rna7019, rna7019 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna7019
Unique Name	rna7019
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1734
Alignment location	CM002470.1:255742..257806 +

Link to JBrowse

Properties


Property Name	Value
Product	diacylglycerol o-acyltransferase 2
Orig transcript id	gnl\|cribi\|Naga_100030g42.4196.mrna
Orig protein id	gnl\|cribi\|Naga_100030g42.4196
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002470.1	supercontig	CM002470.1:255742..257806 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100030g42	gene6785	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna7019	rna7019-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM23699.1	cds7002	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002470.1:255742..257806+
coding sequence from alignment at CM002470.1:255742..257806+

mRNA sequence

>rna7019 ID=rna7019|Name=rna7019|organism=Nannochloropsis gaditana|type=mRNA|length=1734bp
ATGCTGCAGACGACATACTCCTTCCGTCTCCTAGCGTGGTTTTTTGGTTC
AGGGGCAGGCCATTCCAGCCCTCTTTCCAGCGCATTGATCACTACATCTT
TATCTAATATCGAGGCAAGCAGTTATGCGCCGCTTTCGTTACCGAAACCA
GCACAAGAAAACCTACCAGAGCCCTTTCATAAGCAGTACGGTTGGCTCAT
TGCAGAACAAGACCGTGCTTTGCACGAGGGGAGCCAAGGAAGTGGAGCCA
AGCCGAACAACCGGTTCAGCACCTGCTGGCGTCAAGCAATGCGTCTTCTA
GCTTCGTCGTGTAAGGATATGGATATGCCGACTAAACAAAGAATCGCATT
ACATCTGGCTAGCTGCCATCTCGAGGAGGGGGGCCGCCAGCCCGTGCGAT
GTCCAGAGAGGGAGAAAGACGTGCGAAACTGTCTAAAAAGAGTGCAAGGA
GATGCTGCATGGTCAACGTACACCGATCTGTTCCTATTTGCGGACAGTTA
TTGCTACAGCCTGCAAACAGATGCATGGCAGACACAGACTGAACTTCTCA
TCAACAAGCTGGGACAAAGCAGTCTGCAGGCGGTGACTCTTCTGGGGGAA
TCGGCACATGTGCAAGACACACTCTTAAAGAACCAACAGGAGTCGACGCT
TTTCCAGAAGGACCTAGCAGACTCCCAGCATCAATTGCATGCAGGTCTGG
AAGCGTCGACGATACAGTTTAGCCGTCTTACCGATGAAGTTGAAACAGGC
TTCGGAGCCATTGGGGAGCAGTATCAGGCTCTTCTAGACATGCAAGAGTC
TAATATACAGCGACAAAAGGAACTTTTGGCTGGATTACAACGAGCCAACG
AAGAAGTCCGCGATTTCACCATGCGTATAGAGGAAGAGTTCGTGAAGGAA
TCCCAGCGCTTTAACTTAGTCAAACAGGTATTGGGGCAAGCTTGTATTAT
CCTGGATGTTGCTTTATATGGTGGGCGACTGGCTTCAATGGCAGTGTGTG
TGGGTGCATGTTGGATACTCGCACCTGCCACCACGGAGTATTATGCAAGT
AAGTGCTCTGCCGTGGCAATTTTACTGACCACCTTGGTAAGTATGGTCCA
CAGCGTAGTTGTAGCTGCGCGGTACATTCTACTGCCAAGCTTGCTTTCAT
CAAAAGTGCTTGTCATTTTGGACACGCTTTTCGACGGCGGTAGCGGAGGG
ATTCGCATCCTGCACTCCCTAGCCGTTGTCGGCGTTCTTCTTTCCCTCTG
GCGACGAATAAGGAGGCCATCGAGGACCATGTGGCAGATCATCACAGGTA
GAAACATTGAAGGATCAAAGAGTAGTAAGTACGGCGACGCGAGTGAGAAC
ACTTGTAATGATAGGCGATTAGGCGATACAGAAGAGATGAGGCTGCGCGC
TGTTTTGCAGAAAGTTGTGCATGGAGGAACCGGAACACAAGTAAAAAGTG
GTGTTAGAAGAAAATGTGAAGGTGTTGAGGAAATAGGAAGAGCCATTTCA
CTGTCGGCAGGCTCATACACTCAGCCACTGGATGCGGCATCTTCGTCTTA
CTCAGGCCTAGTCACTCCTCTTCACAGCGTTTGTAGCAGCGAAGATGGTA
AATTTACTCCCCAGCGACGTTCCGCACGTCTACAGTCCCGAACGTCTTTC
AGTTTCGACAGCTCTGGAAAGCCTTGTAGTAGATTATTGATGAATCGAGG
AATCCTTGAGACTTTGTCCGAGAGCAGTGAATAG

