rna7068, rna7068 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna7068
Unique Name	rna7068
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2133
Alignment location	CM002470.1:369438..371947 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100137g13.29.mrna
Orig protein id	gnl\|cribi\|Naga_100137g13.29
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002470.1	supercontig	CM002470.1:369438..371947 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100137g13	gene6834	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM23627.1	cds7051	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna7068	rna7068-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002470.1:369438..371947-
coding sequence from alignment at CM002470.1:369438..371947-

mRNA sequence

>rna7068 ID=rna7068|Name=rna7068|organism=Nannochloropsis gaditana|type=mRNA|length=2133bp
GCTGGCGCGTGGGACGTGGTAGAAAACTTAATTCCAGTCGCCAGAAAACG
ACGTGGGAAATAGCGATACAATCAACCAACCCGCTAGGCAGCAGCACGGC
CGGCGCCTGCCTCCGGCTTTCTCTCTTTGGCTCTTCTCGCCTCACTCACG
TGCCATGACACTGGCACATTCAGGAAGTTACAGAAGCACCGTCATGTTGC
GGCCCCCGGTCACCACCGGGCGGCGCCGAGCGTCGGAATGCAGCACAGTA
GAGGGGCCCTCCTACCCGTATCCCCGGCCCCCTTCCCGAGTGAAAGCCGC
CATTCCGAGTGGAAGCACTCGCGGTGTAAATGCTGCTCCAGCTACCATTC
AGCACGCGCAAGTGAAGTTGGCAGCTTTTCAGGAGCAGCTCAAGGCGTAC
ATGGACCTTGACAGGGGCAACGGGCCCTTGGTTCGCGCCCTCGACAAACG
AGAAGCACTACAGGGAAAGCGGGCACAATTTTTTGCGCTCCTTCAGCATT
TGCTCAAGACACAGGAAAGTCTCAGCGCTTCCAAAGTTTGGTTGTGCGTG
GAAAAGGAACGACAGCTAGAGCTTTTGTCTCGGCGCTGCGAGCTTCAAAT
CCAGCAAACCCAAAACCAACGGCGCATTCGAGAATTGCTGCTTCGCACGG
ACCCTAAATTGAGCGACAATGCCGCCCACAATAAAAGCAGCAGCAAAAGC
AGCAAGAGCAGCAAGAGCGGGCTCAGCAGCCAGTCCCCCTCTTTGCAGGA
CCGGGAGCTGCCCGCAGCTCTTGCCCACCTCCGCCGGGTAGCGTTTCTGG
AGACGGTCGAGATTATTGCTCGCACCGTGCAGGAGCAAGCAGCAGGGTAC
CGGACTCTGGCCCGCGAGTACGTCCCGACGCTATTGGAGGAAGACAGGGA
GCAGCGCGAAAATTTTGAATGGGCTTCCCGGGTCGTGCCCAAGCTGGTGG
AGGGAATGCGCGGTTGGGTGGAGGAAAACGAAGGGACACGGAAGAAGGCC
TTAGCCCGCTTTCTGCGGAGGAGGCGTGAGTTCAAGGCATTGCAAGACAT
GCGGCGCCACGTGGAAGGGACGGTGAAGCCTGCAGCGGCGCGGGCGGAGG
AGGACTTGCAGCTGATGGCCGGGAAATTCGATTCGGACGTGGCGCTTGTC
AGAGAGCGCGCGAGGGAAGGCGTGGAAGAAGAGATTGAGAAACTGCGAAG
AAAGGTGGAGGAGAGGCAAGGGGCGTGGGAGGAGCTGGAAAAGGCGCAGG
CCGCGATAGAGGTGGGGTTTGCGGCGCGGGTCCAGGAAGGAGAGGAGCAG
ATGGCGCGTTTGAAGACGGAGGAGGAGGAATGGGCGGTGATGAGGACGGA
GGCTCGGGATTTCTTCCAGAGGGCCTTGAAGACGGTGCGGGATCGCCTCA
AGGCCTTCGAAACGCAGCGCCATGCCGACCTTCTGGGGATCGCGGACATG
ATGGAGCTCTATGAGTTCATGAAAGAAGAGGAAGGGGGGGGGAAGGGGAG
GAGAGCGGAAGGGGAAGAGAGCAGCGGAGGGGGAAGATACGAGAGCGACA
CGGATGAGGAAGAGGGGGAGGGGGAGGAGATGACCGGGGGGGGCGGTCGA
GAAGAAAGCTACGAGGAAGAACAGGGAGGTGAGGGAGGGGGCTATGACGT
GGAGGACGTGGAAGGCGAGGACGATCGCGAGGGCGCCGAGGAGGAAGCGG
GTGGCTATGAGGATGAGGAAGTTGCGGGACCGGGGAGGTACGAAAGTGAT
GAAGAAATAAGAATAGGCTATGGAAGGGAGGGATATTCCGAAGAGGTGGG
ATACAATAGTGAAGGGGAGGAAGAGGAGCGAGGACAAGAAGAGTCAAGCG
ATGAAGGGGGATGAGGAAGGGTGAGAATCAAGGTGGCGGGAAAGGGGGAA
GGTGGTGCACTGATCCCATGGAGGAGAAGATGGAAGCGTCGGCGAGACGT
GAGAGGAAGATCCGCCGTGTCCCAGAAGTACTCCACCACTTTCTGATCTG
GAAGGCACGTCGTCCAGATGTGCGTGGCGGGGAGGCCGAATGACAGCAAT
GTGAAATAAGAGGCTTGATTTGAGCGAAGTGGGCTGAATAGACTTTTACT
TGCGTGCTTTTGTCACGGGGCGGTGTCCCTCCC

