rna7063, rna7063 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna7063
Unique Name	rna7063
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2373
Alignment location	CM002470.1:356376..357874 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100137g18.26.mrna
Orig protein id	gnl\|cribi\|Naga_100137g18.26
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002470.1	supercontig	CM002470.1:356376..357874 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100137g18	gene6829	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna7063	rna7063-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM23624.1	cds7046	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002470.1:356376..357874+
coding sequence from alignment at CM002470.1:356376..357874+

mRNA sequence

>rna7063 ID=rna7063|Name=rna7063|organism=Nannochloropsis gaditana|type=mRNA|length=2373bp
GCCTAAGTCATATACCCGGACAAAACATGCCTTCCCCCTGTATAAATATT
AAGTCTCGCGCCTTCACCGCACAGGGGTGCATGAAGACCGCCCAGGGGCA
CGTGGAGGGCCCAGCGCCTGAGTCTTGCACTGGACTGGATCAAGATGCTC
ATCTTCCTTTTCAGTCACCCTCGCCTCCGCTTCCACAAGATTTGACTCGT
AGTCAGCTCTATTCGATGTTACGACACATACAAGAGCAGACAGACGGAAA
AGCACTTGTTGGTCACGCGCTCCACCACATCCTGTCCCTGGCGACTGGAT
CGACCCCACACCCACCGCCCAAGAAGCAGAAGTCGGCCAGGGGGTTCGAC
TTCAGTCGATTTGGGACCCGTCACATTGCTATACAGTTCAGCTACGAGGG
CGGTCCCTACAACGGCCTGACCTCCAACGGGCCCAACGAGGAAGAGTCGG
TGGAGGCGCAGCTCCTGATGGCGTGCATCAAGACCAAGCTCATCCCGGAC
AGGGCCTCCGCCTGCGTCTCTCGCTGTGGACGAACAGACAGAGGTGTCAA
TGCGCTGCGGCAGGTCGTGGGTTTACGCGTGCGTTCCATCTTGTCGACGC
CCTCTACCTCTCCCTGGCCCCCCGCCTGTGCCTCGTCCTCGAGCCCGTGC
GCAAGCCCAGATCAGCATGCACCCAGAGTCATTCCCGATGCGAATGGCGA
CGCTGATTCTTACAATGAGCATGCAGAGACCACAGTCACAGGCGGCTTCT
