rna7028, rna7028 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna7028
Unique Name	rna7028
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2214
Alignment location	CM002470.1:280959..283135 +

Link to JBrowse

Properties


Property Name	Value
Product	developmentally regulated gtp binding protein 1
Orig transcript id	gnl\|cribi\|Naga_100030g52.4199.mrna
Orig protein id	gnl\|cribi\|Naga_100030g52.4199
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002470.1	supercontig	CM002470.1:280959..283135 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100030g52	gene6794	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna7028	rna7028-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM23702.1	cds7011	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002470.1:280959..283135+
coding sequence from alignment at CM002470.1:280959..283135+

mRNA sequence

>rna7028 ID=rna7028|Name=rna7028|organism=Nannochloropsis gaditana|type=mRNA|length=2214bp
ATGGGTTCTTCGACCTCGCCGGTGTCCAGGGGGTCAGACTCGGAGTATCA
ACAGCTGTGTGGGGTTGAGGAAGAGCGAGAATGTGATGAACCCCCCCATC
CCACCTCGCGTTTGCTGCCCGGGCACGCAGCTCACGCTGCAGACGCTCCA
AGGACCCCTTGGGAATGGGTTGAGGAAAGTGACAGCGATCAAGAGTATCA
AAGTACCGACACAGACGAAGGACTGCTCCATTTCCTGCCGCCCGCCCCCT
TGTTTGCATGGACAGCTGCTCATCATCCGAAGTCGAGTAGCCCGGTGACC
CACGAAAACCAAGAGCAGCGCTACCGCAGGTGGCTCGAACTGTTTCCACG
CGTGGTAATGTTTCCACCGCCAGTCGTGAAGTGGCTTCCGAAATACACAA
GACATCAGTTTTGGGGGGATTTGCTGGGCGGTTTGACTGTAGCCGTAATG
GTGATCCCTCAAGGCATGTCCTACGCTGTCTTGGCCGAGCTGCCTCCTGT
GTACGGACTCTTCTGCGCGGTGTCCGGCCCCCTCGTCTACACCTTCCTAG
GCTCCTCCCGGCACATCTCCATAGGTCCCGTCGCCCTGGTTTCTTTGAGC
CTGCCCCGCGTCTACGACGTGCTGTACCCTGACCTTTTATCGCTGCCAGA
AGAGGAGGCCAGTGCGGTACGCGTCCACGCCGCCCTGTCCATAGCCTTCG
TTTCCGGCGTCATCCTGTCCGCCCTCGGACTCTTCCGCTTGGGTCTGATC
GCGCATCTCATTCCTCCGGCGGTCATGGTGGGCTTCACCAACGCCGCCGC
ACTAGCTATAGGTGTGAGTCAGATCAAGGAGTTGCTGGGGCTCCAGGGGG
TCCCTCGCTTTGACTACACCTGGCAGTCGGGCTGGTACGTGTTGCGGCAC
TTAGGGGATGGCCAAGCAGCTTCAGCAGGTGTGGGTCTGGGGTGCATTGT
TTTCCTGCTCGCCGCGAAACAGCTCAGAAAAAGATTCATGCAGCGTGCTT
CCCCCGCGGGAACGGGTGTGCCACGGCGCTTCCTGTCTGTGCTGGAAGCC
ATGTACCCCCTCCTTAGCCTGGTCCTGGTGATCGTCACGTCCCTGGTCGC
CCGCCTTCTCCTGAGTCGAGGGGTGGAGATCATTATTGTCAAAAATGTGC
CCGCAGGCTTGCCCTCCCCCGGAGCCCCCCGGTTGGATCGGTTCTGGACC
ATCGTGGAGCACAGTCTGGGCGTTGTTTTGGTGGCCTTTATGGAGGCCTA
TGCCGTGGCCAAAAAATACGCCCTTCAAGAAGGCTACCATCTGAATGTCA
ATCGAGAGCTCCTAAGTCTAGGCGCCGCCAACCTAGGCGCTTCATTTTTT
TCTTCCTACCCTGTGTCAGGCTCCTTCTCTCGGAGTGCAGTCAGCTATTC
GGCTGGAACGCAGACTCAGCTCGCCAATGCCATCAGTGCGGTCTGTGTGA
TGATGGTCCTTTCCTTTTTCGCGCAATTCTTCTATTACCTTCCCCGCGCG
ACTTTGGGTGCTATCATCGAGGTAGCCCTCCTCAATCTTTTGGACTTTGA
GGGCATGAGAAGGGAGTATCGGCGGTCCAAACTCGACGCAATCGTAGCTT
TCGTCACATTTGCAATCACCCTTGCATTTGATACAGAGCTGGGTCTCCTG
GGAGGGATCTCGGCGTCCGCTCTTCTCGTGTACTGGATGCCGCGAGGAGG
GGCGTTTATCATTCGCCTTTATGTCAGACCCAGGTTCAGGAGACATGACA
AATGTAGTATATGTGTCATAGATCTACCTCGCTTGCTTCTTTCTCCAACC
TGGGCTCAACGTCGGCTTACGGACTATTTGAAATCTGCTCGACGGTCTGG
AGGCGCCGCAGGTATGCTCGTGATTTTGTCCTGGCACGAGAAATGGAAAG
ATGAGGAGAAGTCTGGCAGAGATGACAAAGTTTCGTGGGAGGCCAGGAGG
AGGACTGGTCAAATGGACGAGAACCGTGTCCAGGCGATGATCCAGCGGGC
AATGGAGGCGGCGGATGCCGCAGGAGTGCCGCGAGAGATGACGACAATAG
TGGGGCTGCCACTGCCGGGCAAAAGCTGTCAAAGTGTCGATCTCTCTTTG
CTCATGACTGAGGGGCAAAGAAAGGTCGCAGAGAATGTTTTGAGAAGAGC
CAGCTCCATTTCGCTGCTGGCTGCGTACGGAGAGGAACTTATGACGGACT
TGTTGACTAGATGA