protein sequence of rna7068

>rna7068-protein ID=rna7068-protein|Name=rna7068|organism=Nannochloropsis gaditana|type=polypeptide|length=540bp
MVCNRVFLLFVLVLFHLPTAHRAIEINWTPADGEGTGPMPVSKRYRDQME
KLQQLEAEQVSRDRARAGASAHPPPASSSMPSAQKSAVQQRSVLGSLFFG
VCRHPLSTATLAATVWAGYRLRRAARETGCLVSKSPHFSVWEPPLGYVAH
LLNEDIPALMLEDSMASVGAGGSPAGFARVHRAGKEGRGQGGGREEGKGE
GGAGTVVFESVQVGSGEVSFRKATDLVRTLRLFDAAASSSSSSSSSSSSS
FSSSSSFSFSSAPSCLGRFYSSERAKEGVFVARATAIPGASKGLRRWALM
PVRIFRQEGREKLARGQRRTKKEKMGGKKRIKGKETTFRKRPKKKKGGKR
RKGGRKGRRKVETSGKVGQEGRDASPPSGEGKRGGRMMEVAYAETVLRPL
PGCVWTGDLCLTASWRDPRHGGDDGVHVQVTWHRLPSPGTSLPSSFQREV
AAALVHEARKLVAREMVIHRARERQQGQLAQDAARALQEKKKKERQLLLN
PPPDKKKWKKMQRQGGKEAGPGRWQPSADLAARRNPRRGG

