rna7076, rna7076 (mRNA) Nannochloropsis gaditana

Overview
Namerna7076
Unique Namerna7076
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length896
Alignment locationCM002470.1:391438..392482 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101086g3.7628.mrna
Orig protein idgnl|cribi|Naga_101086g3.7628
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002470.1supercontigCM002470.1:391438..392482 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101086g3gene6842Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7076rna7076-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23612.1cds7059Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7076 ID=rna7076|Name=rna7076|organism=Nannochloropsis gaditana|type=mRNA|length=896bp
GTATGCCCTTTCTTTTTTGCAGAAGACAGGTCGCTTGACGAGAAAGGTCA
AGTTCCCGGATACGACATCAGCCGAGCGGGGGCCTCGAGGCACACACGCG
GACGGCTGGTCTCATCTCCCATCCCCACCCATTGCCTGCGCCTTGACTAT
TGTAGGCTATGTCCATGTCTACCGCCACCGACGTCTCCCCGCCGTCCCCC
CTCCCCGTTGCTGAACGTCTGGCACCTTCCTGCCGCGGGCCCCTCAAGCA
AAGCCTTTCGTCCTCCTGTCTGCCCGCTTCCCCCCCCGCCCCCCACCTCG
CACGGCTGTCAGGACCCTTGTACAAGCGGAAAGACCACTTGACGTGGAAA
TGGCGCCCACGCCTCTTCCGGGCCCATCACGAAGATTTCCTTCTGTTCTA
CTACCTGCCCCGAACCTCCCCCGTCACGGTTCCCCCCCGGGGGGTGGTGC
CCCTGGTAGGCTGTGCCGTGCACGTCATGCACACGGCAGAGGTCATCGGA
GGCGGGGACAGGAAGAGATGTGGCTATGTATTCGAGGTCAGGCATGCCTG
GTTGGGTAAGCCCTGGGTACTTGCAGCGGAGACGGAGGAGGAGAGGGAGC
GCTGGGTCCGAGGCTTGAGGAGGTTGATCAGGGAGGCCCACGCCGCGTTG
AGCCTGGGCGGGGAGGAGGAGGAGGAGTGCATGGGGGAGGAGGAGGAGGA
AGGGGAAAAGGAGGTGGAAGAGGAGCACCTCGAGCGTCTGGTCTGGCCTG
GCTACGAGGAGGCAGTGCAGGCGGCCTTGAAGCGGCTGTTGGAGTACGCC
GAGGTAGGGTGGGGGCGCTGGACCGTGTCACGTGGTTCAGGGAACCGCCT
CTTGCCTGGCGCGTGCGCCCGGCGGGGGGAATGCGTGCGAGATTGA
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protein sequence of rna7076

