rna7015, rna7015 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna7015
Unique Name	rna7015
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1483
Alignment location	CM002470.1:245055..247282 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100030g37.4172.mrna
Orig protein id	gnl\|cribi\|Naga_100030g37.4172
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002470.1	supercontig	CM002470.1:245055..247282 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100030g37	gene6781	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna7015	rna7015-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM23675.1	cds6998	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002470.1:245055..247282+
coding sequence from alignment at CM002470.1:245055..247282+

mRNA sequence

>rna7015 ID=rna7015|Name=rna7015|organism=Nannochloropsis gaditana|type=mRNA|length=1483bp
AAATTCAGGACTCTGTGCAGGACTCAGGCCAATTCTTTAGCGCGTTTGTG
TGGGACTGGAATGGGAGTTCGGGTTCTCTGTTGCCGCTTTACCTCCCCAC
TACCCCCCTCCTGGTTGATATTTTTGGTGCTCTTTCTGAGCATAAAATCT
TACATAAGATCTGAAGCCTTTGTAAATACAAGCCCTTCGTTACAACCCAT
CTATCAAACCCAACCGCACTTGATGGCCGCGTCCTTTACGGCCTCCCCAC
AGACAAGCGGGCAAACGCTCCTCTCCTTTCTCTGTGAGGAGCAGGCAGCC
CACCCCATCTCAATTGATGGCGATTTGCATTTAGTATTGTTAGCCGTCAG
CTCAGCAGTAAAAGCTATAAGTCATGCGGTGCGGCGAGCAGGACTGGATA
ATTTGACGGGTTTTCACGCGAAGAAGCAAGGCGGAGAGGCCACCACAAAT
CAGGGGGGGGAAAGGCAAAAGAAATTGGACGTCTTGGCGAACGACATTCT
AAAGGAGGCACTACACGGGTGTGGTCAAGTGGCGGGATTTGCTTCAGAGG
AAGAAGATGGCATAATTTCTTTGCGGACTGGGGCTAAGTATCTGGTTGTG
GTGGACCCTTTGGACGGCTCTTCCAACGTGGACGCTAGTATTCCCACTGG
CACCATCTTCGGGGTGTATCGGAGCCTAGGGGATACGCCAGCGCAGCTTC
AGGCGGGGGTTTTGCAAGCTGGGAAAGAGCAAGTAGCTGCGGGGTACTGT
TTGTTTTCAGCAGCCACCCTCCTAGTCATGAGTATGGGCCGCGGGACCGG
CACCCATGTCTTCACGCTCGACCCGCACATCGGGGACTTCATTCTCACTC
ATCGCCGCATTCGAATGCCAGAGCGCGGTTCGACATATTCTTTGAATGAG
GCCAGGCACCAGGATTGGCCACAAACACTCCAGCGCTACGTGACAAACAT
GAAGCTCGGCCAGAATCGAACCCGCAAGCCGTACGCCTTGGTGTACGTGT
GCTCTTTGGTCGCGGACGCGCACTGGCTTCTATTCCGAGGTGGGATGGCC
TGCAATCCTCGCAGTCACTTACGGCTGTGCTACGAGGGAAACCCCATGGG
ATTGATAATAGAAGAAGCCGGGGGCCTAGCAAGTTGCGGGGATGGCGGTC
GCATTTTAGAAATGTCGCCATCAGCCGTCCATCAACGCACCCCCATTTTC
CTGGGTAGCCTTGACGATATCTTGGAATTAGAGTCCTATGGGGACGTGAC
ACAAAATTATAATCCAGGCTACAGTGCTCTTTAAAGACCAAATAACAGCG
CAAAGGAGAAGGGGGAAATGTGTCTCGTTCGTTTCCATATTTACCATCTT
AATTGCGATAACGGCTAGGTGTAAATAATAAAGTGCTATAATTTCATGCT
GCTCGGTTTGTATTTCAAATTCATTTGTTCCAGAGAGAAGCAAGAGCACA
TTGGTTGAAAATGTTTTTCAGAGTGTATTTGTG