protein sequence of rna7019

>rna7019-protein ID=rna7019-protein|Name=rna7019|organism=Nannochloropsis gaditana|type=polypeptide|length=470bp
MTFKVWHFANKIRIFTIACSLQYHGSLLLMLLLLLLLLLLNKESHSRRDV
ARIHKQEQTVGVRTPVQGSDCLQLLNAQLWVLRLQVRTIRLLDELILAST
RPDMACDVERVSSSTTSGPSVNLSRSTAPATNMPGTPIVVRPDPCPPGLW
GRLQTWGAVLFLALMASSLYLVVASALYIVIGLGVLGHRVLPSILLGVWV
GQALIPVKKLHQNPAAIKRSWLFREMTNYFEMTLVMEEKLDTRKLYMFAQ
HPHGILPLCPVLSAYFVSDVVPGGKIFCLIHSGIFHLPIVRFFMGEWGAL
TADKESVAKARQEGEHCSIVVGGVAEMFLQSKCKEQVQLRKGFIREALRN
GYDIVPMFHYGATRMYRFIGSASFWRSLSSYLPFPFFLVGGRGSGLTLVP
KRVHLVTVVGSPMNIAALYGAPAGQPVPEPDPAKVDEIYDKWKKKVACMY
YRHRPKWETRDIDFIESSRA

