rna7017, rna7017 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna7017
Unique Name	rna7017
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2293
Alignment location	CM002470.1:250911..252951 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100030g40.4187.mrna
Orig protein id	gnl\|cribi\|Naga_100030g40.4187
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002470.1	supercontig	CM002470.1:250911..252951 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100030g40	gene6783	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna7017	rna7017-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM23690.1	cds7000	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002470.1:250911..252951+
coding sequence from alignment at CM002470.1:250911..252951+

mRNA sequence

>rna7017 ID=rna7017|Name=rna7017|organism=Nannochloropsis gaditana|type=mRNA|length=2293bp
ATTGGCTGCTTAACTTACTGGGCATATGACAACCAAATGTAGATATTTTT
CCTGTTGATGACTATTCATTTATCTACAGGCTTCATGAGTTTTAGAGACG
GACCGTGCAGGCGGCACTAGCCGGCGAAACGCTTAAATTCTGCAGTGGCA
GAGGCAACAGAGCATGTCATTCCCAGGGCGTCCTCGTGGCGCCCTCGAGA
CGCTTGCCAGGTCGACATACTTCGTGAACTTGCCACGGTTAACACTTTCG
GCGGTTTTAACACGCAACAGAAGGCATTTTGGCGCGTCCTCGTCCCCATT
AATTCCTTTGCTTAAAAAGTCGGCGGAAAGACCCTCTCTGGAGGCGCTGA
AATGGTATGCCTGCGGGCCCACCGTCTACGACTCCGCCCATTTGGGCCAC
GCCCGGACCTATGTTTCCCAAGATGTGATACGCCGGGTGCTGACAGATTT
TTTGGGTCAAGACGTAATTTTTGTGATGGGTATTACTGACGTTGATGATA
AAATTCTTCAGCGTGCGATGGAAAGGAAGGAAGACCCTCGTGCTCTAGCT
CGTCGGTACGAAGCCGATTTTTTGGCCGACATGCGGGCTCTCAACGTTCT
GGAGCCATCCGCCCTTGTACGGGTGACAGAACACATCCGGGATATTATAG
ACTACATCAAGCAGATCGATACAAACGGAATGGCCTACGAAACCTCCAGC
GGCGTGTACTTCGACGTGAGGGCGTTTTCGAAGAAGTTTGCCTACGGAAA
GCTAAAAACAAAGGACAGAGTGCGGAGCGCCAACGCAGAGGCGCCAGTGG
GACGCGAAGAAGGACAACAGGAGAGGATCGGCGTAGATGTGGTGGGAATG
GATGAAAAGAAAGACTTGAGGGATTTCGTGTTGTGGAAATTCAACAAGCC
AGGGGAGGCGGCCATGTCTTGGGATTCCCCTTGGGGTCGCGGACGGCCCG
GTTGGCACATCGAGTGCTCGGCGATGACGCAGCACCTATTGGGCCCCCAC
CTGGACATTCATTCCGGAGGCGTGGATCTCTGCTTCCCCCACCACACGAA
TGAGATCGCCCAGTCCGATGCCTTCAGGATGTCGGAGGACCCTGCCTGGG
TCGGCGCCTGGCTACACACAGGTCACCTTTACATCAAGGGCTTGAAGATG
TCCAAGTCTCTGAAGAACTTCATCAGCGTGAGGGAGTTCTTAGCGGGACA
CGACGCTGACGATTTTCGCATGTTTTGCTTACAGAGACGCTTCGATGCGG
ATGTCGACTACAGTGAGAGTGCCCTTCTTGAAGCCCGAAGCCTGAGGCAG
GTGTTCATCAACTTCGTCTCTTTGGCTCAGCAACGAGTCCACGTCCTCTC
CAGGGACGGATGTAAGCGTTGGGGCGCCAAGGAGTTCGAAATAATGGCAG
AGCTTGCTCGAGTCAAAGTGGGCGTAAGAAAGGCGTTTGTGCAAGGAGGT
TTGGACACGCCCCAGGTCCTGCGATTGTTGCGGGACCTTGTCGGTCTAGG
CCACGAGTACTTGCGGCAGGGAGACGGCAAGGCGGAAGAAAGGGACGGGA
CGGAAGCCCGCGGGGAGGTGGTGAGCAACCTGGCCGCATACGTGGCCAAG
CTGCTGGCACTCCTTGGCTTGCGGTGTTTTAACCAATTCACGCTCCTACA
CCGGGGTTCACTTTCTGGTGCGGACGTGGAAAGCCTGGCTAAATCTTTGG
TAGACTTCCGTGCTCGCGTCCGGGCAGCGGCCTTGGAGGGAAGACGACGC
CGTCCCCGGGATGGTAGTGACGTGGAGGAGAAAGAGGGGACAACGGCGGC
GCTCGCGCAAAGGCTTCTCGTTTTATGCGACGAGTTTCGGGAACGAGACC
TAATTGAATTGGGAATACAGGTCAAGGACACAGGCGTTGGAGAGTGTAGC
TGGACCCTTGCATCACCCTCATCTGCTCCTTGTGAAGCTGCGGACCAGAA
GCTCGACGTTCCTGGAGTAACGTTGCTTGCGTCGAGACGTCCCAAGTAAG
GATGACGCGTACGCGCTATCAAGGGCTCCTTGATTTACGGGAAAGGAACC
GAAGACAATTTTCGATCCCATGTGGCTCTGAGCGCCTGCACCGATGACTC
TCATAAGGCAAGACTTGTGTGGCATCCCTTGGGGCTCCTTAAGACTTTAG
GTATAGTTGTAAACACCGGCGGGGTCGTCTATATCGGTGAGATATGTGTA
TATCTGAGGGCACCATGGTATCCAAAAGGACCAGCTCTTGAAATTTTTTA
AAAGTGAATTGGAAGTTAACTCCGCACATGGGCAAATTGTTTC

