rna7053, rna7053 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna7053
Unique Name	rna7053
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1398
Alignment location	CM002470.1:328569..330442 +

Link to JBrowse

Properties


Property Name	Value
Product	electron transfer flavoprotein subunit beta
Orig transcript id	gnl\|cribi\|Naga_100165g8.9694.mrna
Orig protein id	gnl\|cribi\|Naga_100165g8.9694
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002470.1	supercontig	CM002470.1:328569..330442 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100165g8	gene6819	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna7053	rna7053-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM23642.1	cds7036	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002470.1:328569..330442+
coding sequence from alignment at CM002470.1:328569..330442+

mRNA sequence

>rna7053 ID=rna7053|Name=rna7053|organism=Nannochloropsis gaditana|type=mRNA|length=1398bp
ATGATGCTTCGTCGAGGCCTTTGGTCGACATCTTCCCGACTTCAAGGCAA
CATCAGGGCGGCAGCGGGGCGGGCGGGGCATATTCGCTTAACTACCCAAG
CTGCTCCGGTCACGAACCTGGTCCATGCTTTTTCGAACTCCACATTGTCC
ACTCTACCGCATCAGGGCCCCTGTCGTCCTATTCCGGCCTGGTCCACCCA
CCGCTCCCTCCCTATCCGCGCACTCTCCGCCTCCGCCGGCCAGGATTTCA
TCCTGAATGTGCCGAGCATGGGTGACTCAATTACCGAGGGTACCATCGTG
AATTGGCAGAAGAAGGTGGGGGACTGGGTGGACGCGGACGACGTTATCGT
GGTTCTGGAGACGGACAAAGTGAGCGTCGACGTGCGGGCCCCCCGCTCTG
GCATCATCACGGAGGTGATTGGCGCCGAAGACGATACGGTGGGCGTAGGC
GTGCCTCTGGCCAAGATTGATACGACGGCAGCCAAGCCCGAGGGGGCGGC
ACAATCCTCTGCCCCCCCGCCCACCCCACCCCCTCCCCCTCCCAAAGCCG
AAGCCGCCGCTGCGCCTCCTCCTCCTTCTTCTCCTCCGCCGCCATCCCCC
CCTTCAACCCCCCCAAAGCCCCCCACGCCTGCACCAGCCCCCGTGGCGCC
GGGAGGGGCCAGCACTGGAGGTCCCTCAGCTCCTGGCAACCGCTCAGAAA
CTCGGGTAAAGATGAACCGGATGCGTCTTCGCATCGCGGAACGTCTGAAG
AGCGCGCAAAACACGGCGGCCATGCTCACCACCTTCCAGGAAGTCGACAT
GGGCAATCTGATGGACATGCGGAAGGCCTACAAGGAGGAATTCGAGAAGG
TGCACGGGGTCAAGTTGGGCTTCATGTCCGCCTTCGTCAAAGCCTCTACC
GCCGCTTTGCAGGAGATCCCCGCCGTAAACGCTTTCATCGACGATGGCAC
CAAGGAGATCGTCTACAGGGACTACTGCGACGTTTCCGTCGCTGTCGCTT
CGCCCGCGGGCCTGGTGGTGCCTGTGTTGCGGAATGCCGAGCGCATGAGC
TTCGCGGGGGTAGAAAGACAGATCGCCATGTACGGGAAGAAGGCCAAGGA
GGGTGCTTTGGCCCTGGAGGACATGGCGGGGGGGACCTTCACTATCTCAA
ACGGCGGTGTTTTCGGGAGCCTGCTCGGCACGCCCATCATTAACCCGCCC
CAGTCAGCGATCCTGGGCATGCATGCCACCAAAATGAGGGCCGTGGTGGG
GAAGGACGGGCAGGTGATGGCCCGGCCCATGATGTATTTAGCACTCACTT
ACGACCATCGACTGATTGATGGTCGTGAGGCCGTCACATTTTTGAAGTCG
GTCGCCGCCAAGATCGAGGACCCTCGGCGCATGGTTCTGGAGCTTTGA

protein sequence of rna7053

>rna7053-protein ID=rna7053-protein|Name=rna7053|organism=Nannochloropsis gaditana|type=polypeptide|length=387bp
MPILRSRRDDSRTMGSVVQRCLVLIFVVRQVQVVKWSKAGTVSRRAEDRG
SIAMHLHTKYDSIFATSIYRKNPAVYLLQPFHSTTTSTMRILVGVKRVID
YAVKVRVAADKKGVELNNVKHSMNPFCEIAVEEAVRLKEKKFATEIVAVS
VGTKQAQETLRTALAMGVDRGIHVETALRADQELQPLAVAKMLAKLVDKE
KAGLVILGKQSIDGDNAQTAPMLAALLGWPQATFAAGVEPVDENKALKVE
RETDTGSEVLKVNLPAVLSTDLRLNTPRYATIPNIMKAKKKPMELLSPEK
LGVDVTPKTSVISVAEPGKRKAGIMVESVDELLDKLKNEAKYRGYDQRLY
PGKRVGKHVCVGFMRRCEKERKIWSEGRERGPGGVVE

