rna7014, rna7014 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna7014
Unique Name	rna7014
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2033
Alignment location	CM002470.1:243383..244950 -

Link to JBrowse

Properties


Property Name	Value
Product	fructose-bisphosphatase-like protein
Orig transcript id	gnl\|cribi\|Naga_100030g36.4192.mrna
Orig protein id	gnl\|cribi\|Naga_100030g36.4192
Gene	FBP
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002470.1	supercontig	CM002470.1:243383..244950 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
FBP	gene6780	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna7014	rna7014-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM23695.1	cds6997	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002470.1:243383..244950-
coding sequence from alignment at CM002470.1:243383..244950-

mRNA sequence

>rna7014 ID=rna7014|Name=rna7014|organism=Nannochloropsis gaditana|type=mRNA|length=2033bp
AGGAGGATCGGATCGCTCCGCACAGCTTGCACTCCTTGGGGCCTCTTTTC
CCACAAAAGCATCACAACACGTCCTAGCAAATCCCGAACCAAGTAATCAC
ATATGTACATAGAAAATTTCGTGTTTTATTTTAATTGTGATATCAATGAA
ATTCACAATGTATGGGGGAAAGATGATGGGACACAATGTAAAGGTGGATT
TGGCCCCTCATCTCGTTTGTGCGCGCGACATTTAACATCGTGTTTTGCAT
TAAAAGCAGGATACAGGATACAAGACCTATCAGGCTGAACTTTAAACAGA
GCGACAAGCGTGAATGGTTTCTCCTGCTTCGAATGGAGGAAGTGGAGGTG
ACCTTCCTCCTTCACTCCCGAGACCCACCTCGGCCGGCAACTTGAGACGA
GGAGTTTCTTCCAATCCAGCTGTTCTCCCCCATCAACAAACGAGCCAACA
ACAGCAACAAGCGCAATCCATGACTGCTCCTCATTATCAAGTTTTAAGCC
CCACCACTGATCTTTCGCAAGGAATGGAGCAAGCAACTATATGCTCTCGG
GGAAACATACTTCAGCAAAATTCCATGCCTCCAGGCGCCTTGTCCGTTCC
CCATTCGAAAAGCTTGCGCCACAATGACGACGATGATCAAGATACTCAAC
AAGTAAAAAGTAACATGTATCAGCATGGACAAATTAATTCATTGCCGCAA
GCCTTTGAGAAAAAGCTTCGACGGCTGGAGAAAAACCGTGAGTCAGCACG
CGAGTGTCGCAGGCGGAAGAAGGAGCATGTCGTGGAGCTGCAGAAGCAGG
TGGCGCACCTAGAAGCTGAGAATCTGAAACTCAAGTTACAGCTGAAGGTG
GGAGAAGAGTCTCAAGCACAAGAGAGGCAAGAGAAAGCCCGCATTACGAA
GAAGCTGGATGAAATGGTTAAAACGGGTGCGAGCGAATCAGACATCTGGC
AAACCATTGACATGTTCAAGGAGAGATATTCGGATTACGGCAGCGACCGT
CGCTCCGCGATCGAATTTCATACGAATCAACTCGAGAAGCTCCTACTTCC
TACCAAGCTCACCAAGGTGTGCATGTGGATGCTTCTCAACATGAAAGGGA
CCGACATTGTCGGTGGATTAAATATGACCGAGTCAAAAGGCCTGGTGGGC
TCTCTGTGCAACGTAGAAGACTCTGCTTCTGAACCGGCGCGACAGTTGTG
GGCTGTCTTATCGGAGGAGCTGCACGTAACGAGGGAGCAGCAAGCCGCTC
TTCTTCAGCGCCGAGATAATATCGTGGCTATGGACGCAGATATAGGAGTC
ACATCAGCCATGCTTCGAGAGCTGCGGGCTTTGATCGAGGACAAGAACTC
CAGCTTAGACCAGGAGCTGCTGGAGGTCCAGAAGATCCTGTCCCCTACCC
AGACGGCGAAGTTCATTCTCTGGATAACGCGCAACCCGGCCTGTATGCAC
ATGCTCAACCAGCTCTGGCGCGCTGTTTACGAGCGTTCTGGAGGCGGAGA
AGGAACGGGAGATAGAAGTGGGACGCGGGAAGGCAGCGGGGAGGCGGATG
GGCATCTGACTGTCGGGCAACAAGCCCCCCCGGCAAACCTGGAGGAGCCC
TACCAAAACGATAGGGCCGTATCGACATGAGAGGTGCAATACGGTCAAAC
TACAGGAGATTACTTTCCTAACCATGCCCTAGAAAGACAGCGGCCTGAAA
GCAGCTTGTAGCCGCCCTTCTACGAGGGGTTTCAGAGTCTGAGGGACTCC
ACAGCACTGTACAATTTCATCCACCCAACTCCTCTCCTGCATGCGCGACG
AAAGACGTACTTTGTCTCGACCTTCACACAGTACAGCACCTGCTTCCCTT
CACTCTTGCCAAACTCTCTCTTTGTCAATGGGCCCATCACAGACGGCTCA
CGGTGCGAAGAGCATGGTCTGCGCGACGAATAAAGCTTTGGCCGTCCCCT
CATTCTGGTCCTGAAAGAATCCTGAAGGCACGGTTTGCTTCACTCCATTC
CTATGAAAATTAATGAAACTATAGCAGCAGACG

