rna702, rna702 (mRNA) Nannochloropsis gaditana

Overview
Namerna702
Unique Namerna702
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1474
Alignment locationCM002456.1:209537..211180 -

Link to JBrowse

Properties
Property NameValue
ProductProtein of unknown function DUF819
Orig transcript idgnl|cribi|Naga_100200g10.10016.mrna
Orig protein idgnl|cribi|Naga_100200g10.10016
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:209537..211180 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100200g10gene673Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29967.1cds702Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna702rna702-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna702 ID=rna702|Name=rna702|organism=Nannochloropsis gaditana|type=mRNA|length=1474bp
ATGAGAATCCCGGAGCGTCGTGATAACAGCGGAGTTGAGGGTGGGATGAA
GCGCTTTACTCGGAGACGAACCTCTGACATGGAGGCCGCCCATCAAACAT
CCTCTTCGACCCCGCCAATTAATGTTGCTGCGGGTAATGATGAAGCGGTG
GATCTGCCCTCCTCAACCACCTCTCATGCTCAGTCCATGGCGGGCTTCAA
CACCGATTCACAGCACCCGGGCGCGACGTCTCCCCCTCCCACAAAACCTC
CTCGCGTCGTCACCCCAACCACGGCGATGAACGCTGGAAAATCATGGTGG
TGGCCTTGGAAAAACGTTTTCATTGCATTCGGTGTTGCGTTGGTGTTAAG
CGTGACAGTCAAAGGTTTTGGTTCCTTCACGAATATGGAAGACAATGGCT
TTGCCTTGGTCGCCGCCACGGCTCCCGGGTCGCATTGGGGCAATTGGCGG
AGCATGACCCGTTGCGATTGCAAGGCCTTTCAACAATGCACTGCCGCGTT
GGCGAAAGCGAAAACTCTCTCTGCGACCCGCGTCGGCCGCTTCATCCAGC
TTGCGACGTGTCAGCTTGCCACGGGCCAAGATGAAGACTGCCAATTGCAC
GACAAGGAGCTCAAGCGTGGTCTGACCCGCTTTCGTTTCTTCTTCCCTGA
CCTCGTGCTCCGGCTGCGCTTGGCCGCAGATTTCAGGTGGTGGGTTCGGC
TGGGCTGTTATTTCTTGATGTCTTGCGCCTTGTTGGAGATCATTTTCTAC
CTGGTGGAGACGACCCGTCTACGGTGGCACCGGCGACGGACACTAGGGGA
AGACCCAGGAAGCTGGTGGGAAAAGGAGATATCCGTGTGGCTGTTCTTGG
TTGTGTGGCACGAGGCCCTGAGCTACCTGGTCCACTACGTGTACAGCGAC
AGCCACACGATGTGCGACGGGGTCGGCCTCTTCTTTCGGGACGCCATGGC
CCTGTACACCTTGATCCAGGTCTTTACAAGGGCCGTGGTCAAACGCGGTC
CCAATGCCCACCGTGCCTGGCTCCTACAAGCCGAACAGAAATATTTGGCC
CTCCAGCACCGGCCCTGGTGGGTGCAGGTGGTCCGGGACCCGCGTGTGGG
CGCTTTCCATACGTTTTCAGGGGTGGAACTGAAAATTACGGAAGACCCCG
TGGGGTTTGTCAGCAATTTGGTGCTGACCCTCACGAGCATTGCCAAGAAG
GTGTTGAGCTGGTTGCCCTCGGACGTGCAGGCGTTGGTGCCTGGGCTGGG
GGGCGGAAGGCCGGTGGAAGGGTCTTCTTCGTATGGTTCAAGCGGGGGGA
GGGACACGTCGAAAGATGAATAAGCCACATGCGATGAAGTAACAAGGAAG
ATACAGAGGCTGGCAGCGGCCGACGGGAGAAATGCGAAAATACGATCGAA
AAGGAATGCAAAATGCTGGACAGAAAGTCGAAAAAGATGACACCCTCCGT
GGGGATCGCGGAGAGCAACTTGCC
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protein sequence of rna702