mRNA from alignment at CM002470.1:328569..330442+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna7053 ID=rna7053|Name=rna7053|organism=Nannochloropsis gaditana|type=mRNA|length=1874bp|location=Sequence derived from alignment at CM002470.1:328569..330442+ (Nannochloropsis gaditana)
ATGCCTATTCTACGCTCACGCAGGGATGACAGCCGAACAATGGGTAGTGT
CGTGCAAAGGTGTCTGGTTTTGATTTTTGTAGTCAGACAAGTACAAGTCG
TGAAGTGGAGCAAGGCGGGAACAGTAAGCAGAAGAGCcgaggacaggggg
aggTTAAGTTTTGAAAGAAGGGGCCCAAGGGTTTGCTAATCGCACGAGTA
TTGCAATGCATCTTCATACCAAATATGATTCGATCTTTGCCACTTCCATC
TACAGAAAAAATGTAGTTATTTCAATTTTGCCCCGTTCTTCATTTGCATT
CGGTTGGACCTTTTACGATAAAATATGTCACCGCTTGAGTTCTCCAACAA
TATTTCACCATCTAATTTATCGCCTTTAAGAAGGTGGCATTATAGCGGTG
ATTCAGCATACTGAACGCTTTAATGCACGTTTTCTCAATGTGTCTAGTCT
TATTTCCTGttcgcctcctgggcccATGTGCTCCTGTAACGGTCGCCGCC
TTAATCTTCTTCCATTTGGTCATAGGGGACATGGTCCGCCACAGGCACCT
GGCTTTCCATTGGATGATGCATCGGGCTTTTGGTATTTCTCATTATCGTT
TCACTTTGTCACTATCAGCCTAGTAGCAGAGGAACGGGTCTTCAGGCCTG
ATAACATCCTCGTCTTTATCCTGTGTCGGACGCAGGAGCAGTAGCCAGCG
GTATATCTCCTTCAGCCCTTTCAtagcaccaccacctcaaCAATGCGTAT
TCTGGTTGGCGTGAAGCGTGTGATTGACTATGCTGTCAAAGTGCGCGTTG
CAGCGGACAAGAAAGGTACAGTGTTGTGGAACGGCAGCATGTGGGCTGCG
GCCAGAAATACGGGGCATATACTCTCCTATGACAATAGCTTAGCTTTCAT
CAGACCGCATCCTCGCAAAGTTTTCGAATAATGCAGCCATACTGCTCTTC
TTTCCATTTTACTGCTATACAGGGGTGGAACTCAACAACGTCAAGCATTC
CATGAATCCCTTTTGCGAGAtcgccgtggaggaagcggtgcgcctgaaag
aaaagaaatttgCCACGGAGATCGTCGCCGTCTCGGTAGGGACTAAGCAG
GCACAGGAGACCCTCAGAACTGCCTTGGCAATGGGCGTGGACCGAGGTAT
CCATGTGGAGACAGCTTTGCGGGCCGACCAGGAACTCCAACCCTTGGCTG
TAGCGAAGATGCTGGCAAAAttggtggacaaggagaaagcaGGGCTGGTC
ATCTTAGGGAAGCAGTCCATCGACGGGGACAACGCTCAGACTGCTCCCAT
GCTGGCTGCCCTCTTGGGCTGGCCTCAAGCGACTTTCGCTGCGGGGGTAG
AGCCTGTGGATGAGAATAAGGCGTTGAAGGTGGAGCGGGAAACAGACACG
GGCTCTGAGGTACTGAAAGTCAACCTGCCGGCCGTCCTCTCCACGGACCT
GCGCCTGAACACGCCCCGGTATGCGACCATACCCAACATCatgaaggcga
agaagaagccgATGGAGTTGCTGAGCCCTGAGAAGCTGGGAGTGGACGTG
ACGCCCAAGACCTCGGTGATATCCGTGGCGGAGCCCGGTAAACGGAAAGC
AGGGATCATGGTTGAGAGCGTCGACGAGCTGTTGGACAAGCTGAAGAACG
AGGCTAAGGTTTTGTGAGACGGGGGggtgccgagggagggccgggggggg
gggaagaagcacaTCTGGCGCACGTAGATTAAGTACAGAGGGTACGACCA
AAGATTATATCCTGGAAAGCGCGTTGGAAAACATGTGTGCGTAGGCTTCA
TGCGGAGAtgtgaaaaggaaaggaagatctggagtgaaggaagggaaaga
ggccctggcggcgtGGTGGAATAG