protein sequence of rna7017

>rna7017-protein ID=rna7017-protein|Name=rna7017|organism=Nannochloropsis gaditana|type=polypeptide|length=645bp
MAGSTHSVGVRLAEGCVPSTAMMAQEPLSSEGKRARTGGNATQSASMPAS
SPMDVRAQHHIRQAPDHFEDAQSNQRPHGGQQQQLTSAGHGEAQGVSQEV
SPPTTRAVLLGPYADLFRFYLEHVDKYMPSARQDNVLKLEQWKQFISNQV
AALELSSSANTLLTSKQEEAIKKAILFVHRWHEQYQKAVQAKVVRMSAAN
AVQDVQASARQPTISTVFKTDLETELAMLEQGFSQCSYMNISEGAGVKTE
ELQERLLLGNAVAQRLSDDAAMAPRVHSRLSWDVLQAKVQTMVREGRETK
RLNVLRAIPDLVTAALKKRGLPSDPAATPVLSTPSKRPESLDGVLTRLRT
TYNAALACLAEHGGGQSGGGGEGPGGDGSKPVGVGFMKALELLKSVDVML
QELRRHQKMGVAADTGRSDPWQPGRGTARGPGEGDPQALDQFLNALQSRE
GGVSLNSPRLMIETLKPGEAWLEDLRSPATGIRAVTAVEEVLRASSHFKD
FAFSSSSHHNTISATFKKGQWEAEILLAERLTRAERDRSAGAATEGTLFP
LLVWVSAAGNRASSWSGRLEQEVRAALLRWRDWTQDDPVQTIAAVLEELR
LRVQHGARCDLTGRMLKVDGASFEPVPPYTLSGGTGSGLAYRMCL