TCAAAGAGGAAGCGGAGGATCCGGCTCTGGACCCAGCCGCCCTCGCTGCC
GGGGGGAACATTTGGTCGGCCTCGTACGACACCCGCACGGAGGGAGAGCT
CGATTACACAACGCTTCTCAACCGCGTCCTTCCCTTGGATATCCGCGTGC
TGGGCTGGGCGCCTGTCCCTGACGGGTTTTCCGCCCGCTTTTGCTGCTCC
TACCGCACCTACCGATATTTCTTCGACGGCGACGGCTACGACTTAGGCCG
CATGTCCGCCGCTGCCGGGCGTTTGGTGGGAGAGCACGACTTTCGAAACT
TCTGTAAAATGGACGTGACGACGGTGCAGAGCTTTGTGCGGGTGGTGCGG
GAGGCTACGGTCTTGACGGCGGGGGAGTGGGGATGGGCGTTGGACTCCAG
GGGACCCATGCCGGGCCCATCGTCCACGCCCGCCCGCCGCGTGTGCTGCC
TGCAGATCCAAGGCCAAGCTTTCCTCTGGCACATGGTCCGGTGCATCATG
GCCGTGCTCTTCGCCGTGGGCCGGGGCCAGGAGGAGGTGGGCGTGGTGGA
CGACCTCCTCGACGTCTCCCGCTACCCCGGGAAGCCTCTCTACGCGCTCG
CCTCCGAGCACGCCCTGGTCCTCCACGACTGCCACTTTGAGCGCCTGCGC
TTCCACCACCAACCCTCGGCGCTCTTCCGGCTTTGGACAGAGCTGCGGCT
GGCTTGGGGCCAGACGGCCGTCCGTCTGGCCAGGCTGCAGGATCAGATGG
GTTACGTGGGGGAGCTGGCTGTGCGTAAAGCCGCCCTGGACGGGTGGGTG
GACGCAGAGCTAGGCATGGGTCGCTTCCAGGGGAGTCGATTCCAGAAACA
GGAAAAGAAGAAAAAGGGCAAGAGGAGAGAGGCGGGGGGAGGGGAGGGAG
CGGGGACGGCGGGAGGGGGGGGAGGAGAGGGAGGGAGTAAGACTTGTGAG
GCGATGAACAACGAATCCGGCTCGGTCCATGGGGTGAGTGACAGAGGAGG
CGAGGCGGAAGACGAGAAGAGCGTCGGAAAGAAGGAAGATACCGTGCTGA
TGACGTGGCGGGATGCGCTGGCCTACCTCTCGGCGCAGGGAATCGTTCCC
GACCTGGAGGTGAGCAAGAAGAAAAAGGGCATCTGGACGCCCTACGTGCC
CCTGAAAGATCGTCCTCTGGGCAAAACCTACGAAGAGGCCGTGTTGGGGA
TGGGGACTAAGAAACGGGAGCTCTACGAGCAGGCGCAACGGAAGAGAAAG
GCTGCCGAGACGAAGGGAGGCATGGAGGCATTTTTCCACAACATGCGAGG
GACCTCCCCCGGCCCCTCGCTCAGTAGTAGCGGACGCAAAAGCCCTCATG
ACAAGAACGTGATCAATGATGACGTGAGCGCGGCCAAGAGGAAACCTCAC
CGCACCAGTGATAGCGAGCTCAACCGTCTCAATCATCTTGCCGCCTCGAG
CTCTCACGATGGAGCTAATATCAATAGTCAAGCGCGATCGGAAAATGATT
TACTCAGTCATAAGGGCTTGGGACATGGAGGTAAAAGTGCAGTGCAGCAT
GCGACAGCATGGCCAAATTAGAAGTCCAATTCATACAGAAACAGCTAAAG
TATTTTTACGCAGAATCTGATGT