protein sequence of rna7015

>rna7015-protein ID=rna7015-protein|Name=rna7015|organism=Nannochloropsis gaditana|type=polypeptide|length=461bp
MGRAEASAVVLTIMTCLSGTSASISAPAFVMQPFTCHSRESLQLFRVRTR
GAVPCFPQPAKSVMQAASGSGENSGSGNKDDLYYQRFMGMNEGEPTDDVR
VAAEIADMDPSIIDSLRRGTPMDDKVKVSSSSGSPTASFFLGASGSGGGS
SSVGSGGFLESMKKKAPSFSTRGAGSAGGAGGGMSGSPLRGTPDMMSTGP
KVYIIPQNQEEAPLEIRSVAPGQRRNQKGVIAEIPGRSFPKRPRRVDLSE
KMAEVKRSIQEAPTRLTEVQVQNLRNGAAINPNNPAGSGNPGVGAQGSPN
QQGGNNMKNAGANSGQSQFSFPSFPVQPMPQQKSQQPFSSLAGAGTGRSR
GSKRRGSLSGEFDAQGGMGRRNRNRGSPASQLQLPAWSRDWRVWVGGIAA
VSFFMALVNSLSYRSELVVMDGSGLRGNRDWGHTLASTTLTPEHESSQTA
TVDDVLDNLFA

mRNA from alignment at CM002470.1:245055..247282+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna7015 ID=rna7015|Name=rna7015|organism=Nannochloropsis gaditana|type=mRNA|length=2228bp|location=Sequence derived from alignment at CM002470.1:245055..247282+ (Nannochloropsis gaditana)
CGGTCTGGCCTAGTCCTCTCGCCGCCTCGTTTTCTGCTGACTCATGCCAC
GCTCCTCATCGGATGTACGACCCGTGACAGCTTCATCCCACACCCGTGTT
TGTCGCTTCGAAGTAGGAATAAAGTCGTGTCGGTGAATGCGGAAGCGCTT
TGTTGCTCTATTTTCCCCCATATCTTTCTGACTGCTAAGGCGCTCGATCT
TTGTGATGTCGACGCGGCGAAAGCGTGGCAATTAGAATCTCCAACACATT
TTGTACTTATAAGTCACAGTGCACAGGAGTTCAGCTTCGACCCTCAGAGG
CACGAGCAGGCCGATCTGATACCTTTTGCCGCCATCTGGCTGTTTTTGCG
CCGACGGCAGTAAGCCATGGGACGGGCTGAAGCATCAGCCGTCGTTTTAA
CCATTATGACGTGCCTTAGTGGCACAAGCGCCAGCATCAGTGCACCAGCC
TTTGTAATGCAGCCATTCACTTGTCACTCAAGAGAGAGTTTGCAATTATT
TCGTGTTCGGACTCGCGGTGCGGTGCCTTGTTTTCCTCAACCTGCGAAGT
CAGTTATGCAGGCCGCCAGCGGAAGCGGAGAGAACTCCGGGAGCGGCAAC
AAAGACGACCTGTACTACCAACGCTTTATGGGTATGAATGAAGGCGAACC
CACGGACGATGTGCGCGTCGCGGCGGAAATTGCGGACATGGATCCAAGCA
TCATCGACTCGTTGCGCCGCGGCACACCCATGGACGACAAGGTGAAAGTC
TCATCCTCATCGGGATCGCCTACTGCTTCGTTTTTTCTGGGAGCCAGTGG
CAGTGGCGGTGGGAGTAGTAGCGTTGGGAGCGGCGGATTTCTGGAGTcaa
tgaagaaaaaggcgccGAGCTTCTCAACCCGAGGCGCAGGGAGtgcgggc
ggggcaggaggggggatgagCGGCAGCCCTCTGAGAGGGACCCCGGACAT
GATGAGCACTGGTCCAAAGGTGTACATCATCCCCCAAAATCAGGAAGAGG
CGCCACTGGAAATCAGAAGCGTGGCTCCGGGACAAAGAAGAAACCAGAAA
GGCGTTATAGCAGAGATCCCGGGTCGGAGTTTTCCGAAACGGCCTCGGCG
AGTGGACCTTTCCGAGAAGGTGGGTAAGTGGGATGGGAGGGCATGGTGAC
GGGGGGTAATCGAAAAAGGAATGGTGTCAGGGTTATGTGCGGAGGTACTT
GAGTACGTGTCGGGCGGGTGTCAAATTTCATGCCTGTGGTGTTCTACACA
ACGCTTCGCAGATGGCTGAGGTGAAGCGCTCCATCCAAGAAGCACCCACG
CGTCTCACGGAAGTGCAAGTTCAAAATCTTCGCAACGGGGCAGCAATAAA
TCCTAACAATCCTGCCGGCAGTGGCAATCCCGGGGTGGGTGCTCAAGGGA
GCCCAAACCAGCAGGGCGGCAACAACATGAAGAACGCCGGCGCGAACTCC
GGTCAAAGTCAATTTTCGTTTCCCAGCTTTCCGGTCCAGCCCATGCCTCA
GCAAAAGTCGCAACAACCCTTTTCGTCTTTGGCCGGCGCCGGGACCGGGA
GATCCCGCGGTTCCAAGCGGCGTGGTTCCCTCTCAGGGGAGTTCGACGCG
CAAGGCGGAATGGGCCGTCGCAACCGAAACCGCGGGTCTCCGGCCTCTCA
GCTCCAACTTCCTGCCTGGAGCCGTGATTGGAGAGTCTGGGTGGGCGGCA
TCGCAGccgtctcctttttcatggCCTTGGTGAACTCGCTGAGCTACAGA
AGCGAACTGGTGGTCATGGACGGGAGCGGCCTGCGCGGAAATAGGGATTG
GGGCCACACGCTTGCGAGCACAACGCTCACACCGGAGCATGAGTCCAGTC
AGACGGCTACAGTTGACGACGTTTTGGACAATCTCTTTGCATGAAGAATA
CTTATGTATGGCGGCGACAGTGTAGCTATTTGATGAGCGATTTTACTCGT
TGACAGTagtgagggatggaagatGCGGAAGTGGGATCGGGGTGGAACCT
GGGGAGTGGTTCGCATTGTACAATTTGAGGACAGAAAGGGCTATAAAAAG
ATAAGGGTATGTTTGGACGCTGAGATAGGGGCAGACAGAGACTCACGTAC
GGATGGACCCATAAATGTGCATGCACGGCCCATTTCTTTGAGCTTTCGGC
AGGATGACTGATAAGAAGGAAACAATTTGCCCATGTGCGGAGTTAACTTC
CAATTCACTTTTAAAAAATTTCAAGAGC