mRNA from alignment at CM002470.1:250911..252951+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna7017 ID=rna7017|Name=rna7017|organism=Nannochloropsis gaditana|type=mRNA|length=2041bp|location=Sequence derived from alignment at CM002470.1:250911..252951+ (Nannochloropsis gaditana)
ATGGCTGGCAGTACACATAGTGTTGGCGTGCGTCTTGCAGAGGGGTGTGT
ACCTTCGACAGCCATGATGGCTCAGGAACCCCTCTCATCGGAAGGAAAAC
GggcgaggacaggaggaaacGCCACGCAGAGCGCAAGCATGCCAGCCTCG
TCGCCTATGGATGTCCGCGCGCAGCATCACATTCGTCAAGCACCCGATCA
TTTTGAAGATGCGCAGTCAAATCAGCGGCCTCACGGggggcaacagcaac
agctcACTTCGGCAGGGCATGGGGAAGCGCAGGGCGTCTCACAGGAGGTA
TCGCCTCCGACGACACGTGCAGTGTTGCTGGGTCCGTACGCCGACCTTTT
TCGATTCTATCTAGAGCACGTGGACAAGTATATGCCGAGTGCTCGTCAGG
ATAACGTGCTCAAGCTCGAGCAGGTGCGTGCGCATGGAGTGAAAATTAAT
ACAGAGACCAGGACGCGCAGACAGAAGtcagccctccccctcactcaAGT
ATGCACACCTACCCTCTCACACACAGTGGAAACAATTCATAAGCAATCAG
GTGGCCGCATTGGAATTATCCTCTTCCGCCAACACTCTACTGACGTCCAA
GCAGGAAGAAGCCATAAAGAAggccatcctcttcgtccaccgaTGGCACG
AGCAGTATCAGAAAGCAGTGCAGGCCAAGGTGGTTCGAATGTCCGCAGCA
AATGCGGTCCAGGACGTGCAAGCGTCGGCGCGGCAACCCACTATCTCCAC
CGTGTTCAAGACCGACCTAGAGACGGAGTTGGCGATGTTGGAGCAAGGTT
TTTCGCAATGTTCTTATATGAATATAtcagagggggcgggcgtcaAGACA
GAGGAGCTACAGGAAAGACTTTTACTAGGAAATGCAGTTGCGCAGCGACT
GTCGGATGACGCAGCCATGGCCCCAAGGGTGCATTCGCGGCTCTCATGGG
ATGTGTTGCAGGCAAAAGTACAGACCATGgtcagggaggggcgggagacc
AAGCGTCTGAACGTGCTCAGAGCCATTCCTGACCTTGTGACGGCTGCCTT
GAAGAAGCGGGGCCTGCCGTCGGACCCGGCCGCGACGCCAGTGCTGTCTA
CGCCTTCGAAGCGGCCTGAGAGCTTGGACGGGGTGTTGACGAGGTTGCGG
ACCACCTATAACGCGGCGCTGGCATGTCTGGCtgagcatggagggggaca
gtcagggggcggtggggaggggccggggggggacgggagcaAGCCTGTAG
GGGTGGGTTTCATGAAGGCACTAGAGTTGTTGAAAAGTGTAGACGTCATG
TTGCAAGAGCTTCGAAGGCATCAGAAGATGGGAGTAGCGGCGGACACAGG
ACGCTCGGATCCTTGGCAGCCCGGTCGAGGTACGGCCAGGGGCCCTGGGG
AGGGCGACCCGCAAGCTCTGGATCAATTTTTGAACGCGCTTCAGTCCCGA
GAGGGCGGTGTGTCCTTGAATTCGCCTCGATTAATGATTGAGACTCTGAA
GCCAGGAGAAGCTTGGTTGGAGGACCTACGCTCTCCGGCAACCGGCATTC
GTGCCGTAACGGCTGTTGAAGAAGTCCTTCGAGCTTCAAGTCATTTCAAA
GACTTCGCCTTCTCGAGCTCAAGCCACCATAACACGATTTCCGCCACTTT
CAAGAAAGGCCAATGGGAAGCCGAGATATTATTGGCAGAGAGATTGACTC
GAGCAGAGCGAGATCGCTCGGCAGGGGCGGCAACGGAGGGGACACTTTTC
CCGCTTCTTGTGTGGGTGAGTGCTGCTGGAAATCGAGCCTCGAGCTGGAG
TGGGAGATTGGAGCAAGAAGTTCGAGCGGCTTTGCTCCGGTGGCGAGACT
GGACACAGGATGACCCTGTCCAAACGATTGCAGCCGTCCTAGAAGAATTG
CGTTTGCGTGTTCAGCACGGTGCGCGTTGTGATCTCACTGGTAGGATGCT
TAAGGTAGACGGGGCTTCTTTCGAACCAGTGCCTCCTTACACGCTGTCAG
GAGGGACTGGGAGCGGTTTGGCCTATCGTATGTGCCTGTGA