protein sequence of rna7063

>rna7063-protein ID=rna7063-protein|Name=rna7063|organism=Nannochloropsis gaditana|type=polypeptide|length=314bp
MDANIISHTTDMILRESMLGLRPSCWSCLRFHSFVLLVTMCIGLRDSSQI
IDYDAVVLTTDRAQHSRPEVSFPGDVPVVEGVVRLALPAGLDGNGTDSAS
TCVAQLNKTCFGLCMQTLRIDQLGPLQNLTSLAVNPVSPRVPRPSATPNP
CDCPRGLGVYLAANRSARWTFPGAMPPRSFNVSMSPDGTLLVRHAQTLGE
RRKCTYTFQVASGVVMGLEAGDGTKKPKKRSSFPVWATILIAVAGVFSLS
ALAFAVLRRLQQPAPSSSPKERQHRHRSRQRHGGKEERKKVRINGTGPAD
SLLEAVEEGQDESG

mRNA from alignment at CM002470.1:356376..357874+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna7063 ID=rna7063|Name=rna7063|organism=Nannochloropsis gaditana|type=mRNA|length=1499bp|location=Sequence derived from alignment at CM002470.1:356376..357874+ (Nannochloropsis gaditana)
TTCAACCTATGGATGCAAACATAATCTCTCACACCACAGACATGATTTTG
AGGGAAAGTATGCTAGGGCTGCGACCGTCCTGCTGGTCCTGCCTACGTTT
CCATTCTTTCGTGCTCCTGGTGGTGAGTACCCTGCTGTGGAGGGCCCGAC
TATGCCTTGCGTGATTCACTTACTTTCTTTGTCCTTCGCGGGTTCCTACA
CACAGACAATGTGCATCGGCCTTCGAGACAGCAGTCAGATTATCGATTAC
GACGCTGTCGTCCTGACGACTGACAGGGCACAGCACTCCCGCCCGGAAGT
GTCATTCCCGGGAGACGTGCCCGTTGTAGAGGGCGTCGTGCGCCTCGCCC
TGCCCGCGGGCCTCGACGGGAATGGCACAGATAGTGCCTCGACATGTGTG
GCTCAGCTGAATAAAACCTGCTTCGGGCTATGCATGCAAACTTTGCGGAT
AGACCAGCTCGGCCCCCTTCAGAATTTGACCTCCCTCGCAGTGAACCCGG
TCTCGCCCCGCGTCCCCCGGCCCTCTGCCACTCCGAATCCCTGCGACTGT
CCGCGTGGCCTGGGCGTGTACCTCGCCGCAAATCGCTCCGCAAGGTGGAC
ATTCCCTGGAGCGATGCCCCCTCGGTCCTTCAATGTCTCAATGAGCCCCG
ACGGCACGCTGCTTGTGCGGCATGCTCAGACGTTGGGAGAGCGACGGAAG
TGCACCTACACTTTCCAAGTGGCCTCGGGCGTCGTCATGGGCCTAGAGGC
CGGGGATGGAACGAAGAAGCCTAAGAAGAGGTCCTCGTTCCCGGTGTGGG
CGACGATCTTGATCGCGGTGGCTGGCGTCTTCTCCCTGAGCGCCCTAGCC
TTCGCAGTCCTCAGGAGACTGCAGCAGCCGGCGCCATCAAGCTCACCCAA
GGAACGACAACACCGGCACCGGTCGAGACAAAGacatggggggaaggagg
agcggaaaAAGGTCCGAATCAACGGGACCGGGCCGGCGGATTCCCTCCTG
GAGGCTgtagaggaggggcaggacgaGTCCGGGTGACAGTGCGCGCTCGA
CCACGCGGAGGCGCGCAGAAAAGGGCCCGTGGACACAGCCAAGGATCAGG
AGGGGCGTCTGGCATGGGAGGGTCTGAAAGGCGACCCTGGTCCGAGGATA
GGGCCCAGGCCGGGCGGGGCGTCAGAGAAAAGCGTGTGTGGCGAACAAGA
CGTCGGGGGTACGGTTGGCCGGAAGATCTTTGTTCACCACGTCAGAGTGG
TGCGTGGCGGTAAGATAAGGTTCAAATTTCATGACAGAGGAAGCGGGTTG
CGTGAAAAGCAAATGCGAAAGGGGCAGGCATGTCTCCTTGTCAATTCTAT
GTGTGTATGCCTTTTGCCCGCCCTAATTGTACAATGTCTGTGGCAAAAGC
ACCatcaaaagaagaaaaggcaaTGTCTAGTCCCTCGTCGCTACAAGCAC
ATGTGAATCGGTCAGCGCTAGACTTAGCTGAGGTTTCCTCGGTGCGAGC