mRNA from alignment at CM002470.1:255742..257806+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna7019 ID=rna7019|Name=rna7019|organism=Nannochloropsis gaditana|type=mRNA|length=2065bp|location=Sequence derived from alignment at CM002470.1:255742..257806+ (Nannochloropsis gaditana)
ACATGCTTGCCAGTGTTGTTCACCCGGTATGCTACAGGATTTCACTATTT
CACGAGGATGACATTCAAAGTTTGGCATTTTGCCAATAAAATTAGAATCT
TCACCATTGCTTGCTCGTTACAATACCATGGATCGTTgttgttgatgttg
ttgttgttgttgttgttgttgttgttgaacAAGGAGTCCCACAGCAGACG
TGACGTCGCTCGCATTCACAAGCAGGAACAAACGGTGGGTGTGAGAACAC
CGGTCCAGGGATCCGATTGTCTGCAGTTACTCAATGCACAATTATGGGTG
CTACGACTGCAAGTCAGAACAATCAGGCTCTTGGTAGGTGGTTTGTGTAG
AACAAGAGAAAGGTGAAATATTACGGTACAATGTCCTACTTGACTCATTC
GCTCACTCTTCCATTAGCGCAGGATGAGCTTATTTTGGCCAGTACACGGC
CTGATATGGCATGTGATGTAGAAAGGGTGTCATCATCAACTACATCGGGA
CCCTCTGTCAACTTGTCGAGGTCCACGGCGCCAGCAACGAATATGCCCGG
GACGCCAATTGTGGTGCGCCCTGATCCATGCCCCCCAGGCCTGTGGGGCA
GATTGCAGACTTGGGGTGCTGTCCTATTCCTCGCACTTATGGCCTCATCA
CTCTATCTTGTAGTCGCTTCCGCGCTATACATTGTCATCGGCCTTGGCGT
CCTGGGCCATCGCGTGCTCCCCTCAATTCTGTTGGGAGTTTGGGTGGGCC
AAGCACTTATTCCTGTCAAAAAACTGCATCAAAATCCTGCGGCCATCAAG
CGGTCGTGGTTGTTCAGAGAAATGACGAACTATTTCGAAATGACGCtggt
catggaggagaagctggaTACTCGTAAGCTGTACATGTTCGCGCAGCACC
CTCACGGGATCCTCCCGCTCTGCCCTGTCCTGTCTGCTTACTTCGTGTCG
GACGTCGtgccgggaggaaagataTTCTGTCTGATACACAGGTACGCACA
CTAAGGTTTGTAGATCCAAGATCGTACTGGTCTTAATATGGATGAGAAAA
CGCGGGAGTGGGTTCGAGCTCCATTCCTCCATAAAAATGTTGCTTATGGA
CGCATATAACATCAATATCTTACATATCACGCGCATCCTCCTATATGTAT
GAAAACAGTGGGATTTTTCATCTTCCCATCGTACGCTTTTTCATGGGCGA
GTGGGGTGCGCTTACAGCAGATAAAGAGTCCGTAGCTAAAGCtagacagg
aaggggagcattGCTCGATTGTAGTGGGGGGGGTAGCGGAAATGTTCTTG
CAAAGCAAGTGTAAAGAGCAGGTGCAACTTCGCAAGGGCTTCATCCGTGA
GGCTCTGCGGAACGGGTACGATATAGTCCCTATGTTCCACTACGGGGCAA
CGCGTATGTATCGATTTATcggctccgcctccttctggCGATCTTTGTCC
TCTtatctcccctttcctttctttctcgtcGGAGGCCGGGGTAGTGGGCT
GACGTTGGTGCCGAAACGTGTACATTTGGTGACAGTAGTGGGCTCGCCCA
TGAACATAGCGGCGCTGTACGGCGCGCCCGCGGGACAGCCTGTGCCGGAG
CCAGATCCAGCCAAGGTTGATGAGATATACGATaaatggaagaaaaaggt
TGCCTGCATGTACTATCGTCATCGCCCGAAATGGGAGACCAGGGATATAG
ATTTCATAGAGAGTTCTCGTGCTTAACATTCAAGAAGGAGATTTGCGACA
AGAGGAAAATATTTCCTTAATTGGTAAGACTTTCGACAGTGGTAAGTCAT
GCCATTCATGTCAAGGAAGTCAATGGAAGCTGGTGCACGTTTTGATCTTA
AGCCACCGCTGGGATTTGTTTGGATCCAGATATGTGGTCAGGCGGAACGG
CTCACTCAGAGACACTGTACGGCAACAGACATTGAGATTACGGTCGGCTA
GCCACGTTATCTCAGCTTTTTGAAAGCACCTGCGCAGAGGCCAGATATTT
CTACGTTGAACTTAAACTGTTCAAAAGTAAACGGAAGTGCAACTCAAAGA
CACAGCTGAGAAGAT

