1:392469..394016- (Nannochloropsis gaditana)
ATGTCTTTTGCAAGCCCTCAATCTTTAAGAACAGACCTTCGAAGCAATTA
TGTCTTTCTTCATCGAAGTGGCGTGCGTGTGCGGCGATACCTTCGGAAAT
GTGACATGTGTACATGGATGCCCTGTCATCTTTGTACCATTGATTTTCAG
GCTTTCGACACCGCACAACCTGAGGTCCCTCATTACCAAGCTTCTACCAT
CATGACTTCGGGCCCCTCTTACCTCCTCGCCGCACGTGTAACCCATACCA
TCTGGCTCACGCCACTCGTCCACTCGTTTCAAACCAAGCTCTATCCAGGC
TCGTGCCCGCACTCATCTCTTGCTTACCTCGCTGGTAGAGCCAACCAGGA
ATGTGATGTCCGCCGCGCCCACTAG
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Synonyms
Publications