protein sequence of rna7028

>rna7028-protein ID=rna7028-protein|Name=rna7028|organism=Nannochloropsis gaditana|type=polypeptide|length=492bp
MSTLQKIAELEAEYAKTQKNKATNYHLGLIKAKLAKLRRELIEPSGGGGG
KGGEGFDVAKSGDTRVGLVGFPSVGKSTLLTKLTGTFSEAASYEFTTLTA
IPGTLHYRGARIQVVDLPGIIEGAKDGKGRGRQVISAARTCNIILVVLDV
AKPATHKILIERELDGFGIRLNQEPPRIMFRKKDKGGINFQAFVPQTTLD
AEAVTAICREYKIHNADVHLRCDATVDQIIDVVEGNRKYMPAVYVLNKID
QISIEELDIISRLPHCVPISAQHGWNLDELIDKVWDECKMIRIYTKPKGQ
IPDYTAPVSLSLLSTHIVLVRRGRHPTCSSHPPHSLPPSTSIGDPPFSSP
LRGRFLQPHPPHPHLLLQVRLGVGLEREAPAPAGGEGAHSGGRGRGPSGE
EERMRRGGRKNTGGAEGCRDGHDCEPVADPTAAEATAIYQGSFCTVEALT
CKGMPVSANQLDREKGSGKEGLSGSTTIVRGGERGEERGWNR