>rna702-protein ID=rna702-protein|Name=rna702|organism=Nannochloropsis gaditana|type=polypeptide|length=491bp
MGRVLPSKSHALVITALMIMTSDAFVPPRPRLMPIEHLTGPSIARPTTYA
TKGGPAPLPFRAISDPASFSTKRLAAMGCTQHVASGAIPFTATLMASMQT
SPWWVWSMLLLASTTGVAAERTKIGAALSSPLITMAVALVACNLGFLPSA
APAYTSVNKFLVPLAIPLLLLDANLFKVLTQTGRLLRSFVLGSIGTVLGT
LIAAWFVPLGSLGAAGKEGWMIAAALASRHIGGAVNFVAVSETLGMSAEL
TAAGIAADNLVVSFYFGLLFWLARDLEPEDEVLHANGGGGGGPKGTREPV
EQATWSATEPPSLGYLKALSLASLLCMVGTWVSEGLLQGAISSIPVISLL
SVATATLFPRACSSVTEPAGHLAVILMNLFFSVTGAQGKLSQVLVTAPRL
FLLSAVQLVFHLTFLLGAGRGLLRLPLKELLVASNANVGGPTTAAAMAGS
KRWKSLVLPGILTGILGYASATFIGLALGRSVLAKIVTRGV
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mRNA from alignment at CM002456.1:209537..211180-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna702 ID=rna702|Name=rna702|organism=Nannochloropsis gaditana|type=mRNA|length=1644bp|location=Sequence derived from alignment at CM002456.1:209537..211180- (Nannochloropsis gaditana)
CAACACTAAATTACAGAAATGGGGCGGGTGCTGCCTTCCAAAAGTCATGC
TCTAGTGATAACTGCCCTTATGATCATGACAAGCGATGCTTTTGTTCCGC
CGCGGCCAAGACTGATGCCGATTGAGCACTTAACGGGACCTTCAATCGCG
CGCCCGACCACATATGCTACCAAGGGTGGGCCTGCCCCCCTCCCTTTCCG
AGCTATTTCCGATCCCGCCAGCTTCTCGACGAAACGATTAGCAGCAATGG
GGTGTACACAGCACGTGGCAAGCGGTGCCATTCCGTTCACCGCCACTTTG
ATGGCAAGCATGCAGACTTCTCCGTGGTGGGTATGGAGCATGCTGCTTCT
TGCGTCCACCACTGGTGTTGCCGCCGAGCGCACCAAAATCGGAGCCGCAC
TTTCCTCCCCCCTCATAACCATGGCAGTGGCCCTCGTTGCTTGCAACCTC
GGCTTCTTGCCCAGTGCAGCCCCTGCGTACACGTCCGTCAACAAGTTTCT
GGTGCCACTGGCCATCCCCCTCCTCCTCCTCGACGCTAATCTGTTCAAGG
TCCTGACGCAGACCGGCCGCTTGCTACGGTCCTTCGTCCTAGGAAGCATT
GGAACTGTCCTAGGAACGCTGATTGCAGCATGGTTCGTACCTTTAGGGAG
TTTAGGGGCTGCTGGTAAGGAAGGGTGGATGATAGCAGCAGCACTTGCCA
GTCGACACATTGGAGGGGCGGTGAACTTTGTGGCAGTGAGCGAAACCTTG
GGCATGTCTGCAGAATTGACGGCCGCGGGCATTGCAGCGGACAACTTGGT
GGTTTCCTTCTACTTTGGCCTTCTCTTCTGGTTGGCACGAGACTTGGAGC
CAGAAGACGAGGTGCTACATGCAAACGGGGGGGGCGGGGGAGGTCCCAAA
GGTACGCGTGAGCCGGTCGAGCAAGCTACCTGGAGTGCGACAGAGCCGCC
TTCCTTAGGGTACTTGAAGGCCCTAAGCTTGGCAAGTCTTCTCTGCATGG
TTGGGACTTGGGTCAGTGAGGGGCTTCTCCAGGGGGCAATTTCCTCCATC
CCAGTCATCTCCCTCCTCTCCGTCGCCACCGCCACGCTCTTTCCCCGTGC
CTGCAGCAGCGTCACCGAGCCAGCCGGCCACCTGGCCGTCATCCTCATGA
ATCTTTTCTTCTCGGTCACGGGAGCCCAAGGAAAACTCAGTCAAGTCCTT
GTCACCGCCCCTCGTCTCTTCCTCCTTTCCGCCGTGCAACTTGTCTTCCA
TCTGACCTTCCTCCTTGGCGCCGGCCGAGGGCTTCTCCGCCTCCCGCTCA
AAGAACTCCTGGTGGCTTCCAACGCCAATGTGGGTGGACCTACCACGGCG
GCGGCGATGGCGGGAAGCAAGCGATGGAAGAGTTTGGTCCTTCCGGGTAT
CCTGACCGGAATTTTGGGCTACGCCTCCGCCACATTCATTGGTCTTGCGT
TGGGAAGGTCGGTGTTGGCAAAGATAGTGACCAGGGGGGTGTGAGCAGAG
GAAAACGAGCCGGGAGAAAGGGGAGGGGGTGACAATGTACATAAATCCTA
CAGGGTAGTCAGTGCGAAAATACAACGAGTGTACCGAGTCTATACCACTA
TAACGACCTGAAACTAAGGCAAGTTGCTCTCCGCGATCCCCACG
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Coding sequence (CDS) from alignment at CM002456.1:209537..211180-