Coding sequence (CDS) from alignment at CM002470.1:245055..247282+

>rna7015 ID=rna7015|Name=rna7015|organism=Nannochloropsis gaditana|type=CDS|length=2772bp|location=Sequence derived from alignment at CM002470.1:245055..247282+ (Nannochloropsis gaditana)
ATGGGACGGGCTGAAGCATCAGCCGTCGTTTTAACCATTATGACGTGCCT
TAGTGGCACAAGCGCCAGCATCAGTGCACCAGCCTTTGTAATGCAGCCAT
TCACTTGTCACTCAAGAGAGAGTTTGCAATTATTTCGTGTTCGGACTCGC
GGTGCGGTGCCTTGTTTTCCTCAACCTGCGAAGTCAGTTATGCAGGCCGC
CAGCGGAAGCGGAGAGAACTCCGGGAGCGGCAACAAAGACGACCTGTACT
ACCAACGCTTTATGGGTATGAATGAAGGCGAACCCACGGACGATGTGCGC
GTCGCGGCGGAAATTGCGGACATGGATCCAAGCATCATCGACTCGTTGCG
CCGCGGCACACCCATGGACGACAAGGTGAAAGTCTCATCCTCATCGGGAT
CGCCTACTGCTTCGTTTTTTCTGGGAGCCAGTGGCAGTGGCGGTGGGAGT
AGTAGCGTTGGGAGCGGCGGATTTCTGGAGTcaatgaagaaaaaggcgcc
GAGCTTCTCAACCCGAGGCGCAGGGAGtgcgggcggggcaggagggggga
tgagCGGCAGCCCTCTGAGAGGGACCCCGGACATGATGAGCACTGGTCCA
AAGGTGTACATCATCCCCCAAAATCAGGAAGAGGCGCCACTGGAAATCAG
AAGCGTGGCTCCGGGACAAAGAAGAAACCAGAAAGGCGTTATAGCAGAGA
TCCCGGGTCGGAGTTTTCCGAAACGGCCTCGGCGAGTGGACCTTTCCGAG
AAGATGGCTGAGGTGAAGCGCTCCATCCAAGAAGCACCCACGCGTCTCAC
GGAAGTGCAAGTTCAAAATCTTCGCAACGGGGCAGCAATAAATCCTAACA
ATCCTGCCGGCAGTGGCAATCCCGGGGTGGGTGCTCAAGGGAGCCCAAAC
CAGCAGGGCGGCAACAACATGAAGAACGCCGGCGCGAACTCCGGTCAAAG
TCAATTTTCGTTTCCCAGCTTTCCGGTCCAGCCCATGCCTCAGCAAAAGT
CGCAACAACCCTTTTCGTCTTTGGCCGGCGCCGGGACCGGGAGATCCCGC
GGTTCCAAGCGGCGTGGTTCCCTCTCAGGGGAGTTCGACGCGCAAGGCGG
AATGGGCCGTCGCAACCGAAACCGCGGGTCTCCGGCCTCTCAGCTCCAAC
TTCCTGCCTGGAGCCGTGATTGGAGAGTCTGGGTGGGCGGCATCGCAGcc
gtctcctttttcatggCCTTGGTGAACTCGCTGAGCTACAGAAGCGAACT