mRNA from alignment at CM002470.1:280959..283135+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna7028 ID=rna7028|Name=rna7028|organism=Nannochloropsis gaditana|type=mRNA|length=2177bp|location=Sequence derived from alignment at CM002470.1:280959..283135+ (Nannochloropsis gaditana)
GGGGGATGAGCCCTCGACCCCAGAGGTTCTGATGCATTGCGCCCCCTCGC
TTGCCAGCCCTTTCCACCGTCCACTCCTTGcgccccgcttcccctcacAG
ACCGCTCTTCGCGCGTGTGGACGTCTCTTGGCATCTGAACGACTATCTCA
TCCGTCaatgcctcctctttccgttCAGCAGTCTTGTGAACAGTCCTAGC
CGATAAGTGAAGAGTTGACACCATTTGCGtgtcgcggaggaagaggaggt
cgaccGCTACATTTCATTGCTGCTTTTCCAGACCAAGAGCATGTCGACAC
TCCAGGTATGACATTTGAGATCATCATTGGCAGCTTTTTCCTTGCTTCAA
ATTTTTGTGGCGTTGACTGCATTGTATTTTCCGTTGTGCCTGTTCGAAGA
ATACTCTCCGGTCACGCGCTTACTCTTTTAATATCAACTTTTCTTCTTAA
CTTTGATATCACTGGTGCTCACCTGCAGAAAATTGCCGAGTTGGAGGCGG
AGTATGCCAAGACTCAGAAGAATAAGGCGACAAATTATCATCTGGGCTTG
ATCAAAGCCAAGCTTGCAAAGCTGAGGCGAGAGCTGATCGAGCCCtcggg
aggcggtggaggaaaagggggtgAGGGCTTTGACGTTGCTAAATCCGGGG
ATACACGCGTGGGCCTTGTGGGCTTTCCCTCCGTGGGAAAGTCTACGTTG
CTGACAAAGCTTACAGGGACGTTCAGCGAGGCGGCTTCCTACGAATTTAC
CACTCTGACTGCCATCCCGGGTACCTTGCACTATCGGGGAGCCCGTATCC
AGGTCGTTGACCTCCCAGGGATCATTGAGGGGgccaaggacgggaagggt
CGTGGGCGACAGGTTATTTCCGCGGCACGGACATGCAACATCATCTTGGT
GGTCTTGGACGTTGCCAAGCCCGCCACGCACAAGATCCTCATCGAGCGTG
AGCTGGACGGCTTCGGCATCAGGTTGAACCAGGAACCCCCTCGCATCATG
TTTCGAAAAAAGGATAAGGGCGGGATCAACTTTCAGGCCTTCGTGCCGCA
GACGACTCTGGATGCGGAGGCGGTGACGGCCATATGCCGGGAGTACAAGA
TCCACAACGCCGACGTGCACTTGCGCTGCGACGCGACGGTGGACCAGATC
ATCGACGTGGTAGAGGGCAACAGGAAGGTGCgacgggaggcggaagaTTC
TCTATGGCGTTGGCTtgtcctcccagcccccttgCCGTCTcccacttccc
ctcccccttctcacttcccattccccttcccctgcccccctccccacccc
gacTCCAGTACATGCCCGCCGTCTATGTCCTGAACAAGATCGATCAGATC
TCCATCGAAGAGCTCGATATCATCAGTCGGCTGCCCCACTGCGTGCCCAT
TTCGGCCCAGCACGGCTGGAATCTGGACGAGCTCATCGACAAGGTTTGGG
ACGAGTGCAAGATGATCCGTATCTACACGAAGCCCAAGGGGCAGATCCCC
GACTATACGGCGCCTGTGAGTCTCAGCCTTCTTTCTACCCATATCGTATT
GGTTCGAAGAGGCAGGCATCCCACCTGTTCCTCTCAcccccctcattccc
ttcccccgtctaCTTCCATAGGTGATCCTCCATTCTCATCACCCCTCCGT
GGAAGATTTCTGCAACCGCATCCACCGcaccctcatctcctccttcaagt
aCGCCTGGGTGTGGGGCTCGAGCGTGAAGCACCAGCCCCagcgggtgggg
aaggagcacattctggcggacgaggacgtggtccAAGTGGTGAAGAAGAG
CGgatgaggagaggaggccggaAGAACACAGGTGGCGCGGAGGGCTGTCG
GGATGGCCATGACTGCGAACCGGTGGCAGATCCTACAGCGGCAGAAGCGA
CAGCAATCTACCAGGGCTCGTTTTGCACAGTTGAAGCGCTCACGTGCAAA
GGGATGCCTGTTTCTGCAAACCAGCTAGAccgagaaaagggaagcgggaa
agaggggctaAGTGGGTCGACGACCATTgtcaggggaggagagcggggcg
aggaaagaggatggaaCAGGTAGAAAGGAGACAGGAATCTCAAAGATGCG
ACGGTGCTTTCAGGACATGGTTGTTTTCCTTGCATACAATTTTTCCGTTA
CTGTTTTTCCGAACGACCCTACTGTTC

