rna7010, rna7010 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna7010
Unique Name	rna7010
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2161
Alignment location	CM002470.1:230625..232274 +

Link to JBrowse

Properties


Property Name	Value
Product	acid phosphatase-like 2
Orig transcript id	gnl\|cribi\|Naga_100030g31.4165.mrna
Orig protein id	gnl\|cribi\|Naga_100030g31.4165
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002470.1	supercontig	CM002470.1:230625..232274 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100030g31	gene6776	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna7010	rna7010-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM23668.1	cds6993	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002470.1:230625..232274+
coding sequence from alignment at CM002470.1:230625..232274+

mRNA sequence

>rna7010 ID=rna7010|Name=rna7010|organism=Nannochloropsis gaditana|type=mRNA|length=2161bp
GCGACAATAGATGAGCGCGGCCGCCATCACTTCCTCCACTCTCCGCCTCG
AGGCGTCGGTGAGATATTTTTGCTCGTATAGACGCCAGTACACGGCGATG
CAGCATCCCCTGTATTTCAATGAGGTTTTTGCGAAGTTCTGAATTCCAAG
GATCACTAGCCGGATTGTCTTTTACAGAGGACGATTGCGCAGGGAGGCCT
CATGGGCCGGTCGGTCGGGTTGCGGATGTGAGGCCCGGGCACTTTCACCT
CCCGGGGAGCTCATGCATCCACGCCGATCCCACCCACCCGCTCACATCAA
GGCTTTTCCACTCACAGGCCGCCCAGTAGATCAGACGCCTTAATGAGAGC
AAGGGAGGGGCGTTGGCTTGAGAGAAACGGATCACCTGGACACTCAGTAC
TGGGACGACTGGTGTCGCTCAAGCTGGCATGTGTTTTCCTCATGATTCAT
GTCCTGATAGCTCATCTACGTACCGCAGCACAAACGCATCCTGAGTATGC
GCATACAAATCTATACGAAGCACTGGGACTAAATCCGAATGCCACGCCCG
CAGATGTTAAGAAGGCATATCGGACACTGGCCCTTAAAAACCATCCTGAT
AAAGTCCAGGTGGATGACAAAGAAGCTGCTGCTAGCGTGTTCGCAGAAAT
CGCAGAAGCGTATGAAATCCTATCTGATCCAGTTCGACGCCAGCAATACG
ATTTAGCACGGAGGCAGGTGGAAGAAGCGAGTAATTTGGGGAAGCAAGGC
CGCGACCATCACCATTCCGATCGTGGATTCGGCTATGAAGACTATTGGGA
CGAGGACGTGGAGGCATGGAGCGCGCAAGGTCGGAGAGATGCTTACTTCG
CTCACCAGGATCATGGAAGAGATGAAAAATGGATCTTCACAGATCCGTTT
CAACTGTTTGAAAGTTTTTTTGCCGACACCCGGGAATGGGGCGATCTGCG
ATGGGGCTGGGACCACGAGGCAGCAGGCTACGCTGGCTACCCATCTGGCA
ATGTGGTCAGCGATTGGGAAAGCGATGTGTACGAGGACATAGAATGGCAC
TCTTTCGGTGGGCAGGACTTTATACGCATAGAAAGGGTATACGGAGACGG
CCGGATTGAAATGGAAACGAAAGAGGCGCCCTCTTCGTCGTCTGGGCGAG
CACGTGTTGACCTGGGAGGGCGCAAGAAGACGGGGGAGTGGGCCCACGAA
GAAAGGGGAGGGCACAAAGGAGACTCGTTTGAGCGTTTTCATCGACCATT
CTCAAGCTCGTGGGGTACAAGCACCATGGGTGTTGCTAGGCAAGCATTGC
GGACGGGAGAAAGGCTGAAGGTGGGGGATCAACTCTTGTCCCCCGAGGGA
ACTCATGTGTGCTTTCTAGACCACAAATACGAAAAATTGGTTGTTGCAGA
GAATTTGGAGGATGGGGACATCCTATGGGAGTCAAACGGAAGGGGAGAAG
GATGGGAAACGTGGGAAGAGGGGGACAGCCTCAAAGAGGGCGCAAGGCCG
CACTCTCTCCACGAAAGCCATCTGTCAGCAGTCGTGTCGCGACAAGGTCG
GGTGGAGATATGGAGGGAGGAGCGAGTGGGGTCGATAGGCGGTAGGAAGG
AGCTGGTTTGGCAATCCACTAAAGATGCGGGCGGTCCAAGCGTCGACGAG
GACCTGAGCAGCCTCGAGTACGTTCTCACCCTTTCGGATGTGGACGGAAA
CCTGGCGTTGTACTGCGTCGCGAAGGAAGGGAGGGCTTTGGGAGACGAAG
GTGGGGATGAGGAATGTGTGTGGGCTAGCCGGGGTTGTCCTGGGATGGGG
CGTACTGCTCGCCAGGCGCTGGAGGAGTTTGGCCGTCAGGTCGTCTTCCC
CGTCTTCCGGCTGGGTGTAGCGGGGCTCACTTCCCTTTTAAAGCAGCTGC
GGGCCTTCGTGAGGGATCATGGATTTCCCAATTTGAGAAGGGGGTGGATG
TATGTATATAGGCTGACGAAAAAGGCAGCAAGCAAGCTCAGGCACGCTGT
TGCGGAGAGGAGGCGGGTGGAGAGAAAGAAGCAGAGCCAGGGGAGAGGTA
GCGGGAGCAGCATATAAATTAAATCCACACCGGTGTGTGGTATGCATGTC
AGTGTATATGAGAAGAAATATCAAAGCACACCGGAAGACTGAGGTGTGTG
GCATTGCATTG