protein sequence of rna7014

>rna7014-protein ID=rna7014-protein|Name=rna7014|organism=Nannochloropsis gaditana|type=polypeptide|length=407bp
MGVRVLCCRFTSPLPPSWLIFLVLFLSIKSYIRSEAFVNTSPSLQPIYQT
QPHLMAASFTASPQTSGQTLLSFLCEEQAAHPISIDGDLHLVLLAVSSAV
KAISHAVRRAGLDNLTGFHAKKQGGEATTNQGGERQKKLDVLANDILKEA
LHGCGQVAGFASEEEDGIISLRTGAKYLVVVDPLDGSSNVDASIPTGTIF
GVYRSLGDTPAQLQAGVLQAGKEQVAAGYCLFSAATLLVMSMGRGTGTHV
FTLDPHIGDFILTHRRIRMPERGSTYSLNEARHQDWPQTLQRYVTNMKLG
QNRTRKPYALVYVCSLVADAHWLLFRGGMACNPRSHLRLCYEGNPMGLII
EEAGGLASCGDGGRILEMSPSAVHQRTPIFLGSLDDILELESYGDVTQNY
NPGYSAL

mRNA from alignment at CM002470.1:243383..244950-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna7014 ID=rna7014|Name=rna7014|organism=Nannochloropsis gaditana|type=mRNA|length=1568bp|location=Sequence derived from alignment at CM002470.1:243383..244950- (Nannochloropsis gaditana)
AAATTCAGGACTCTGTGCAGGACTCAGGCCAATTCTTTAGCGCGTTTGTG
TGGGACTGGAATGGGAGTTCGGGTTCTCTGTTGCCGCTTTACCTCCCCAC
TACCCCCCTCCTGGTTGATATTTTTGGTGCTCTTTCTGAGCATAAAATCT
TACATAAGATCTGAAGCCTTTGTAAATACAAGCCCTTCGTTACAACCCAT
CTATCAAACCCAACCGCACTTGATGGCCGCGTCCTTTACGGCCTCCCCAC
AGACAAGCGGGCAAACGCTCCTCTCCTTTCTCTGTGAGGAGCAGGCAGCC
CACCCCATCTCAATTGATGGCGATTTGCATTTAGTATTGTTAGCCGTCAG
CTCAGCAGTAAAAGCTATAAGTCATGCGGTGCGGCGAGCAGGACTGGATA
ATTTGACGGGTTTTCACGCGAAGAAGCAAGGCGGAGAGGCCACCACAAAT
CAGGGGGGGGAAAGGCAAAAGAAATTGGACGTCTTGGCGAACGACATTCT
AAAGGAGGCACTACACGGGTGTGGTCAAGTGGCGGGATTTGCTTCAGAGG
AAGAAGATGGCATAATTTCTTTGCGGACTGGGGCTAAGTATCTGGTTGTG
GTGGACCCTTTGGACGGCTCTTCCAACGTGGACGCTAGTATTCCCACTGG
CACCATCTTCGGGGTGTATCGGAGCCTAGGGGATACGCCAGCGCAGCTTC
AGGCGGGGGTTTTGCAAGCTGGGAAAGAGCAAGTAGCTGCGGGGTACTGT
TTGTTTTCAGCAGCCACCCTCCTAGTCATGAGTATGGGCCGCGGGACCGG
CACCCATGTCTTCACGCTCGACCCGCACATCGGGGACTTCATTCTCACTC
ATCGCCGCATTCGAATGCCAGAGCGCGGTTCGACATATTCTTTGAATGAG
GCCAGGCACCAGGATTGGCCACAAACACTCCAGCGCTACGTGACAAACAT
GAAGCTCGGCCAGAATCGAACCCGCAAGCCGTACGCCTTGGTGTACGTGT
GCTCTTTGGTCGCGGACGCGCACTGGCTTCTATTCCGAGGTGGGATGGCC
TGCAATCCTCGCAGTCACTTACGGCTGTGCTACGAGGGAAACCCCATGGG
ATTGGTGCGTTATTTCTCCCGTGCAAGGTAATTTGAGTTTCTATTTCATT
TAACCCATCCCTTGTACTCCCACCGCTCATATCGCGCAGATAATAGAAGA
AGCCGGGGGCCTAGCAAGTTGCGGGGATGGCGGTCGCATTTTAGAAATGT
CGCCATCAGCCGTCCATCAACGCACCCCCATTTTCCTGGGTAGCCTTGAC
GATATCTTGGAATTAGAGTCCTATGGGGACGTGACACAAAATTATAATCC
AGGCTACAGTGCTCTTTAAAGACCAAATAACAGCGCAAAGGAGAAGGGGG
AAATGTGTCTCGTTCGTTTCCATATTTACCATCTTAATTGCGATAACGGC
TAGGTGTAAATAATAAAGTGCTATAATTTCATGCTGCTCGGTTTGTATTT
CAAATTCATTTGTTCCAGAGAGAAGCAAGAGCACATTGGTTGAAAATGTT
TTTCAGAGTGTATTTGTG

