rna7038, rna7038 (mRNA) Nannochloropsis gaditana

Overview
Namerna7038
Unique Namerna7038
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2617
Alignment locationCM002470.1:298597..299074 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100191g8.7759.mrna
Orig protein idgnl|cribi|Naga_100191g8.7759
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002470.1supercontigCM002470.1:298597..299074 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100191g8gene6804Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7038rna7038-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23649.1cds7021Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7038 ID=rna7038|Name=rna7038|organism=Nannochloropsis gaditana|type=mRNA|length=2617bp
CGATTGTGCCCGGTTGTCGACTGCCGAGGCCGCCGAACGCTTCAATCCAA
TGGTAAGGCCAGGGCACCACCAAATAGTCTTCCAATGTATCGGCTATGTG
CGCATGAGTGTGACAGGAACACGCGTAAGTTGCATTTTTCCTCGGGCTCC
AGAATCCTCCAGACTCCTCGCTCGTTCAGAGACATGCGCCTGGCGTGGGC
AACGGTTCGACCTCCCCTGGGAAGGTCCGCGCTTCCCGAGGTGTTAACTT
TACAAACGAGCACGATCACAATGCTCACCTCCGAACCTTTAACATCACAG
AGTGAATACCCTTTACATGTCCTGAATAGCCTAGCCGCGTTCTCGTGCTC
ATATTATTTATTGCGCTTAGGTTGGGCTTCTGGACCTAATGGCCGATTTG
GAGGACCTGGAGATCTTCTCTATCTCCCTTGGAGGCCTGCTTATCGTCAT
TTCCCTTATACTGTGTTGCTCGGCAGCTTGCCTAGCATGCTGTGGTGGCG
CTTTCACCCCGCTCTGTTGTTGGTCTGGTTGGATCCTTGCATGCTGCTCC
TGGAGGGACAGCTCTTATCGCACCATTGGAGACAGGAATTTTACTACAAT
AACAGTGATCCCGCCGCCACCTGTCGCCGTCGCCCCTTACAACAATATGA
ATTCGAGATCATATCCTGTCATCGGAACGGTGGTGGAGGAGCGCTCTGGC
CCCTCTCAAGCCTACCATAGTCAGGCAGAGATGGAGCTCTCCAAAGGGAT
TCTTTCCGGCACCGTGGAAGGCGTGGTGGTGGAAGGCAGCGCCCCGCCCG
CCCCGCTCGCATCCCTGCCCCAGTGTCTGCCTCCATCGGATGCTTCCCTT
CCTCACCACGCCCCTTCCTCGCATGGCCATGCAGCCCATGTCATAATGGC
CGACCTGCATGCCACTCCCCCCCCCCAGACGTCTGTCCCCCGGGACTGGG
GGTTTTTGGTCCTTTTTCTCCTCCAAGCCTGCTTCCTCATCACCCTCGCT
CTTCGCCTGGGCCTTCCCTCCCTCGGACTCTGGGAGCACGCCTTGGTCGA
CGACGCCAGTCGGACCGCGCCCCTCGCCCACTCTCCCGAGACCGTCGCCG
TCGCTCGCAACCTCCTCTGCCTGGCGGCGGGCCTTGGTCTGGTCGCGAAC
GTCCTGTCCTTTGTGTGGTTGGGGTTCATGCTCAATCTGTCCACAGCCCT
TATCACCAGCACCGTTTTTCTCAGCATAATGAGCGCCGGCCTCCTCGCCC
TCCTCTCCCTCCTCTCCGGCCACCTGATCGGCTGCCTGCTCTTCGCCTCC
CTGGCCGTCGCCGGCCTCTGTCTCCTCCGCGAGGACCCGTCTCGCGTCTT
GGTCTCTTCTAGCATCCTGGGGACCGCCTGTCGCGCCGTGGCCGAGTCTC
GGAATCTTTTCGGGGCCGCCTACCTCCTCGTGGCTCTGCACTTTCTCTGG
GTCGTGATATGGGCCGTGGCCGCCACGGGCGTGTATACTACCGTCGCTGC
CGAGTCCCACGGGAATCACTTGCAGTCCGGTCGCCAGTATGGAGCCGGGC
AGGAGGCGCTTCTAGGCTTCTTTCTGCTCTTCTCCCTGTACTGGGGCGCT
AGCGTCTGTCAGAACACCTTGCGCTGCACCGTGGTCGGGGCCGTGGCGGC
CTGGTGGTATGTTCCCGGCCCGGCCCGGGATTCCGTGAGCCTAGCTTTGG
CTCGGGCGACGGGGCCCTCGCTGGGAAGCGTTTGTAAGGGCTCATTGGCG
GTCTCGTTGATCGAGACGTGCAGGGTCGGCCTGCGCGGCCTGGGGGGCGT
GGGCTTGGGCGGGAGCGAACGGGGGCCGGGTTGCTGTCCTTGCTGCCTGT
GCCCGGGGTGCTGTTTCTGTGGCTGCCGCTGGGTGTGTGGGTGTGTGCTG
GACTACCTGCTGGGTTGCGTGGAGGCGGCCTGGCGGGCCTTCAACCGGTT
CGCCTTCGTCTTCGTAGGGGTCTGGGGCTACCCGTACAGCGAAGCTGCCC
GTCTGGCGCTTCGTTTGTTCGAAGCGAGGGGATGGGAAGTGATCCTCAAC
GATTATCTGATCGGCAATGTCCTCTTCCTCGGCTGCATGCTCATGGGCGG
CGGCACGGCCTTTTTAGGGGTCATGACAACGCGGCTCCTGCCCGAGGCCT
TCGAGGCCCTCCCCGCCTCCGCCACCTTCGTCGCCCTGGCGGGCTTCCTG
ATCGGTCTGGGTAATTGCCTGCTCCTTGTGAGCGTGGTGTCGTCGGCCGT
GGACACGGTCTTCGTCTGCTTTGCGGCAAGTCCTCACGTCTTGCAAACAA
ATCGCCCAGCGGAGTACGCGCATTTGCGCCATGTATTTGACCAATGGAGG
GAGAGAGGTGTTGTAGTGGATGTGGGCTGCTCACAGGATGGGCGAGGGGA
GAGGGTGCCGTTGAATGTGGCTCAGGTGTCGATATGAGGTAACGAAGAGC
GGGGAGGAATGAGAGGAGAGTGGTGATGATGTTGGGAGAAGGAACAAGGG
CACTAGAAGAATGCCATGTCTTCGACAGGGGGGCTAGATTGAAGAAAGAT
TATACAGTGCATTGTTTGATAGGAAAGCCCAAGAGGATGAAAGTAATCAA
GACTTCTGAGAACGGAA
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protein sequence of rna7038