Coding sequence (CDS) from alignment at CM002470.1:250911..252951+

>rna7017 ID=rna7017|Name=rna7017|organism=Nannochloropsis gaditana|type=CDS|length=3876bp|location=Sequence derived from alignment at CM002470.1:250911..252951+ (Nannochloropsis gaditana)
ATGGCTGGCAGTACACATAGTGTTGGCGTGCGTCTTGCAGAGGGGTGTGT
ACCTTCGACAGCCATGATGGCTCAGGAACCCCTCTCATCGGAAGGAAAAC
GggcgaggacaggaggaaacGCCACGCAGAGCGCAAGCATGCCAGCCTCG
TCGCCTATGGATGTCCGCGCGCAGCATCACATTCGTCAAGCACCCGATCA
TTTTGAAGATGCGCAGTCAAATCAGCGGCCTCACGGggggcaacagcaac
agctcACTTCGGCAGGGCATGGGGAAGCGCAGGGCGTCTCACAGGAGGTA
TCGCCTCCGACGACACGTGCAGTGTTGCTGGGTCCGTACGCCGACCTTTT
TCGATTCTATCTAGAGCACGTGGACAAGTATATGCCGAGTGCTCGTCAGG
ATAACGTGCTCAAGCTCGAGCAGTGGAAACAATTCATAAGCAATCAGGTG
GCCGCATTGGAATTATCCTCTTCCGCCAACACTCTACTGACGTCCAAGCA
GGAAGAAGCCATAAAGAAggccatcctcttcgtccaccgaTGGCACGAGC
AGTATCAGAAAGCAGTGCAGGCCAAGGTGGTTCGAATGTCCGCAGCAAAT
GCGGTCCAGGACGTGCAAGCGTCGGCGCGGCAACCCACTATCTCCACCGT
GTTCAAGACCGACCTAGAGACGGAGTTGGCGATGTTGGAGCAAGGTTTTT
CGCAATGTTCTTATATGAATATAtcagagggggcgggcgtcaAGACAGAG
GAGCTACAGGAAAGACTTTTACTAGGAAATGCAGTTGCGCAGCGACTGTC
GGATGACGCAGCCATGGCCCCAAGGGTGCATTCGCGGCTCTCATGGGATG
TGTTGCAGGCAAAAGTACAGACCATGgtcagggaggggcgggagaccAAG
CGTCTGAACGTGCTCAGAGCCATTCCTGACCTTGTGACGGCTGCCTTGAA
GAAGCGGGGCCTGCCGTCGGACCCGGCCGCGACGCCAGTGCTGTCTACGC
CTTCGAAGCGGCCTGAGAGCTTGGACGGGGTGTTGACGAGGTTGCGGACC
ACCTATAACGCGGCGCTGGCATGTCTGGCtgagcatggagggggacagtc
agggggcggtggggaggggccggggggggacgggagcaAGCCTGTAGGGG
TGGGTTTCATGAAGGCACTAGAGTTGTTGAAAAGTGTAGACGTCATGTTG
CAAGAGCTTCGAAGGCATCAGAAGATGGGAGTAGCGGCGGACACAGGACG
CTCGGATCCTTGGCAGCCCGGTCGAGGTACGGCCAGGGGCCCTGGGGAGG
GCGACCCGCAAGCTCTGGATCAATTTTTGAACGCGCTTCAGTCCCGAGAG
GGCGGTGTGTCCTTGAATTCGCCTCGATTAATGATTGAGACTCTGAAGCC
AGGAGAAGCTTGGTTGGAGGACCTACGCTCTCCGGCAACCGGCATTCGTG
CCGTAACGGCTGTTGAAGAAGTCCTTCGAGCTTCAAGTCATTTCAAAGAC
TTCGCCTTCTCGAGCTCAAGCCACCATAACACGATTTCCGCCACTTTCAA
GAAAGGCCAATGGGAAGCCGAGATATTATTGGCAGAGAGATTGACTCGAG
CAGAGCGAGATCGCTCGGCAGGGGCGGCAACGGAGGGGACACTTTTCCCG
CTTCTTGTGTGGGTGAGTGCTGCTGGAAATCGAGCCTCGAGCTGGAGTGG
GAGATTGGAGCAAGAAGTTCGAGCGGCTTTGCTCCGGTGGCGAGACTGGA
CACAGGATGACCCTGTCCAAACGATTGCAGCCGTCCTAGAAGAATTGCGT