Coding sequence (CDS) from alignment at CM002470.1:255742..257806+

>rna7019 ID=rna7019|Name=rna7019|organism=Nannochloropsis gaditana|type=CDS|length=4239bp|location=Sequence derived from alignment at CM002470.1:255742..257806+ (Nannochloropsis gaditana)
ATGACATTCAAAGTTTGGCATTTTGCCAATAAAATTAGAATCTTCACCAT
TGCTTGCTCGTTACAATACCATGGATCGTTgttgttgatgttgttgttgt
tgttgttgttgttgttgttgaacAAGGAGTCCCACAGCAGACGTGACGTC
GCTCGCATTCACAAGCAGGAACAAACGGTGGGTGTGAGAACACCGGTCCA
GGGATCCGATTGTCTGCAGTTACTCAATGCACAATTATGGGTGCTACGAC
TGCAAGTCAGAACAATCAGGCTCTTGGATGAGCTTATTTTGGCCAGTACA
CGGCCTGATATGGCATGTGATGTAGAAAGGGTGTCATCATCAACTACATC
GGGACCCTCTGTCAACTTGTCGAGGTCCACGGCGCCAGCAACGAATATGC
CCGGGACGCCAATTGTGGTGCGCCCTGATCCATGCCCCCCAGGCCTGTGG
GGCAGATTGCAGACTTGGGGTGCTGTCCTATTCCTCGCACTTATGGCCTC
ATCACTCTATCTTGTAGTCGCTTCCGCGCTATACATTGTCATCGGCCTTG
GCGTCCTGGGCCATCGCGTGCTCCCCTCAATTCTGTTGGGAGTTTGGGTG
GGCCAAGCACTTATTCCTGTCAAAAAACTGCATCAAAATCCTGCGGCCAT
CAAGCGGTCGTGGTTGTTCAGAGAAATGACGAACTATTTCGAAATGACGC
tggtcatggaggagaagctggaTACTCGTAAGCTGTACATGTTCGCGCAG
CACCCTCACGGGATCCTCCCGCTCTGCCCTGTCCTGTCTGCTTACTTCGT
GTCGGACGTCGtgccgggaggaaagataTTCTGTCTGATACACAGTGGGA
TTTTTCATCTTCCCATCGTACGCTTTTTCATGGGCGAGTGGGGTGCGCTT
ACAGCAGATAAAGAGTCCGTAGCTAAAGCtagacaggaaggggagcattG
CTCGATTGTAGTGGGGGGGGTAGCGGAAATGTTCTTGCAAAGCAAGTGTA
AAGAGCAGGTGCAACTTCGCAAGGGCTTCATCCGTGAGGCTCTGCGGAAC
GGGTACGATATAGTCCCTATGTTCCACTACGGGGCAACGCGTATGTATCG
ATTTATcggctccgcctccttctggCGATCTTTGTCCTCTtatctcccct
ttcctttctttctcgtcGGAGGCCGGGGTAGTGGGCTGACGTTGGTGCCG
AAACGTGTACATTTGGTGACAGTAGTGGGCTCGCCCATGAACATAGCGGC
GCTGTACGGCGCGCCCGCGGGACAGCCTGTGCCGGAGCCAGATCCAGCCA
AGGTTGATGAGATATACGATaaatggaagaaaaaggtTGCCTGCATGTAC
TATCGTCATCGCCCGAAATGGGAGACCAGGGATATAGATTTCATAGAGAG
TTCTCGTGCTTAAATGACATTCAAAGTTTGGCATTTTGCCAATAAAATTA
GAATCTTCACCATTGCTTGCTCGTTACAATACCATGGATCGTTgttgttg
atgttgttgttgttgttgttgttgttgttgttgaacAAGGAGTCCCACAG
CAGACGTGACGTCGCTCGCATTCACAAGCAGGAACAAACGGTGGGTGTGA
GAACACCGGTCCAGGGATCCGATTGTCTGCAGTTACTCAATGCACAATTA
TGGGTGCTACGACTGCAAGTCAGAACAATCAGGCTCTTGGATGAGCTTAT
TTTGGCCAGTACACGGCCTGATATGGCATGTGATGTAGAAAGGGTGTCAT
CATCAACTACATCGGGACCCTCTGTCAACTTGTCGAGGTCCACGGCGCCA
GCAACGAATATGCCCGGGACGCCAATTGTGGTGCGCCCTGATCCATGCCC
CCCAGGCCTGTGGGGCAGATTGCAGACTTGGGGTGCTGTCCTATTCCTCG
CACTTATGGCCTCATCACTCTATCTTGTAGTCGCTTCCGCGCTATACATT
GTCATCGGCCTTGGCGTCCTGGGCCATCGCGTGCTCCCCTCAATTCTGTT