Coding sequence (CDS) from alignment at CM002470.1:328569..330442+

>rna7053 ID=rna7053|Name=rna7053|organism=Nannochloropsis gaditana|type=CDS|length=5820bp|location=Sequence derived from alignment at CM002470.1:328569..330442+ (Nannochloropsis gaditana)
ATGCCTATTCTACGCTCACGCAGGGATGACAGCCGAACAATGGGTAGTGT
CGTGCAAAGGTGTCTGGTTTTGATTTTTGTAGTCAGACAAGTACAAGTCG
TGAAGTGGAGCAAGGCGGGAACAGTAAGCAGAAGAGCcgaggacaggggg
agTATTGCAATGCATCTTCATACCAAATATGATTCGATCTTTGCCACTTC
CATCTACAGAAAAAATCCAGCGGTATATCTCCTTCAGCCCTTTCAtagca
ccaccacctcaaCAATGCGTATTCTGGTTGGCGTGAAGCGTGTGATTGAC
TATGCTGTCAAAGTGCGCGTTGCAGCGGACAAGAAAGGGGTGGAACTCAA
CAACGTCAAGCATTCCATGAATCCCTTTTGCGAGAtcgccgtggaggaag
cggtgcgcctgaaagaaaagaaatttgCCACGGAGATCGTCGCCGTCTCG
GTAGGGACTAAGCAGGCACAGGAGACCCTCAGAACTGCCTTGGCAATGGG
CGTGGACCGAGGTATCCATGTGGAGACAGCTTTGCGGGCCGACCAGGAAC
TCCAACCCTTGGCTGTAGCGAAGATGCTGGCAAAAttggtggacaaggag
aaagcaGGGCTGGTCATCTTAGGGAAGCAGTCCATCGACGGGGACAACGC
TCAGACTGCTCCCATGCTGGCTGCCCTCTTGGGCTGGCCTCAAGCGACTT
TCGCTGCGGGGGTAGAGCCTGTGGATGAGAATAAGGCGTTGAAGGTGGAG
CGGGAAACAGACACGGGCTCTGAGGTACTGAAAGTCAACCTGCCGGCCGT
CCTCTCCACGGACCTGCGCCTGAACACGCCCCGGTATGCGACCATACCCA
ACATCatgaaggcgaagaagaagccgATGGAGTTGCTGAGCCCTGAGAAG
CTGGGAGTGGACGTGACGCCCAAGACCTCGGTGATATCCGTGGCGGAGCC
CGGTAAACGGAAAGCAGGGATCATGGTTGAGAGCGTCGACGAGCTGTTGG
ACAAGCTGAAGAACGAGGCTAAGTACAGAGGGTACGACCAAAGATTATAT
CCTGGAAAGCGCGTTGGAAAACATGTGTGCGTAGGCTTCATGCGGAGAtg
tgaaaaggaaaggaagatctggagtgaaggaagggaaagaggccctggcg
gcgtGGTGGAATAGATGCCTATTCTACGCTCACGCAGGGATGACAGCCGA
ACAATGGGTAGTGTCGTGCAAAGGTGTCTGGTTTTGATTTTTGTAGTCAG
ACAAGTACAAGTCGTGAAGTGGAGCAAGGCGGGAACAGTAAGCAGAAGAG
CcgaggacagggggagTATTGCAATGCATCTTCATACCAAATATGATTCG
ATCTTTGCCACTTCCATCTACAGAAAAAATCCAGCGGTATATCTCCTTCA
GCCCTTTCAtagcaccaccacctcaaCAATGCGTATTCTGGTTGGCGTGA
AGCGTGTGATTGACTATGCTGTCAAAGTGCGCGTTGCAGCGGACAAGAAA
GGGGTGGAACTCAACAACGTCAAGCATTCCATGAATCCCTTTTGCGAGAt
cgccgtggaggaagcggtgcgcctgaaagaaaagaaatttgCCACGGAGA
TCGTCGCCGTCTCGGTAGGGACTAAGCAGGCACAGGAGACCCTCAGAACT
GCCTTGGCAATGGGCGTGGACCGAGGTATCCATGTGGAGACAGCTTTGCG
GGCCGACCAGGAACTCCAACCCTTGGCTGTAGCGAAGATGCTGGCAAAAt
tggtggacaaggagaaagcaGGGCTGGTCATCTTAGGGAAGCAGTCCATC