protein sequence of rna7010

>rna7010-protein ID=rna7010-protein|Name=rna7010|organism=Nannochloropsis gaditana|type=polypeptide|length=549bp
MLHRRVLASIRAKISHRRLEAESGGSDGGRAHLLSRGMAVIFTASSLLFV
ACLLLPAKLPHGNLTLKLKGGKHEFSYCEAPMDGEDGILPPGTRTRKLKQ
IQVVIRHGDRSPITSLTSPSPEFDCKLKDPTMRRVAQLVRERFSVAGVQG
KASLEYLTHALLAPTRDPPGKGQDLAALQGDETRAGPETAFSGDESQACF
PGQLTERGLQQQLRNGQYLRDRYGTALGIKDMDKEIYFRSTNYPRTFISG
AVLMLSFLAPIVPEHMPVVVQEENNKEALFGRGLIGASRPRNIDPFQSAP
EEKGSCRAAFALGAQQEKAFKVAADLDRELFDQLKLSPAVEAEARNLSVA
DATDPLMGMACHSQELPVKRSLVHLLKQETDRMFCERFAGAEGGREGTRL
GMQPFLREVLGRFQSYQDTRLKLALYSAHDTVLSPLLGALDVLDRHCYWP
PYASRIVFELWGPPIAKGNSLKADTKAGHLLGSKESEENAVRILYNGNTV
SRRSLHCPEYRGKYEGGQGMEEEMLLPLGCLQEYVERMSPRGGSQVPCT

mRNA from alignment at CM002470.1:230625..232274+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna7010 ID=rna7010|Name=rna7010|organism=Nannochloropsis gaditana|type=mRNA|length=1650bp|location=Sequence derived from alignment at CM002470.1:230625..232274+ (Nannochloropsis gaditana)
ATGCTGCATCGCCGTGTACTGGCGTCTATACGAGCAAAAATATCTCACCG
ACGCCTCGAGGCGGagagtggaggaagtgatggCGGCCGCGCTCATCTAT
TGTCGCGTGGAATGGCAGTGATATTTACCGCAAGCAGTCTCCTCTTTGTC
GCGTGCCTCCTGCTGCCGGCAAAATTGCCGCATGGTAATTTAACCTTGAA
GCTCAAAGGCGGCAAACATGAATTCTCCTACTGCGAAGCCCCCatggatg
gggaggatggaatTCTTCCACCAGGCACGCGCACTAGGAAGCTTAAACAA
ATTCAGGTTGTGATTCGGCACGGAGATCGTTCGCCGATCACGAGTCtgac
ctcgccttccccaGAATTCGATTGTAAATTGAAGGACCCAACCATGCGTC
GAGTGGCGCAGCTGGTACGGGAGAGGTTTAGCGTGGCGGGAGTCCAGGGC
AAAGCCTCTTTAGAGTACCTCACGCATGCCTTGCTTGCGCCGACCAGGGA
TCCGCCAGGGAAGGGACAGGATTTAGCTGCACTGCAAGGAGATGAGACCA
GAGCAGGACCTGAAACGGCTTTCTCGGGCGATGAAAGTCAAGCCTGCTTT
CCGGGCCAATTGACTGAGCGAGGCCTTCAGCAGCAGCTTCGGAATGGACA
GTACCTGCGAGATAGATATGGTACCGCCCTAGGCATCAAGGACATGGATA
AAGAGATCTACTTTCGCAGCACCAATTACCCGCGGACGTTTATTTCCGGG
GCAGTGCTGATGCTGAGCTTTCTGGCCCCGATAGTGCCCGAGCACATGCC
GGTGGTTGttcaggaggaaaacaacAAGGAGGCACTTTTTGGACGAGGTT
TGATCGGCGCATCTCGACCCAGGAACATTGATCCCTTTCAGAGTGCAcct
gaggaaaaaggatcTTGTCGAGCTGCGTTTGCATTAGGGGCACAGCAGGA
GAAAGCCTTCAAAGTTGCGGCAGATTTAGACCGTGAATTGTTCGACCAGC
TTAAGCTGAGTCCAGCAGTAGAGGCAGAAGCGCGGAACTTGAGCGTGGCC
GACGCTACAGATCCTCTTATGGGCATGGCTTGCCACAGCCAAGAACTGCC
TGTTAAAAGGAGCCTCGTGCATCTCTTGAAGCAAGAGACTGACCGCATGT
TCTGTGAGCGTTTTGCCGgagccgagggcgggcgggagggcacCCGTTTG
GGTATGCAGCCTTTCCTTCGTGAAGTCCTTGGTCGCTTTCAGTCATATCA
AGACACGCGCTTGAAGCTGGCGCTTTATTCAGCGCATGACACAGTTTTGT
CCCCACTCCTGGGTGCCTTGGATGTGCTTGATAGGCACTGCTATTGGCCA
CCCTACGCGAGTCGGATCGTCTTTGAGCTTTGGGGGCCTCCCATCGCCAA
AGGAAACTCACTGAAGGCTGATACAAAGGCGGGTCACCTCCTTGGATcaa
aagagagcgaggaaaaTGCCGTCCGTATCCTCTACAACGGCAACACCGTT
TCGCGACGGAGTTTGCATTGCCCAGAATACAGAGGTAAATatgagggagg
acagggaatggaggaggagatgctgTTGCCCCTCGGTTGTTTGCAGGAGT
ACGTGGAGCGCATGTCAcctagaggaggaagccaagTTCCGTGTACATAA