Coding sequence (CDS) from alignment at CM002470.1:356376..357874+

>rna7063 ID=rna7063|Name=rna7063|organism=Nannochloropsis gaditana|type=CDS|length=1890bp|location=Sequence derived from alignment at CM002470.1:356376..357874+ (Nannochloropsis gaditana)
ATGGATGCAAACATAATCTCTCACACCACAGACATGATTTTGAGGGAAAG
TATGCTAGGGCTGCGACCGTCCTGCTGGTCCTGCCTACGTTTCCATTCTT
TCGTGCTCCTGGTGACAATGTGCATCGGCCTTCGAGACAGCAGTCAGATT
ATCGATTACGACGCTGTCGTCCTGACGACTGACAGGGCACAGCACTCCCG
CCCGGAAGTGTCATTCCCGGGAGACGTGCCCGTTGTAGAGGGCGTCGTGC
GCCTCGCCCTGCCCGCGGGCCTCGACGGGAATGGCACAGATAGTGCCTCG
ACATGTGTGGCTCAGCTGAATAAAACCTGCTTCGGGCTATGCATGCAAAC
TTTGCGGATAGACCAGCTCGGCCCCCTTCAGAATTTGACCTCCCTCGCAG
TGAACCCGGTCTCGCCCCGCGTCCCCCGGCCCTCTGCCACTCCGAATCCC
TGCGACTGTCCGCGTGGCCTGGGCGTGTACCTCGCCGCAAATCGCTCCGC
AAGGTGGACATTCCCTGGAGCGATGCCCCCTCGGTCCTTCAATGTCTCAA
TGAGCCCCGACGGCACGCTGCTTGTGCGGCATGCTCAGACGTTGGGAGAG
CGACGGAAGTGCACCTACACTTTCCAAGTGGCCTCGGGCGTCGTCATGGG
CCTAGAGGCCGGGGATGGAACGAAGAAGCCTAAGAAGAGGTCCTCGTTCC
CGGTGTGGGCGACGATCTTGATCGCGGTGGCTGGCGTCTTCTCCCTGAGC
GCCCTAGCCTTCGCAGTCCTCAGGAGACTGCAGCAGCCGGCGCCATCAAG
CTCACCCAAGGAACGACAACACCGGCACCGGTCGAGACAAAGacatgggg
ggaaggaggagcggaaaAAGGTCCGAATCAACGGGACCGGGCCGGCGGAT
TCCCTCCTGGAGGCTgtagaggaggggcaggacgaGTCCGGGTGAATGGA
TGCAAACATAATCTCTCACACCACAGACATGATTTTGAGGGAAAGTATGC
TAGGGCTGCGACCGTCCTGCTGGTCCTGCCTACGTTTCCATTCTTTCGTG
CTCCTGGTGACAATGTGCATCGGCCTTCGAGACAGCAGTCAGATTATCGA
TTACGACGCTGTCGTCCTGACGACTGACAGGGCACAGCACTCCCGCCCGG
AAGTGTCATTCCCGGGAGACGTGCCCGTTGTAGAGGGCGTCGTGCGCCTC
GCCCTGCCCGCGGGCCTCGACGGGAATGGCACAGATAGTGCCTCGACATG
TGTGGCTCAGCTGAATAAAACCTGCTTCGGGCTATGCATGCAAACTTTGC
GGATAGACCAGCTCGGCCCCCTTCAGAATTTGACCTCCCTCGCAGTGAAC
CCGGTCTCGCCCCGCGTCCCCCGGCCCTCTGCCACTCCGAATCCCTGCGA
CTGTCCGCGTGGCCTGGGCGTGTACCTCGCCGCAAATCGCTCCGCAAGGT
GGACATTCCCTGGAGCGATGCCCCCTCGGTCCTTCAATGTCTCAATGAGC
CCCGACGGCACGCTGCTTGTGCGGCATGCTCAGACGTTGGGAGAGCGACG
GAAGTGCACCTACACTTTCCAAGTGGCCTCGGGCGTCGTCATGGGCCTAG
AGGCCGGGGATGGAACGAAGAAGCCTAAGAAGAGGTCCTCGTTCCCGGTG
TGGGCGACGATCTTGATCGCGGTGGCTGGCGTCTTCTCCCTGAGCGCCCT
AGCCTTCGCAGTCCTCAGGAGACTGCAGCAGCCGGCGCCATCAAGCTCAC
CCAAGGAACGACAACACCGGCACCGGTCGAGACAAAGacatggggggaag
gaggagcggaaaAAGGTCCGAATCAACGGGACCGGGCCGGCGGATTCCCT
CCTGGAGGCTgtagaggaggggcaggacgaGTCCGGGTGA

Synonyms

Publications