mRNA from alignment at CM002470.1:369438..371947-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna7068 ID=rna7068|Name=rna7068|organism=Nannochloropsis gaditana|type=mRNA|length=2510bp|location=Sequence derived from alignment at CM002470.1:369438..371947- (Nannochloropsis gaditana)
GTTCCCCCCCCTCTGTCCGAACACAACCAGAATTCCTCCTATCTGTCCTT
ATGCATACCCCTATTATTTACTCATTTTACAAAATCCCTATAGATACATT
TTGTCGTCCTTCAAAGCTCACGCGTCTGTCATTTGGCCACTGCGTTCATG
CATCCTTGCTCAAGTCCCTCTTCCGTTCTTGCCCCGGCCCTCCAGCCCTT
GCTGCAGTAACCTGCCTGGCACCGCCATCAACGAATAAACCGTGCGGGTA
CATGCGCTCATCTGTGTTAAGCGTTTTGCAATAGGACCAAACAATCTCCT
CCAGTTCCATCATGGTCTGCAATCGCGTGTTTCTCCTTTTTGTCCTTGTC
CTCTTTCACCTCCCCACCGCCCATCGCGCCATCGAAATCAATTGGACGCC
GGCCGACGGCGAGGGCACAGGTCCCATGCCAGTATCGAAACGTTATCGTG
ATCAAATGGAGAAATTGCAACAGTTGGAGGCAGAGCAGGTAAGCCGAGAC
CGGGCACGGGCAGGGGCCTCGGCCCATCCCCCCCCTGCTTCCTCTAGCAT
GCCCTCCGCGCAGAAATCTGCCGTCCAGCAGCGCAGTGTATTGGGAAGTT
TGTTTTTTGGAGTTTGTCGTCATCCTCTGAGCACGGCCACGCTCGCGGCC
ACGGTCTGGGCCGGCTACAGGCTCCGACGTGCTGCCCGCGAAACAGGGTG
CTTGGTCTCCAAATCGCCGCATTTTTCGGTTTGGGAGCCCCCGCTGGGGT
ATGTGGCCCATCTTTTGAACGAGGATATTCCAGCACTCATGTTAGAAGAC
TCCATGGCGAGTGTGGGAGCTGGAGGCAGTCCAGCGGGCTTTGCCCGGGT
CCACAGGGCCGGAAAGGAGGGGCGAGGACAGGGCGGGGGACGCGAGGAGG
GCAAGGGGGAGGGAGGGGCGGGGACGGTGGTGTTTGAGAGTGTTCAGGTG
GGAAGTGGCGAGGTGTCTTTCCGGAAAGCGACCGATTTGGTGCGCACTCT
CCGTCTTTTCGATGCGGCCGCTTCCTCTTCTTCCTCCTCCTCCTCCTCCT
CCTCCTCCTCCTTCTCCTCCTCCTCCTCCTTCTCCTTCTCCTCCGCGCCA
AGTTGTCTGGGCCGCTTCTATTCCTCCGAGAGGGCGAAAGAAGGAGTGTT
CGTCGCGAGGGCCACGGCCATCCCCGGTGCGAGCAAGGGATTGAGGCGGT
GGGCGTTGATGCCCGTGAGGATTTTCCGGCAGGAAGGCCGGGAGAAGCTG
GCTCGAGGGCAGCGAAGGACGAAAAAAGAGAAGATGGGAGGTAAGAAAAG
AATAAAAGGCAAGGAGACTACCTTTAGAAAGCGGCCAAAAAAGAAGAAGG
GGGGTAAGAGGAGAAAGGGCGGGCGGAAGGGCAGGAGGAAGGTGGAGACC
AGCGGGAAGGTGGGGCAGGAAGGCCGGGACGCCTCTCCTCCGAGCGGGGA
GGGCAAGCGCGGCGGGAGGATGATGGAAGTGGCCTATGCAGAGACGGTCC
TTCGCCCCCTTCCCGGTTGTGTGTGGACTGGGGATCTCTGCCTCACTGCC
TCTTGGCGAGACCCCCGGCACGGAGGGGACGACGGCGTCCACGTGCAGGT
CACATGGCACCGCCTGCCCTCCCCCGGCACCTCTCTGCCTTCCTCCTTCC
AAAGAGAAGTGGCAGCCGCCTTGGTGCACGAAGCCCGGAAGCTGGTAGCG
CGTGAGATGGTCATCCACCGGGCCCGTGAGCGCCAACAGGGACAGCTCGC
CCAGGATGCGGCGCGGGCGCTCCAGGAGAAGAAGAAAAAAGAACGGCAGC
TCCTCTTGAACCCGCCTCCCGACAAGAAGAAGTGGAAGAAAATGCAACGA
CAGGGAGGGAAAGAGGCGGGCCCGGGAAGGTGGCAGCCGAGCGCGGATTT
GGCGGCGCGGCGCAACCCCCGGCGCGGAGGATGAGGCTAATGTCCTCTTC
TCCGCCTTTAGGGCCCCGCCCACGGCCCGCGTGTGCAGGTCCTTGGCGTC
CATGGCTCATGGCTGGACGTATGTTGTGGTAGGGAGCAGGGCGAGCATGC
AGCGCCCCCAGGACTAGGGCATCGGGGGAAGAGGGAGGGGGGAGGCGGAG
AGAGGACGGGAATCATCGGAGCCGGAGGGAAAGCCCCGCCCGAATAGGCG
GGAAGACGACAAAGCCTGCGAGCGTGGCGTGCCTGGCTTTTGCGTGTAGT
GGCATGAAAGCCTTGAGGCATCCCAAAGAGGGTTCTATCTCGGATAGACT
CGGGCCATGGGCGGGTGGGGGGGGAGGGCAAGCGCGCAAGGGACAGGGTG
TGATGACGCGGGACTTGCCAAACAATATGGGCGGTCCTGCCGAGATGTCT
CTTTTTTCCTTCAGCTTGTCCCTCCTCGGGAATTTGAGTGAAGCGGTGGT
CGCTGCAGCGTGGAGAGGGACGGGGGGGGGCGCGTGAAGACTAGAGAGGG
AGAGGGTAGGGGAGGCCGGAGGGGCGAGGGAGGGACACCGCCCCGTGACA
AAAGCACGCA