Coding sequence (CDS) from alignment at CM002470.1:280959..283135+

>rna7028 ID=rna7028|Name=rna7028|organism=Nannochloropsis gaditana|type=CDS|length=4437bp|location=Sequence derived from alignment at CM002470.1:280959..283135+ (Nannochloropsis gaditana)
ATGTCGACACTCCAGAAAATTGCCGAGTTGGAGGCGGAGTATGCCAAGAC
TCAGAAGAATAAGGCGACAAATTATCATCTGGGCTTGATCAAAGCCAAGC
TTGCAAAGCTGAGGCGAGAGCTGATCGAGCCCtcgggaggcggtggagga
aaagggggtgAGGGCTTTGACGTTGCTAAATCCGGGGATACACGCGTGGG
CCTTGTGGGCTTTCCCTCCGTGGGAAAGTCTACGTTGCTGACAAAGCTTA
CAGGGACGTTCAGCGAGGCGGCTTCCTACGAATTTACCACTCTGACTGCC
ATCCCGGGTACCTTGCACTATCGGGGAGCCCGTATCCAGGTCGTTGACCT
CCCAGGGATCATTGAGGGGgccaaggacgggaagggtCGTGGGCGACAGG
TTATTTCCGCGGCACGGACATGCAACATCATCTTGGTGGTCTTGGACGTT
GCCAAGCCCGCCACGCACAAGATCCTCATCGAGCGTGAGCTGGACGGCTT
CGGCATCAGGTTGAACCAGGAACCCCCTCGCATCATGTTTCGAAAAAAGG
ATAAGGGCGGGATCAACTTTCAGGCCTTCGTGCCGCAGACGACTCTGGAT
GCGGAGGCGGTGACGGCCATATGCCGGGAGTACAAGATCCACAACGCCGA
CGTGCACTTGCGCTGCGACGCGACGGTGGACCAGATCATCGACGTGGTAG
AGGGCAACAGGAAGTACATGCCCGCCGTCTATGTCCTGAACAAGATCGAT
CAGATCTCCATCGAAGAGCTCGATATCATCAGTCGGCTGCCCCACTGCGT
GCCCATTTCGGCCCAGCACGGCTGGAATCTGGACGAGCTCATCGACAAGG
TTTGGGACGAGTGCAAGATGATCCGTATCTACACGAAGCCCAAGGGGCAG
ATCCCCGACTATACGGCGCCTGTGAGTCTCAGCCTTCTTTCTACCCATAT
CGTATTGGTTCGAAGAGGCAGGCATCCCACCTGTTCCTCTCAcccccctc
attcccttcccccgtctaCTTCCATAGGTGATCCTCCATTCTCATCACCC
CTCCGTGGAAGATTTCTGCAACCGCATCCACCGcaccctcatctcctcct
tcaagtaCGCCTGGGTGTGGGGCTCGAGCGTGAAGCACCAGCCCCagcgg
gtggggaaggagcacattctggcggacgaggacgtggtccAAGTGGTGAA
GAAGAGCGgatgaggagaggaggccggaAGAACACAGGTGGCGCGGAGGG
CTGTCGGGATGGCCATGACTGCGAACCGGTGGCAGATCCTACAGCGGCAG
AAGCGACAGCAATCTACCAGGGCTCGTTTTGCACAGTTGAAGCGCTCACG
TGCAAAGGGATGCCTGTTTCTGCAAACCAGCTAGAccgagaaaagggaag
cgggaaagaggggctaAGTGGGTCGACGACCATTgtcaggggaggagagc
ggggcgaggaaagaggatggaaCAGGTAGATGTCGACACTCCAGAAAATT
GCCGAGTTGGAGGCGGAGTATGCCAAGACTCAGAAGAATAAGGCGACAAA
TTATCATCTGGGCTTGATCAAAGCCAAGCTTGCAAAGCTGAGGCGAGAGC
TGATCGAGCCCtcgggaggcggtggaggaaaagggggtgAGGGCTTTGAC
GTTGCTAAATCCGGGGATACACGCGTGGGCCTTGTGGGCTTTCCCTCCGT
GGGAAAGTCTACGTTGCTGACAAAGCTTACAGGGACGTTCAGCGAGGCGG
CTTCCTACGAATTTACCACTCTGACTGCCATCCCGGGTACCTTGCACTAT
CGGGGAGCCCGTATCCAGGTCGTTGACCTCCCAGGGATCATTGAGGGGgc
caaggacgggaagggtCGTGGGCGACAGGTTATTTCCGCGGCACGGACAT
GCAACATCATCTTGGTGGTCTTGGACGTTGCCAAGCCCGCCACGCACAAG
ATCCTCATCGAGCGTGAGCTGGACGGCTTCGGCATCAGGTTGAACCAGGA
ACCCCCTCGCATCATGTTTCGAAAAAAGGATAAGGGCGGGATCAACTTTC
AGGCCTTCGTGCCGCAGACGACTCTGGATGCGGAGGCGGTGACGGCCATA