>rna7076-protein ID=rna7076-protein|Name=rna7076|organism=Nannochloropsis gaditana|type=polypeptide|length=303bp
LFSLDRYLQADGPSSLRAAIASLLSSFPPSLWPSPVLPALLHGLTGAEGR
HQEAKNGVGHLGIPALVHIARCIPMALEPGRELLSALLRHLLEQRILALP
SSPSASASLPPASSPSPLLASLSSLHIGEGGDRRTYLLRLLRLLDDPSFA
PPFFAISPPSSAHQGREERGNSGARILQLALALALWVQLSLTSRPPPRGG
GGAGRAGSREEGVRRGGGGETEEPGAREAAGHERREASDGQRRADADCGG
ASGLEGGRGRGREGGRDADEPAWVRGAARGRGGGGKRVGGVGKRGLGSDA
EKG
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mRNA from alignment at CM002470.1:391438..392482+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7076 ID=rna7076|Name=rna7076|organism=Nannochloropsis gaditana|type=mRNA|length=1045bp|location=Sequence derived from alignment at CM002470.1:391438..392482+ (Nannochloropsis gaditana)
ctcttctccctcgaccgCTACCTCCAGGCAGacggcccctcttccctccg
gGCAGCgattgcctccctcctgtcctccttccccccctccctctggccca
gccccgtcctccccgccctcctccacggactcacgggcgcggagggcagG
CATCAGGAGGCAAAGAATGGCGTGGGGCATCTCGGCATTCCGGCTCTCGT
GCACATCGCGCGATGCATCCCTATGGCCCTCGAGCCGGGGAGAGAGCTCC
TcagcgccctccttcgccacctTCTCGAGCAGAGaatccttgccctcccc
tcctccccctcggcgtccgcctctcttcctcccgcttcctccccctcccc
cctcctggcctccctctcttccctccacatcggcgaggggggagaccgCC
GCACCTACCTCCTCCGACTGCTGCGTCTCCTCGAcgacccctcctttgcc
ccccccttctttgccatctcccccccttcctccgcccaccaaggccggga
ggaaaggggaaattCAGGAGCCCGCATCCTCCAGCTTGCCCTCGCACTGG
CCCTGTGGGTACAGCTCAGCCTTACGTcccgtcccccgccccgggggggg
ggaggggccgggagggcgggatcgcgagaggagggcgttcgcagaggagg
tggaggggagactGAAGAACctggagcgagggaggctgCGGGGCATGAAC
GACGAGAGGCTTCAGACGGCCAAAGACGTGCTGACGCAGACTGTGGTGGA
GCTTcgggcctggagggggggaggggccgagggagggagggagggaggga
cgcagaCGAGCCTGCTTGGGTACGCGGTGCGGccagggggcgaggaggtg
gagggaagagagtaGGTGGtgtggggaaaaggggatTGGGCTCTGATGCC
GAGAAAGGTTGAGGTGTATAGATGCCCGTCACAGCcgaggggacggaggg
gttggaggtGGCGACCGGCAGCCCCGCCGGTTGTAAAAAAATAAAGAAAC
GCTTTGGAGGGCCCGAACCCCTTCGCGGCGATGTGCATGACGTGA
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Coding sequence (CDS) from alignment at CM002470.1:391438..392482+

>rna7076 ID=rna7076|Name=rna7076|organism=Nannochloropsis gaditana|type=CDS|length=912bp|location=Sequence derived from alignment at CM002470.1:391438..392482+ (Nannochloropsis gaditana)
ctcttctccctcgaccgCTACCTCCAGGCAGacggcccctcttccctccg
gGCAGCgattgcctccctcctgtcctccttccccccctccctctggccca
gccccgtcctccccgccctcctccacggactcacgggcgcggagggcagG
CATCAGGAGGCAAAGAATGGCGTGGGGCATCTCGGCATTCCGGCTCTCGT
GCACATCGCGCGATGCATCCCTATGGCCCTCGAGCCGGGGAGAGAGCTCC
TcagcgccctccttcgccacctTCTCGAGCAGAGaatccttgccctcccc
tcctccccctcggcgtccgcctctcttcctcccgcttcctccccctcccc
cctcctggcctccctctcttccctccacatcggcgaggggggagaccgCC
GCACCTACCTCCTCCGACTGCTGCGTCTCCTCGAcgacccctcctttgcc
ccccccttctttgccatctcccccccttcctccgcccaccaaggccggga
ggaaaggggaaattCAGGAGCCCGCATCCTCCAGCTTGCCCTCGCACTGG
CCCTGTGGGTACAGCTCAGCCTTACGTcccgtcccccgccccgggggggg
ggaggggccgggagggcgggatcgcgagaggagggcgttcgcagaggagg
tggaggggagactGAAGAACctggagcgagggaggctgCGGGGCATGAAC
GACGAGAGGCTTCAGACGGCCAAAGACGTGCTGACGCAGACTGTGGTGGA
GCTTcgggcctggagggggggaggggccgagggagggagggagggaggga
cgcagaCGAGCCTGCTTGGGTACGCGGTGCGGccagggggcgaggaggtg
gagggaagagagtaGGTGGtgtggggaaaaggggatTGGGCTCTGATGCC
GAGAAAGGTTGA
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Synonyms
Publications