TTGCGTGTTCAGCACGGTGCGCGTTGTGATCTCACTGGTAGGATGCTTAA
GGTAGACGGGGCTTCTTTCGAACCAGTGCCTCCTTACACGCTGTCAGGAG
GGACTGGGAGCGGTTTGGCCTATCGTATGTGCCTGTGAATGGCTGGCAGT
ACACATAGTGTTGGCGTGCGTCTTGCAGAGGGGTGTGTACCTTCGACAGC
CATGATGGCTCAGGAACCCCTCTCATCGGAAGGAAAACGggcgaggacag
gaggaaacGCCACGCAGAGCGCAAGCATGCCAGCCTCGTCGCCTATGGAT
GTCCGCGCGCAGCATCACATTCGTCAAGCACCCGATCATTTTGAAGATGC
GCAGTCAAATCAGCGGCCTCACGGggggcaacagcaacagctcACTTCGG
CAGGGCATGGGGAAGCGCAGGGCGTCTCACAGGAGGTATCGCCTCCGACG
ACACGTGCAGTGTTGCTGGGTCCGTACGCCGACCTTTTTCGATTCTATCT
AGAGCACGTGGACAAGTATATGCCGAGTGCTCGTCAGGATAACGTGCTCA
AGCTCGAGCAGTGGAAACAATTCATAAGCAATCAGGTGGCCGCATTGGAA
TTATCCTCTTCCGCCAACACTCTACTGACGTCCAAGCAGGAAGAAGCCAT
AAAGAAggccatcctcttcgtccaccgaTGGCACGAGCAGTATCAGAAAG
CAGTGCAGGCCAAGGTGGTTCGAATGTCCGCAGCAAATGCGGTCCAGGAC
GTGCAAGCGTCGGCGCGGCAACCCACTATCTCCACCGTGTTCAAGACCGA
CCTAGAGACGGAGTTGGCGATGTTGGAGCAAGGTTTTTCGCAATGTTCTT
ATATGAATATAtcagagggggcgggcgtcaAGACAGAGGAGCTACAGGAA
AGACTTTTACTAGGAAATGCAGTTGCGCAGCGACTGTCGGATGACGCAGC
CATGGCCCCAAGGGTGCATTCGCGGCTCTCATGGGATGTGTTGCAGGCAA
AAGTACAGACCATGgtcagggaggggcgggagaccAAGCGTCTGAACGTG
CTCAGAGCCATTCCTGACCTTGTGACGGCTGCCTTGAAGAAGCGGGGCCT
GCCGTCGGACCCGGCCGCGACGCCAGTGCTGTCTACGCCTTCGAAGCGGC
CTGAGAGCTTGGACGGGGTGTTGACGAGGTTGCGGACCACCTATAACGCG
GCGCTGGCATGTCTGGCtgagcatggagggggacagtcagggggcggtgg
ggaggggccggggggggacgggagcaAGCCTGTAGGGGTGGGTTTCATGA
AGGCACTAGAGTTGTTGAAAAGTGTAGACGTCATGTTGCAAGAGCTTCGA
AGGCATCAGAAGATGGGAGTAGCGGCGGACACAGGACGCTCGGATCCTTG
GCAGCCCGGTCGAGGTACGGCCAGGGGCCCTGGGGAGGGCGACCCGCAAG
CTCTGGATCAATTTTTGAACGCGCTTCAGTCCCGAGAGGGCGGTGTGTCC
TTGAATTCGCCTCGATTAATGATTGAGACTCTGAAGCCAGGAGAAGCTTG
GTTGGAGGACCTACGCTCTCCGGCAACCGGCATTCGTGCCGTAACGGCTG
TTGAAGAAGTCCTTCGAGCTTCAAGTCATTTCAAAGACTTCGCCTTCTCG
AGCTCAAGCCACCATAACACGATTTCCGCCACTTTCAAGAAAGGCCAATG
GGAAGCCGAGATATTATTGGCAGAGAGATTGACTCGAGCAGAGCGAGATC
GCTCGGCAGGGGCGGCAACGGAGGGGACACTTTTCCCGCTTCTTGTGTGG
GTGAGTGCTGCTGGAAATCGAGCCTCGAGCTGGAGTGGGAGATTGGAGCA
AGAAGTTCGAGCGGCTTTGCTCCGGTGGCGAGACTGGACACAGGATGACC
CTGTCCAAACGATTGCAGCCGTCCTAGAAGAATTGCGTTTGCGTGTTCAG
CACGGTGCGCGTTGTGATCTCACTGGTAGGATGCTTAAGGTAGACGGGGC
TTCTTTCGAACCAGTGCCTCCTTACACGCTGTCAGGAGGGACTGGGAGCG
GTTTGGCCTATCGTATGTGCCTGTGA

Synonyms

Publications