Coding sequence (CDS) from alignment at CM002470.1:230625..232274+

>rna7010 ID=rna7010|Name=rna7010|organism=Nannochloropsis gaditana|type=CDS|length=1650bp|location=Sequence derived from alignment at CM002470.1:230625..232274+ (Nannochloropsis gaditana)
ATGCTGCATCGCCGTGTACTGGCGTCTATACGAGCAAAAATATCTCACCG
ACGCCTCGAGGCGGagagtggaggaagtgatggCGGCCGCGCTCATCTAT
TGTCGCGTGGAATGGCAGTGATATTTACCGCAAGCAGTCTCCTCTTTGTC
GCGTGCCTCCTGCTGCCGGCAAAATTGCCGCATGGTAATTTAACCTTGAA
GCTCAAAGGCGGCAAACATGAATTCTCCTACTGCGAAGCCCCCatggatg
gggaggatggaatTCTTCCACCAGGCACGCGCACTAGGAAGCTTAAACAA
ATTCAGGTTGTGATTCGGCACGGAGATCGTTCGCCGATCACGAGTCtgac
ctcgccttccccaGAATTCGATTGTAAATTGAAGGACCCAACCATGCGTC
GAGTGGCGCAGCTGGTACGGGAGAGGTTTAGCGTGGCGGGAGTCCAGGGC
AAAGCCTCTTTAGAGTACCTCACGCATGCCTTGCTTGCGCCGACCAGGGA
TCCGCCAGGGAAGGGACAGGATTTAGCTGCACTGCAAGGAGATGAGACCA
GAGCAGGACCTGAAACGGCTTTCTCGGGCGATGAAAGTCAAGCCTGCTTT
CCGGGCCAATTGACTGAGCGAGGCCTTCAGCAGCAGCTTCGGAATGGACA
GTACCTGCGAGATAGATATGGTACCGCCCTAGGCATCAAGGACATGGATA
AAGAGATCTACTTTCGCAGCACCAATTACCCGCGGACGTTTATTTCCGGG
GCAGTGCTGATGCTGAGCTTTCTGGCCCCGATAGTGCCCGAGCACATGCC
GGTGGTTGttcaggaggaaaacaacAAGGAGGCACTTTTTGGACGAGGTT
TGATCGGCGCATCTCGACCCAGGAACATTGATCCCTTTCAGAGTGCAcct
gaggaaaaaggatcTTGTCGAGCTGCGTTTGCATTAGGGGCACAGCAGGA
GAAAGCCTTCAAAGTTGCGGCAGATTTAGACCGTGAATTGTTCGACCAGC
TTAAGCTGAGTCCAGCAGTAGAGGCAGAAGCGCGGAACTTGAGCGTGGCC
GACGCTACAGATCCTCTTATGGGCATGGCTTGCCACAGCCAAGAACTGCC
TGTTAAAAGGAGCCTCGTGCATCTCTTGAAGCAAGAGACTGACCGCATGT
TCTGTGAGCGTTTTGCCGgagccgagggcgggcgggagggcacCCGTTTG
GGTATGCAGCCTTTCCTTCGTGAAGTCCTTGGTCGCTTTCAGTCATATCA
AGACACGCGCTTGAAGCTGGCGCTTTATTCAGCGCATGACACAGTTTTGT
CCCCACTCCTGGGTGCCTTGGATGTGCTTGATAGGCACTGCTATTGGCCA
CCCTACGCGAGTCGGATCGTCTTTGAGCTTTGGGGGCCTCCCATCGCCAA
AGGAAACTCACTGAAGGCTGATACAAAGGCGGGTCACCTCCTTGGATcaa
aagagagcgaggaaaaTGCCGTCCGTATCCTCTACAACGGCAACACCGTT
TCGCGACGGAGTTTGCATTGCCCAGAATACAGAGGTAAATatgagggagg
acagggaatggaggaggagatgctgTTGCCCCTCGGTTGTTTGCAGGAGT
ACGTGGAGCGCATGTCAcctagaggaggaagccaagTTCCGTGTACATAA

Synonyms

Publications