Coding sequence (CDS) from alignment at CM002470.1:243383..244950-

>rna7014 ID=rna7014|Name=rna7014|organism=Nannochloropsis gaditana|type=CDS|length=2448bp|location=Sequence derived from alignment at CM002470.1:243383..244950- (Nannochloropsis gaditana)
ATAATAGAAGAAGCCGGGGGCCTAGCAAGTTGCGGGGATGGCGGTCGCAT
TTTAGAAATGTCGCCATCAGCCGTCCATCAACGCACCCCCATTTTCCTGG
GTAGCCTTGACGATATCTTGGAATTAGAGTCCTATGGGGACGTGACACAA
AATTATAATCCAGGCTACAGTGCTCTTTAAATGGGAGTTCGGGTTCTCTG
TTGCCGCTTTACCTCCCCACTACCCCCCTCCTGGTTGATATTTTTGGTGC
TCTTTCTGAGCATAAAATCTTACATAAGATCTGAAGCCTTTGTAAATACA
AGCCCTTCGTTACAACCCATCTATCAAACCCAACCGCACTTGATGGCCGC
GTCCTTTACGGCCTCCCCACAGACAAGCGGGCAAACGCTCCTCTCCTTTC
TCTGTGAGGAGCAGGCAGCCCACCCCATCTCAATTGATGGCGATTTGCAT
TTAGTATTGTTAGCCGTCAGCTCAGCAGTAAAAGCTATAAGTCATGCGGT
GCGGCGAGCAGGACTGGATAATTTGACGGGTTTTCACGCGAAGAAGCAAG
GCGGAGAGGCCACCACAAATCAGGGGGGGGAAAGGCAAAAGAAATTGGAC
GTCTTGGCGAACGACATTCTAAAGGAGGCACTACACGGGTGTGGTCAAGT
GGCGGGATTTGCTTCAGAGGAAGAAGATGGCATAATTTCTTTGCGGACTG
GGGCTAAGTATCTGGTTGTGGTGGACCCTTTGGACGGCTCTTCCAACGTG
GACGCTAGTATTCCCACTGGCACCATCTTCGGGGTGTATCGGAGCCTAGG
GGATACGCCAGCGCAGCTTCAGGCGGGGGTTTTGCAAGCTGGGAAAGAGC
AAGTAGCTGCGGGGTACTGTTTGTTTTCAGCAGCCACCCTCCTAGTCATG
AGTATGGGCCGCGGGACCGGCACCCATGTCTTCACGCTCGACCCGCACAT
CGGGGACTTCATTCTCACTCATCGCCGCATTCGAATGCCAGAGCGCGGTT
CGACATATTCTTTGAATGAGGCCAGGCACCAGGATTGGCCACAAACACTC
CAGCGCTACGTGACAAACATGAAGCTCGGCCAGAATCGAACCCGCAAGCC