GACGGGGACAACGCTCAGACTGCTCCCATGCTGGCTGCCCTCTTGGGCTG
GCCTCAAGCGACTTTCGCTGCGGGGGTAGAGCCTGTGGATGAGAATAAGG
CGTTGAAGGTGGAGCGGGAAACAGACACGGGCTCTGAGGTACTGAAAGTC
AACCTGCCGGCCGTCCTCTCCACGGACCTGCGCCTGAACACGCCCCGGTA
TGCGACCATACCCAACATCatgaaggcgaagaagaagccgATGGAGTTGC
TGAGCCCTGAGAAGCTGGGAGTGGACGTGACGCCCAAGACCTCGGTGATA
TCCGTGGCGGAGCCCGGTAAACGGAAAGCAGGGATCATGGTTGAGAGCGT
CGACGAGCTGTTGGACAAGCTGAAGAACGAGGCTAAGTACAGAGGGTACG
ACCAAAGATTATATCCTGGAAAGCGCGTTGGAAAACATGTGTGCGTAGGC
TTCATGCGGAGAtgtgaaaaggaaaggaagatctggagtgaaggaaggga
aagaggccctggcggcgtGGTGGAATAGATGCCTATTCTACGCTCACGCA
GGGATGACAGCCGAACAATGGGTAGTGTCGTGCAAAGGTGTCTGGTTTTG
ATTTTTGTAGTCAGACAAGTACAAGTCGTGAAGTGGAGCAAGGCGGGAAC
AGTAAGCAGAAGAGCcgaggacagggggagTATTGCAATGCATCTTCATA
CCAAATATGATTCGATCTTTGCCACTTCCATCTACAGAAAAAATCCAGCG
GTATATCTCCTTCAGCCCTTTCAtagcaccaccacctcaaCAATGCGTAT
TCTGGTTGGCGTGAAGCGTGTGATTGACTATGCTGTCAAAGTGCGCGTTG
CAGCGGACAAGAAAGGGGTGGAACTCAACAACGTCAAGCATTCCATGAAT
CCCTTTTGCGAGAtcgccgtggaggaagcggtgcgcctgaaagaaaagaa
atttgCCACGGAGATCGTCGCCGTCTCGGTAGGGACTAAGCAGGCACAGG
AGACCCTCAGAACTGCCTTGGCAATGGGCGTGGACCGAGGTATCCATGTG
GAGACAGCTTTGCGGGCCGACCAGGAACTCCAACCCTTGGCTGTAGCGAA
GATGCTGGCAAAAttggtggacaaggagaaagcaGGGCTGGTCATCTTAG
GGAAGCAGTCCATCGACGGGGACAACGCTCAGACTGCTCCCATGCTGGCT
GCCCTCTTGGGCTGGCCTCAAGCGACTTTCGCTGCGGGGGTAGAGCCTGT
GGATGAGAATAAGGCGTTGAAGGTGGAGCGGGAAACAGACACGGGCTCTG
AGGTACTGAAAGTCAACCTGCCGGCCGTCCTCTCCACGGACCTGCGCCTG
AACACGCCCCGGTATGCGACCATACCCAACATCatgaaggcgaagaagaa
gccgATGGAGTTGCTGAGCCCTGAGAAGCTGGGAGTGGACGTGACGCCCA
AGACCTCGGTGATATCCGTGGCGGAGCCCGGTAAACGGAAAGCAGGGATC
ATGGTTGAGAGCGTCGACGAGCTGTTGGACAAGCTGAAGAACGAGGCTAA
GTACAGAGGGTACGACCAAAGATTATATCCTGGAAAGCGCGTTGGAAAAC
ATGTGTGCGTAGGCTTCATGCGGAGAtgtgaaaaggaaaggaagatctgg
agtgaaggaagggaaagaggccctggcggcgtGGTGGAATAGATGCCTAT
TCTACGCTCACGCAGGGATGACAGCCGAACAATGGGTAGTGTCGTGCAAA
GGTGTCTGGTTTTGATTTTTGTAGTCAGACAAGTACAAGTCGTGAAGTGG
AGCAAGGCGGGAACAGTAAGCAGAAGAGCcgaggacagggggagTATTGC
AATGCATCTTCATACCAAATATGATTCGATCTTTGCCACTTCCATCTACA
GAAAAAATCCAGCGGTATATCTCCTTCAGCCCTTTCAtagcaccaccacc
tcaaCAATGCGTATTCTGGTTGGCGTGAAGCGTGTGATTGACTATGCTGT