GGGAGTTTGGGTGGGCCAAGCACTTATTCCTGTCAAAAAACTGCATCAAA
ATCCTGCGGCCATCAAGCGGTCGTGGTTGTTCAGAGAAATGACGAACTAT
TTCGAAATGACGCtggtcatggaggagaagctggaTACTCGTAAGCTGTA
CATGTTCGCGCAGCACCCTCACGGGATCCTCCCGCTCTGCCCTGTCCTGT
CTGCTTACTTCGTGTCGGACGTCGtgccgggaggaaagataTTCTGTCTG
ATACACAGTGGGATTTTTCATCTTCCCATCGTACGCTTTTTCATGGGCGA
GTGGGGTGCGCTTACAGCAGATAAAGAGTCCGTAGCTAAAGCtagacagg
aaggggagcattGCTCGATTGTAGTGGGGGGGGTAGCGGAAATGTTCTTG
CAAAGCAAGTGTAAAGAGCAGGTGCAACTTCGCAAGGGCTTCATCCGTGA
GGCTCTGCGGAACGGGTACGATATAGTCCCTATGTTCCACTACGGGGCAA
CGCGTATGTATCGATTTATcggctccgcctccttctggCGATCTTTGTCC
TCTtatctcccctttcctttctttctcgtcGGAGGCCGGGGTAGTGGGCT
GACGTTGGTGCCGAAACGTGTACATTTGGTGACAGTAGTGGGCTCGCCCA
TGAACATAGCGGCGCTGTACGGCGCGCCCGCGGGACAGCCTGTGCCGGAG
CCAGATCCAGCCAAGGTTGATGAGATATACGATaaatggaagaaaaaggt
TGCCTGCATGTACTATCGTCATCGCCCGAAATGGGAGACCAGGGATATAG
ATTTCATAGAGAGTTCTCGTGCTTAAATGACATTCAAAGTTTGGCATTTT
GCCAATAAAATTAGAATCTTCACCATTGCTTGCTCGTTACAATACCATGG
ATCGTTgttgttgatgttgttgttgttgttgttgttgttgttgttgaacA
AGGAGTCCCACAGCAGACGTGACGTCGCTCGCATTCACAAGCAGGAACAA
ACGGTGGGTGTGAGAACACCGGTCCAGGGATCCGATTGTCTGCAGTTACT
CAATGCACAATTATGGGTGCTACGACTGCAAGTCAGAACAATCAGGCTCT
TGGATGAGCTTATTTTGGCCAGTACACGGCCTGATATGGCATGTGATGTA
GAAAGGGTGTCATCATCAACTACATCGGGACCCTCTGTCAACTTGTCGAG
GTCCACGGCGCCAGCAACGAATATGCCCGGGACGCCAATTGTGGTGCGCC
CTGATCCATGCCCCCCAGGCCTGTGGGGCAGATTGCAGACTTGGGGTGCT
GTCCTATTCCTCGCACTTATGGCCTCATCACTCTATCTTGTAGTCGCTTC
CGCGCTATACATTGTCATCGGCCTTGGCGTCCTGGGCCATCGCGTGCTCC
CCTCAATTCTGTTGGGAGTTTGGGTGGGCCAAGCACTTATTCCTGTCAAA
AAACTGCATCAAAATCCTGCGGCCATCAAGCGGTCGTGGTTGTTCAGAGA
AATGACGAACTATTTCGAAATGACGCtggtcatggaggagaagctggaTA
CTCGTAAGCTGTACATGTTCGCGCAGCACCCTCACGGGATCCTCCCGCTC
TGCCCTGTCCTGTCTGCTTACTTCGTGTCGGACGTCGtgccgggaggaaa
gataTTCTGTCTGATACACAGTGGGATTTTTCATCTTCCCATCGTACGCT
TTTTCATGGGCGAGTGGGGTGCGCTTACAGCAGATAAAGAGTCCGTAGCT
AAAGCtagacaggaaggggagcattGCTCGATTGTAGTGGGGGGGGTAGC
GGAAATGTTCTTGCAAAGCAAGTGTAAAGAGCAGGTGCAACTTCGCAAGG
GCTTCATCCGTGAGGCTCTGCGGAACGGGTACGATATAGTCCCTATGTTC
CACTACGGGGCAACGCGTATGTATCGATTTATcggctccgcctccttctg
gCGATCTTTGTCCTCTtatctcccctttcctttctttctcgtcGGAGGCC
GGGGTAGTGGGCTGACGTTGGTGCCGAAACGTGTACATTTGGTGACAGTA
GTGGGCTCGCCCATGAACATAGCGGCGCTGTACGGCGCGCCCGCGGGACA
GCCTGTGCCGGAGCCAGATCCAGCCAAGGTTGATGAGATATACGATaaat
ggaagaaaaaggtTGCCTGCATGTACTATCGTCATCGCCCGAAATGGGAG
ACCAGGGATATAGATTTCATAGAGAGTTCTCGTGCTTAA

Synonyms

Publications