>rna7038-protein ID=rna7038-protein|Name=rna7038|organism=Nannochloropsis gaditana|type=polypeptide|length=94bp
MLKPIHWKTIWWCPGLTIGLKRSAASAVDNRAQSGARPVPLPGPGKTISN
TAQNAPNASYTLCGRCGSFSGLGKGLGGGSAVLLQASSRVSESA
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mRNA from alignment at CM002470.1:298597..299074+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7038 ID=rna7038|Name=rna7038|organism=Nannochloropsis gaditana|type=mRNA|length=478bp|location=Sequence derived from alignment at CM002470.1:298597..299074+ (Nannochloropsis gaditana)
ATGTTAAAGGTTCGGAGGTGAGCATTGTGATCGTGCTCGTTTGTAAAGTT
AACACCTCGGGAAGCGCGGACCTTCCCAGGGGAGGTCGAACCGTTGCCCA
CGCCAGGCGCATGTCTCTGAACGAGCGAGGAGTCTGGAGGATTCTGGAGC
CCGAGGAAAAATGCAACTTACGCGTGTTCCTGTCACACTCATGCGCACAT
AGCCGATACATTGGAAGACTATTTGGTGGTGCCCTGGCCTTACCATTGGA
TTGAAGCGTTCGGCGGCCTCGGCAGTCGACAACCGGGCACAATCGGGAGC
CAGACCTGTGCCCCTTCCTGGGCCTGGAAAGACAATATCAAATACCGCGC
AAAATGCGCCGAACGCTAGCTACACTCTATGTGGCCGGTGTGGTAGCTTC
TCTGGGCTCGGGAAGGGCCTTGGTGGTGGATCAGCCGTGCTGCTCCAAGC
ATCTTCACGTGTAAGTGAAAGCGCCTGA
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Coding sequence (CDS) from alignment at CM002470.1:298597..299074+

>rna7038 ID=rna7038|Name=rna7038|organism=Nannochloropsis gaditana|type=CDS|length=570bp|location=Sequence derived from alignment at CM002470.1:298597..299074+ (Nannochloropsis gaditana)
ATGTTAAAGCCGATACATTGGAAGACTATTTGGTGGTGCCCTGGCCTTAC
CATTGGATTGAAGCGTTCGGCGGCCTCGGCAGTCGACAACCGGGCACAAT
CGGGAGCCAGACCTGTGCCCCTTCCTGGGCCTGGAAAGACAATATCAAAT
ACCGCGCAAAATGCGCCGAACGCTAGCTACACTCTATGTGGCCGGTGTGG
TAGCTTCTCTGGGCTCGGGAAGGGCCTTGGTGGTGGATCAGCCGTGCTGC
TCCAAGCATCTTCACGTGTAAGTGAAAGCGCCTGAATGTTAAAGCCGATA
CATTGGAAGACTATTTGGTGGTGCCCTGGCCTTACCATTGGATTGAAGCG
TTCGGCGGCCTCGGCAGTCGACAACCGGGCACAATCGGGAGCCAGACCTG
TGCCCCTTCCTGGGCCTGGAAAGACAATATCAAATACCGCGCAAAATGCG
CCGAACGCTAGCTACACTCTATGTGGCCGGTGTGGTAGCTTCTCTGGGCT
CGGGAAGGGCCTTGGTGGTGGATCAGCCGTGCTGCTCCAAGCATCTTCAC
GTGTAAGTGAAAGCGCCTGA
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Synonyms
Publications