CAAAGTGCGCGTTGCAGCGGACAAGAAAGGGGTGGAACTCAACAACGTCA
AGCATTCCATGAATCCCTTTTGCGAGAtcgccgtggaggaagcggtgcgc
ctgaaagaaaagaaatttgCCACGGAGATCGTCGCCGTCTCGGTAGGGAC
TAAGCAGGCACAGGAGACCCTCAGAACTGCCTTGGCAATGGGCGTGGACC
GAGGTATCCATGTGGAGACAGCTTTGCGGGCCGACCAGGAACTCCAACCC
TTGGCTGTAGCGAAGATGCTGGCAAAAttggtggacaaggagaaagcaGG
GCTGGTCATCTTAGGGAAGCAGTCCATCGACGGGGACAACGCTCAGACTG
CTCCCATGCTGGCTGCCCTCTTGGGCTGGCCTCAAGCGACTTTCGCTGCG
GGGGTAGAGCCTGTGGATGAGAATAAGGCGTTGAAGGTGGAGCGGGAAAC
AGACACGGGCTCTGAGGTACTGAAAGTCAACCTGCCGGCCGTCCTCTCCA
CGGACCTGCGCCTGAACACGCCCCGGTATGCGACCATACCCAACATCatg
aaggcgaagaagaagccgATGGAGTTGCTGAGCCCTGAGAAGCTGGGAGT
GGACGTGACGCCCAAGACCTCGGTGATATCCGTGGCGGAGCCCGGTAAAC
GGAAAGCAGGGATCATGGTTGAGAGCGTCGACGAGCTGTTGGACAAGCTG
AAGAACGAGGCTAAGTACAGAGGGTACGACCAAAGATTATATCCTGGAAA
GCGCGTTGGAAAACATGTGTGCGTAGGCTTCATGCGGAGAtgtgaaaagg
aaaggaagatctggagtgaaggaagggaaagaggccctggcggcgtGGTG
GAATAGATGCCTATTCTACGCTCACGCAGGGATGACAGCCGAACAATGGG
TAGTGTCGTGCAAAGGTGTCTGGTTTTGATTTTTGTAGTCAGACAAGTAC
AAGTCGTGAAGTGGAGCAAGGCGGGAACAGTAAGCAGAAGAGCcgaggac
agggggagTATTGCAATGCATCTTCATACCAAATATGATTCGATCTTTGC
CACTTCCATCTACAGAAAAAATCCAGCGGTATATCTCCTTCAGCCCTTTC
AtagcaccaccacctcaaCAATGCGTATTCTGGTTGGCGTGAAGCGTGTG
ATTGACTATGCTGTCAAAGTGCGCGTTGCAGCGGACAAGAAAGGGGTGGA
ACTCAACAACGTCAAGCATTCCATGAATCCCTTTTGCGAGAtcgccgtgg
aggaagcggtgcgcctgaaagaaaagaaatttgCCACGGAGATCGTCGCC
GTCTCGGTAGGGACTAAGCAGGCACAGGAGACCCTCAGAACTGCCTTGGC
AATGGGCGTGGACCGAGGTATCCATGTGGAGACAGCTTTGCGGGCCGACC
AGGAACTCCAACCCTTGGCTGTAGCGAAGATGCTGGCAAAAttggtggac
aaggagaaagcaGGGCTGGTCATCTTAGGGAAGCAGTCCATCGACGGGGA
CAACGCTCAGACTGCTCCCATGCTGGCTGCCCTCTTGGGCTGGCCTCAAG
CGACTTTCGCTGCGGGGGTAGAGCCTGTGGATGAGAATAAGGCGTTGAAG
GTGGAGCGGGAAACAGACACGGGCTCTGAGGTACTGAAAGTCAACCTGCC
GGCCGTCCTCTCCACGGACCTGCGCCTGAACACGCCCCGGTATGCGACCA
TACCCAACATCatgaaggcgaagaagaagccgATGGAGTTGCTGAGCCCT
GAGAAGCTGGGAGTGGACGTGACGCCCAAGACCTCGGTGATATCCGTGGC
GGAGCCCGGTAAACGGAAAGCAGGGATCATGGTTGAGAGCGTCGACGAGC
TGTTGGACAAGCTGAAGAACGAGGCTAAGTACAGAGGGTACGACCAAAGA
TTATATCCTGGAAAGCGCGTTGGAAAACATGTGTGCGTAGGCTTCATGCG
GAGAtgtgaaaaggaaaggaagatctggagtgaaggaagggaaagaggcc
ctggcggcgtGGTGGAATAG

Synonyms

Publications