TGCCGGGAGTACAAGATCCACAACGCCGACGTGCACTTGCGCTGCGACGC
GACGGTGGACCAGATCATCGACGTGGTAGAGGGCAACAGGAAGTACATGC
CCGCCGTCTATGTCCTGAACAAGATCGATCAGATCTCCATCGAAGAGCTC
GATATCATCAGTCGGCTGCCCCACTGCGTGCCCATTTCGGCCCAGCACGG
CTGGAATCTGGACGAGCTCATCGACAAGGTTTGGGACGAGTGCAAGATGA
TCCGTATCTACACGAAGCCCAAGGGGCAGATCCCCGACTATACGGCGCCT
GTGAGTCTCAGCCTTCTTTCTACCCATATCGTATTGGTTCGAAGAGGCAG
GCATCCCACCTGTTCCTCTCAcccccctcattcccttcccccgtctaCTT
CCATAGGTGATCCTCCATTCTCATCACCCCTCCGTGGAAGATTTCTGCAA
CCGCATCCACCGcaccctcatctcctccttcaagtaCGCCTGGGTGTGGG
GCTCGAGCGTGAAGCACCAGCCCCagcgggtggggaaggagcacattctg
gcggacgaggacgtggtccAAGTGGTGAAGAAGAGCGgatgaggagagga
ggccggaAGAACACAGGTGGCGCGGAGGGCTGTCGGGATGGCCATGACTG
CGAACCGGTGGCAGATCCTACAGCGGCAGAAGCGACAGCAATCTACCAGG
GCTCGTTTTGCACAGTTGAAGCGCTCACGTGCAAAGGGATGCCTGTTTCT
GCAAACCAGCTAGAccgagaaaagggaagcgggaaagaggggctaAGTGG
GTCGACGACCATTgtcaggggaggagagcggggcgaggaaagaggatgga
aCAGGTAGATGTCGACACTCCAGAAAATTGCCGAGTTGGAGGCGGAGTAT
GCCAAGACTCAGAAGAATAAGGCGACAAATTATCATCTGGGCTTGATCAA
AGCCAAGCTTGCAAAGCTGAGGCGAGAGCTGATCGAGCCCtcgggaggcg
gtggaggaaaagggggtgAGGGCTTTGACGTTGCTAAATCCGGGGATACA
CGCGTGGGCCTTGTGGGCTTTCCCTCCGTGGGAAAGTCTACGTTGCTGAC
AAAGCTTACAGGGACGTTCAGCGAGGCGGCTTCCTACGAATTTACCACTC
TGACTGCCATCCCGGGTACCTTGCACTATCGGGGAGCCCGTATCCAGGTC
GTTGACCTCCCAGGGATCATTGAGGGGgccaaggacgggaagggtCGTGG
GCGACAGGTTATTTCCGCGGCACGGACATGCAACATCATCTTGGTGGTCT
TGGACGTTGCCAAGCCCGCCACGCACAAGATCCTCATCGAGCGTGAGCTG
GACGGCTTCGGCATCAGGTTGAACCAGGAACCCCCTCGCATCATGTTTCG
AAAAAAGGATAAGGGCGGGATCAACTTTCAGGCCTTCGTGCCGCAGACGA
CTCTGGATGCGGAGGCGGTGACGGCCATATGCCGGGAGTACAAGATCCAC
AACGCCGACGTGCACTTGCGCTGCGACGCGACGGTGGACCAGATCATCGA
CGTGGTAGAGGGCAACAGGAAGTACATGCCCGCCGTCTATGTCCTGAACA
AGATCGATCAGATCTCCATCGAAGAGCTCGATATCATCAGTCGGCTGCCC
CACTGCGTGCCCATTTCGGCCCAGCACGGCTGGAATCTGGACGAGCTCAT
CGACAAGGTTTGGGACGAGTGCAAGATGATCCGTATCTACACGAAGCCCA
AGGGGCAGATCCCCGACTATACGGCGCCTGTGAGTCTCAGCCTTCTTTCT
ACCCATATCGTATTGGTTCGAAGAGGCAGGCATCCCACCTGTTCCTCTCA
cccccctcattcccttcccccgtctaCTTCCATAGGTGATCCTCCATTCT
CATCACCCCTCCGTGGAAGATTTCTGCAACCGCATCCACCGcaccctcat
ctcctccttcaagtaCGCCTGGGTGTGGGGCTCGAGCGTGAAGCACCAGC
CCCagcgggtggggaaggagcacattctggcggacgaggacgtggtccAA
GTGGTGAAGAAGAGCGgatgaggagaggaggccggaAGAACACAGGTGGC
GCGGAGGGCTGTCGGGATGGCCATGACTGCGAACCGGTGGCAGATCCTAC
AGCGGCAGAAGCGACAGCAATCTACCAGGGCTCGTTTTGCACAGTTGAAG
CGCTCACGTGCAAAGGGATGCCTGTTTCTGCAAACCAGCTAGAccgagaa
aagggaagcgggaaagaggggctaAGTGGGTCGACGACCATTgtcagggg
aggagagcggggcgaggaaagaggatggaaCAGGTAG

Synonyms

Publications