rna7026, rna7026 (mRNA) Nannochloropsis gaditana

Overview
Namerna7026
Unique Namerna7026
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1446
Alignment locationCM002470.1:277546..278369 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100030g50.4190.mrna
Orig protein idgnl|cribi|Naga_100030g50.4190
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002470.1supercontigCM002470.1:277546..278369 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100030g50gene6792Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7026rna7026-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23693.1cds7009Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7026 ID=rna7026|Name=rna7026|organism=Nannochloropsis gaditana|type=mRNA|length=1446bp
CTCTGAGGTCAATTTTCTTGCAGAGATCACAGCAGCAATGATTGTCATAG
CCAATAAGACGGAAGCTCAGCGGATACTGTCATTGCTGGAAGATGCGCTA
AATTCTCTAAATTTGTTAGCCGGAATCCCTCTACGTCTGTCGCAAGACCC
AAACCTACACTTCTCCCCAGATGTTTCGAATATTTTGAGCGAACAGCAGG
ATATGGAAGAAAACGTGATGAAGTCGTTTTTAATGCCGCCATTCCCATAT
TCGCCTGCATTGCCGATCCCTGAATCATCTCCTCTTTTTCCACCGCCAGA
AACCGAGTTATCTGCATACCAAAGTCAATCCTCGAACCTATTTCCTTCCA
GGTGTTCCCCCCATTCGTCAGGAAATTCCTCACGTGATACAATGTTGAAA
AACCATCTATCTATTACCCGTCACCTGGTCCGCACAATGCGCCGCTTCCA
TCCTAAAATTGATGCATGTGCTTCGCCTACATTCTCTTTATTCATTGGTG
CCCTTTGCGACCTTAGAAATATTTTGACTCAACGCTTCTCCACTACCTTA
CAAGATGACCTTCGAAGGGTGAATACCCTAGGAAAATTAACGGATAAAGA
GAAACACACGTTTGATAGCCTTGCTTTGCTTCAGCATGTGTCTACCACCA
AAGAGCGCGAACAATCGGAAGAGATTACAACCCTTGAAGGCTTGCGCGAA
AAGCTAGAAACTGAACTAGCTGTACAGGAAGCCCAAAGTAAGGAAGAGAG
GGATAACATTGCCCAGGAACTGAAAAATTCGCTTGACCTCGCCCACACAA
GGCATGCAGCGAAAATTACAGAGCTCAGAAAGTGCCTAGAAGACTTAGTC
CCGATCCTGGCTCAGGAGGCTAAAAAATACGAGTTCACAGAGCAATTGAT
GAAGGAAAAGCAGACACTTCTCGAAGAAAAATTGGCTGATGTAATGCAGA
ATTACGAGGCGGACGTAAAACAAAAGCAGGATGATCTTCGTTGGTTGAGG
GCTACAGCGCGGGAGGAAAAAAATGAATTGCACGCGCTGCGGGAACATTT
TGCGGTGGTAGAGCGCCAGCAAGCTGAACTCAATAACATGGAGCGAGAGC
GGCAAGAACGTGCTTTAGAAGCGGAAGCTCGTATGCGTCATGCTGTTGAG
TGTGCTATTCGGATTCAGTCCGTGTTCCGGAAGCACAAGGCTGTAATGGG
ATATCAAGCGCTCAAGAAATCAGGTAAGCTGGCGGGGGGGGACAAAAAAG
CCAAGAAAAAGAAACCGGGGGTAAAAGCAGGTACTAAGGGCTTTGTCAAG
AAAGCAAACATATCAAAAGCCGCAGTCAGTAACGTATCGAAGAATGAGTC
GGCCACGCCCGTCAGGACACTCAGGAAGGCAGCACATGGCTCAAAAAAAG
AGGGCGCTGGCAGGAAGATAATAAAGAAGACAAAATAGTCCATCCC
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protein sequence of rna7026

>rna7026-protein ID=rna7026-protein|Name=rna7026|organism=Nannochloropsis gaditana|type=polypeptide|length=106bp
MLVKNSTDSEEVLVFISITSDEKIRSPSYDSRGGEESLQEGVFFIRLFVE
LLCPNKTYQISSYYVLKACRKSATAEAAMTRGKYVVVCGKDFMFVISLVS
CLAWAR
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mRNA from alignment at CM002470.1:277546..278369+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7026 ID=rna7026|Name=rna7026|organism=Nannochloropsis gaditana|type=mRNA|length=824bp|location=Sequence derived from alignment at CM002470.1:277546..278369+ (Nannochloropsis gaditana)
GGGTTTGACGCGAAAGCGTGCAGCCTTTGAAGACACGCCTCAGTTGTGTC
GGTTTCGCTGTTCAAATATGCATTTCAAAAAAGCATCCAGTCAACATTGG
CCTTCTCATTGTCTAAACAGGCTACGTGGCGTGCACAATCAGCATCGTGG
CAGAATTATTTGTGCAGGCATGAGAGGAAGAGTTCGTTTCAAGCGTTGGC
TAAGAAATTTGTCACCTTTTTCGCTCTGAAAGTATGTATGTTTTAGACAT
GATTAAGTTACTCCCTTTCTTTCAGAAATCCTGTTCGCCTTCACTCGGGT
GCTCGTCATTTGGGGAATTATTGGTGCCATTTTTGGCTTCTGCCCTCGTT
TTACCTATCCCATTCTTGGTGCAACGACTATCTTTCTGTAAACTATCTTT
GATGTTTATATGTTGGTGAAAAATTCCACCGACTCGGAGGAGGTTTTGGT
TTTCATTTCGATTACATCTGATGAGAAGATACGCTCGCCTTCATATGATT
CAAGAGGCGGTGAAGAAAGCTTGCAAGAAGGTGTCTTCTTCATACGTCTC
TTTGTCGAATTACTTTGCCCCAACAAGACATACCAAATATCTTCCTATTA
TGTTTTAAAGGCTTGCAGGAAGTCAGCGACAGCAGAGGCAGCAATGACAC
GGGGAAAGTATGTTGTGGTATGTGGAAAAGACTTCATGTTTGTCATTTCT
TTGGTTTCCTGCTTGGCCTGGGCCAGATAGCAGCTTGAGCACAACCACTT
AGTCTCTACAATCCAATTACAAAGAGGTTTGCGGCACGAAGGACGTTATG
TAAGGCAACAAAAAGAAGCTGAgt
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Coding sequence (CDS) from alignment at CM002470.1:277546..278369+

>rna7026 ID=rna7026|Name=rna7026|organism=Nannochloropsis gaditana|type=CDS|length=321bp|location=Sequence derived from alignment at CM002470.1:277546..278369+ (Nannochloropsis gaditana)
ATGTTGGTGAAAAATTCCACCGACTCGGAGGAGGTTTTGGTTTTCATTTC
GATTACATCTGATGAGAAGATACGCTCGCCTTCATATGATTCAAGAGGCG
GTGAAGAAAGCTTGCAAGAAGGTGTCTTCTTCATACGTCTCTTTGTCGAA
TTACTTTGCCCCAACAAGACATACCAAATATCTTCCTATTATGTTTTAAA
GGCTTGCAGGAAGTCAGCGACAGCAGAGGCAGCAATGACACGGGGAAAGT
ATGTTGTGGTATGTGGAAAAGACTTCATGTTTGTCATTTCTTTGGTTTCC
TGCTTGGCCTGGGCCAGATAG
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Synonyms
Publications