GTACGCCTTGGTGTACGTGTGCTCTTTGGTCGCGGACGCGCACTGGCTTC
TATTCCGAGGTGGGATGGCCTGCAATCCTCGCAGTCACTTACGGCTGTGC
TACGAGGGAAACCCCATGGGATTGATAATAGAAGAAGCCGGGGGCCTAGC
AAGTTGCGGGGATGGCGGTCGCATTTTAGAAATGTCGCCATCAGCCGTCC
ATCAACGCACCCCCATTTTCCTGGGTAGCCTTGACGATATCTTGGAATTA
GAGTCCTATGGGGACGTGACACAAAATTATAATCCAGGCTACAGTGCTCT
TTAAATGGGAGTTCGGGTTCTCTGTTGCCGCTTTACCTCCCCACTACCCC
CCTCCTGGTTGATATTTTTGGTGCTCTTTCTGAGCATAAAATCTTACATA
AGATCTGAAGCCTTTGTAAATACAAGCCCTTCGTTACAACCCATCTATCA
AACCCAACCGCACTTGATGGCCGCGTCCTTTACGGCCTCCCCACAGACAA
GCGGGCAAACGCTCCTCTCCTTTCTCTGTGAGGAGCAGGCAGCCCACCCC
ATCTCAATTGATGGCGATTTGCATTTAGTATTGTTAGCCGTCAGCTCAGC
AGTAAAAGCTATAAGTCATGCGGTGCGGCGAGCAGGACTGGATAATTTGA
CGGGTTTTCACGCGAAGAAGCAAGGCGGAGAGGCCACCACAAATCAGGGG
GGGGAAAGGCAAAAGAAATTGGACGTCTTGGCGAACGACATTCTAAAGGA
GGCACTACACGGGTGTGGTCAAGTGGCGGGATTTGCTTCAGAGGAAGAAG
ATGGCATAATTTCTTTGCGGACTGGGGCTAAGTATCTGGTTGTGGTGGAC
CCTTTGGACGGCTCTTCCAACGTGGACGCTAGTATTCCCACTGGCACCAT
CTTCGGGGTGTATCGGAGCCTAGGGGATACGCCAGCGCAGCTTCAGGCGG
GGGTTTTGCAAGCTGGGAAAGAGCAAGTAGCTGCGGGGTACTGTTTGTTT
TCAGCAGCCACCCTCCTAGTCATGAGTATGGGCCGCGGGACCGGCACCCA
TGTCTTCACGCTCGACCCGCACATCGGGGACTTCATTCTCACTCATCGCC
GCATTCGAATGCCAGAGCGCGGTTCGACATATTCTTTGAATGAGGCCAGG
CACCAGGATTGGCCACAAACACTCCAGCGCTACGTGACAAACATGAAGCT
CGGCCAGAATCGAACCCGCAAGCCGTACGCCTTGGTGTACGTGTGCTCTT
TGGTCGCGGACGCGCACTGGCTTCTATTCCGAGGTGGGATGGCCTGCAAT
CCTCGCAGTCACTTACGGCTGTGCTACGAGGGAAACCCCATGGGATTG

Synonyms

Publications