GGTGGTCATGGACGGGAGCGGCCTGCGCGGAAATAGGGATTGGGGCCACA
CGCTTGCGAGCACAACGCTCACACCGGAGCATGAGTCCAGTCAGACGGCT
ACAGTTGACGACGTTTTGGACAATCTCTTTGCATGAATGGGACGGGCTGA
AGCATCAGCCGTCGTTTTAACCATTATGACGTGCCTTAGTGGCACAAGCG
CCAGCATCAGTGCACCAGCCTTTGTAATGCAGCCATTCACTTGTCACTCA
AGAGAGAGTTTGCAATTATTTCGTGTTCGGACTCGCGGTGCGGTGCCTTG
TTTTCCTCAACCTGCGAAGTCAGTTATGCAGGCCGCCAGCGGAAGCGGAG
AGAACTCCGGGAGCGGCAACAAAGACGACCTGTACTACCAACGCTTTATG
GGTATGAATGAAGGCGAACCCACGGACGATGTGCGCGTCGCGGCGGAAAT
TGCGGACATGGATCCAAGCATCATCGACTCGTTGCGCCGCGGCACACCCA
TGGACGACAAGGTGAAAGTCTCATCCTCATCGGGATCGCCTACTGCTTCG
TTTTTTCTGGGAGCCAGTGGCAGTGGCGGTGGGAGTAGTAGCGTTGGGAG
CGGCGGATTTCTGGAGTcaatgaagaaaaaggcgccGAGCTTCTCAACCC
GAGGCGCAGGGAGtgcgggcggggcaggaggggggatgagCGGCAGCCCT
CTGAGAGGGACCCCGGACATGATGAGCACTGGTCCAAAGGTGTACATCAT
CCCCCAAAATCAGGAAGAGGCGCCACTGGAAATCAGAAGCGTGGCTCCGG
GACAAAGAAGAAACCAGAAAGGCGTTATAGCAGAGATCCCGGGTCGGAGT
TTTCCGAAACGGCCTCGGCGAGTGGACCTTTCCGAGAAGATGGCTGAGGT
GAAGCGCTCCATCCAAGAAGCACCCACGCGTCTCACGGAAGTGCAAGTTC
AAAATCTTCGCAACGGGGCAGCAATAAATCCTAACAATCCTGCCGGCAGT
GGCAATCCCGGGGTGGGTGCTCAAGGGAGCCCAAACCAGCAGGGCGGCAA
CAACATGAAGAACGCCGGCGCGAACTCCGGTCAAAGTCAATTTTCGTTTC
CCAGCTTTCCGGTCCAGCCCATGCCTCAGCAAAAGTCGCAACAACCCTTT
TCGTCTTTGGCCGGCGCCGGGACCGGGAGATCCCGCGGTTCCAAGCGGCG
TGGTTCCCTCTCAGGGGAGTTCGACGCGCAAGGCGGAATGGGCCGTCGCA
ACCGAAACCGCGGGTCTCCGGCCTCTCAGCTCCAACTTCCTGCCTGGAGC
CGTGATTGGAGAGTCTGGGTGGGCGGCATCGCAGccgtctcctttttcat
ggCCTTGGTGAACTCGCTGAGCTACAGAAGCGAACTGGTGGTCATGGACG
GGAGCGGCCTGCGCGGAAATAGGGATTGGGGCCACACGCTTGCGAGCACA
ACGCTCACACCGGAGCATGAGTCCAGTCAGACGGCTACAGTTGACGACGT
TTTGGACAATCTCTTTGCATGA

Synonyms

Publications