>rna702 ID=rna702|Name=rna702|organism=Nannochloropsis gaditana|type=CDS|length=1476bp|location=Sequence derived from alignment at CM002456.1:209537..211180- (Nannochloropsis gaditana)
ATGGGGCGGGTGCTGCCTTCCAAAAGTCATGCTCTAGTGATAACTGCCCT
TATGATCATGACAAGCGATGCTTTTGTTCCGCCGCGGCCAAGACTGATGC
CGATTGAGCACTTAACGGGACCTTCAATCGCGCGCCCGACCACATATGCT
ACCAAGGGTGGGCCTGCCCCCCTCCCTTTCCGAGCTATTTCCGATCCCGC
CAGCTTCTCGACGAAACGATTAGCAGCAATGGGGTGTACACAGCACGTGG
CAAGCGGTGCCATTCCGTTCACCGCCACTTTGATGGCAAGCATGCAGACT
TCTCCGTGGTGGGTATGGAGCATGCTGCTTCTTGCGTCCACCACTGGTGT
TGCCGCCGAGCGCACCAAAATCGGAGCCGCACTTTCCTCCCCCCTCATAA
CCATGGCAGTGGCCCTCGTTGCTTGCAACCTCGGCTTCTTGCCCAGTGCA
GCCCCTGCGTACACGTCCGTCAACAAGTTTCTGGTGCCACTGGCCATCCC
CCTCCTCCTCCTCGACGCTAATCTGTTCAAGGTCCTGACGCAGACCGGCC
GCTTGCTACGGTCCTTCGTCCTAGGAAGCATTGGAACTGTCCTAGGAACG
CTGATTGCAGCATGGTTCGTACCTTTAGGGAGTTTAGGGGCTGCTGGTAA
GGAAGGGTGGATGATAGCAGCAGCACTTGCCAGTCGACACATTGGAGGGG
CGGTGAACTTTGTGGCAGTGAGCGAAACCTTGGGCATGTCTGCAGAATTG
ACGGCCGCGGGCATTGCAGCGGACAACTTGGTGGTTTCCTTCTACTTTGG
CCTTCTCTTCTGGTTGGCACGAGACTTGGAGCCAGAAGACGAGGTGCTAC
ATGCAAACGGGGGGGGCGGGGGAGGTCCCAAAGGTACGCGTGAGCCGGTC
GAGCAAGCTACCTGGAGTGCGACAGAGCCGCCTTCCTTAGGGTACTTGAA
GGCCCTAAGCTTGGCAAGTCTTCTCTGCATGGTTGGGACTTGGGTCAGTG
AGGGGCTTCTCCAGGGGGCAATTTCCTCCATCCCAGTCATCTCCCTCCTC
TCCGTCGCCACCGCCACGCTCTTTCCCCGTGCCTGCAGCAGCGTCACCGA
GCCAGCCGGCCACCTGGCCGTCATCCTCATGAATCTTTTCTTCTCGGTCA
CGGGAGCCCAAGGAAAACTCAGTCAAGTCCTTGTCACCGCCCCTCGTCTC
TTCCTCCTTTCCGCCGTGCAACTTGTCTTCCATCTGACCTTCCTCCTTGG
CGCCGGCCGAGGGCTTCTCCGCCTCCCGCTCAAAGAACTCCTGGTGGCTT
CCAACGCCAATGTGGGTGGACCTACCACGGCGGCGGCGATGGCGGGAAGC
AAGCGATGGAAGAGTTTGGTCCTTCCGGGTATCCTGACCGGAATTTTGGG
CTACGCCTCCGCCACATTCATTGGTCTTGCGTTGGGAAGGTCGGTGTTGG
CAAAGATAGTGACCAGGGGGGTGTGA
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Synonyms
Publications