Coding sequence (CDS) from alignment at CM002470.1:369438..371947-

>rna7068 ID=rna7068|Name=rna7068|organism=Nannochloropsis gaditana|type=CDS|length=1623bp|location=Sequence derived from alignment at CM002470.1:369438..371947- (Nannochloropsis gaditana)
ATGGTCTGCAATCGCGTGTTTCTCCTTTTTGTCCTTGTCCTCTTTCACCT
CCCCACCGCCCATCGCGCCATCGAAATCAATTGGACGCCGGCCGACGGCG
AGGGCACAGGTCCCATGCCAGTATCGAAACGTTATCGTGATCAAATGGAG
AAATTGCAACAGTTGGAGGCAGAGCAGGTAAGCCGAGACCGGGCACGGGC
AGGGGCCTCGGCCCATCCCCCCCCTGCTTCCTCTAGCATGCCCTCCGCGC
AGAAATCTGCCGTCCAGCAGCGCAGTGTATTGGGAAGTTTGTTTTTTGGA
GTTTGTCGTCATCCTCTGAGCACGGCCACGCTCGCGGCCACGGTCTGGGC
CGGCTACAGGCTCCGACGTGCTGCCCGCGAAACAGGGTGCTTGGTCTCCA
AATCGCCGCATTTTTCGGTTTGGGAGCCCCCGCTGGGGTATGTGGCCCAT
CTTTTGAACGAGGATATTCCAGCACTCATGTTAGAAGACTCCATGGCGAG
TGTGGGAGCTGGAGGCAGTCCAGCGGGCTTTGCCCGGGTCCACAGGGCCG
GAAAGGAGGGGCGAGGACAGGGCGGGGGACGCGAGGAGGGCAAGGGGGAG
GGAGGGGCGGGGACGGTGGTGTTTGAGAGTGTTCAGGTGGGAAGTGGCGA
GGTGTCTTTCCGGAAAGCGACCGATTTGGTGCGCACTCTCCGTCTTTTCG
ATGCGGCCGCTTCCTCTTCTTCCTCCTCCTCCTCCTCCTCCTCCTCCTCC
TTCTCCTCCTCCTCCTCCTTCTCCTTCTCCTCCGCGCCAAGTTGTCTGGG
CCGCTTCTATTCCTCCGAGAGGGCGAAAGAAGGAGTGTTCGTCGCGAGGG
CCACGGCCATCCCCGGTGCGAGCAAGGGATTGAGGCGGTGGGCGTTGATG
CCCGTGAGGATTTTCCGGCAGGAAGGCCGGGAGAAGCTGGCTCGAGGGCA
GCGAAGGACGAAAAAAGAGAAGATGGGAGGTAAGAAAAGAATAAAAGGCA
AGGAGACTACCTTTAGAAAGCGGCCAAAAAAGAAGAAGGGGGGTAAGAGG
AGAAAGGGCGGGCGGAAGGGCAGGAGGAAGGTGGAGACCAGCGGGAAGGT
GGGGCAGGAAGGCCGGGACGCCTCTCCTCCGAGCGGGGAGGGCAAGCGCG
GCGGGAGGATGATGGAAGTGGCCTATGCAGAGACGGTCCTTCGCCCCCTT
CCCGGTTGTGTGTGGACTGGGGATCTCTGCCTCACTGCCTCTTGGCGAGA
CCCCCGGCACGGAGGGGACGACGGCGTCCACGTGCAGGTCACATGGCACC
GCCTGCCCTCCCCCGGCACCTCTCTGCCTTCCTCCTTCCAAAGAGAAGTG
GCAGCCGCCTTGGTGCACGAAGCCCGGAAGCTGGTAGCGCGTGAGATGGT
CATCCACCGGGCCCGTGAGCGCCAACAGGGACAGCTCGCCCAGGATGCGG
CGCGGGCGCTCCAGGAGAAGAAGAAAAAAGAACGGCAGCTCCTCTTGAAC
CCGCCTCCCGACAAGAAGAAGTGGAAGAAAATGCAACGACAGGGAGGGAA
AGAGGCGGGCCCGGGAAGGTGGCAGCCGAGCGCGGATTTGGCGGCGCGGC
GCAACCCCCGGCGCGGAGGATGA

Synonyms

Publications