rna7006, rna7006 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna7006
Unique Name	rna7006
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1539
Alignment location	CM002470.1:224301..225259 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100030g27.4171.mrna
Orig protein id	gnl\|cribi\|Naga_100030g27.4171
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002470.1	supercontig	CM002470.1:224301..225259 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100030g27	gene6772	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna7006	rna7006-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM23674.1	cds6989	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002470.1:224301..225259+
coding sequence from alignment at CM002470.1:224301..225259+

mRNA sequence

>rna7006 ID=rna7006|Name=rna7006|organism=Nannochloropsis gaditana|type=mRNA|length=1539bp
ATGAGTGAAGACGTCATACCAGTCGTTCTGTACTCAATCTCGGCAGCTGC
TTTGCTTTACGTCATCCGGACCCGGAGACATGAGATATTGGTGCGCAAGT
CTAGCCTTGACCTGAAAGGAAGCGCCGATTCGTCTCCGTCACGGGTTCGG
GGAGTCTCTGCCGATCATATCGTAGCCTTGGAGAAGTCTGACAAGGGTGC
GCTCATTGAGCATCCTCGTCGACAAGCTCTCAAGACGGACTTTGTCGGCT
TTAGCACTATGCAACGGAAGCTTATACTGGTGATGGTAGGCCTCCCAGCA
CGTGGCAAGAGCTACATCGTGAAGATGCTCATACGCTACCTGACATGGAC
GGGAATTTCAGCGAAAGTTTTTAATGTCGGGGACTTTCGTCGAAAATTGG
GTTTAAGCGGAGTTGATAAGTCCTTTTTCGAGGCGAATAACGCAGAGGCT
CAGAAAACCCGGGAGAGTATGGCAGCACAAGTCCTGGACGAGGCATACGA
GTGGCTGTCGGCGGGCGGCGAGGACGAGCCGCGGGTGGCACTCTTCGATG
CTACTAATACGACGCGGGCGCGACGGGCTACGTTATTGACGCGAAATCGG
CAAGAGACAAACGCCACCCTGCTATTTGTTGAAAGCATCTGCGACGATGA
GGAAATTCTTCATCGCAACTATAGTATGAAGCTCCAAAACAACGACTACA
AAGGCATGGACCCCGCAGTAGCCCTTGCGGACTTCATGCAGCGAGTCAAG
GCCTACGAAGCGGTCTACGAGGAGCTGGGGGACGACGAGGATGACGGAAA
CATTTCGTATATCAAGGTCTACAATGTTGGTCGCAAGGTGGTTACGCGCA
ATACGACGGGCTACATTCCCTCTCAGATTGCATTTTATTTGCAAAATATC
CATATCGAGCCCCGTAAGATATGGTTAACGCGTCACGCTGAGTCGCTGGA
CCAGGTCAACAACATTCTGGGACGGGACTCTGGGGACTTGACAGACGCTG
GCCGCCAGTACTGCTTGATGCTCACGCGCTTTATCAAGGCGCAGCAGGAG
AAAGTCATGGGCACGGGCCACGAGGTCCTCATTCTTGCGGGGACACAGCA
AGTGCACCATGCTACCATTGAGCACCTGCAACTTATTTACCCGTGTGTCT
CAACACCGCTTTTGAACGAGCTACGCGGAGGAGACCTGGACGGTATTGAC
AGAACACAGCTCAAGGCGCTCTTTCCTGAAGTGTGGGAGGGAAGGATGCA
TGACAAGCTCAATTATAGGTATCCAGGAGCGGGGGGCGAGTCTTACGCGG
ACGTGATCCAACGGATTAGGCCTATTATTGTGGAGCTGGAGCGTCAACGT
AGGTCTGTGCTTGTAGTAAGTCACTTAGCCGTGCAGCGTTGCCTTTATGG
CTACTTTATGGGCACTGCCATGTCAGAAATTCCCTATCTTGACCTGCCAA
AACATGTTGTTATCGAGCTCACACCTGGTCCATTTGGAACAACTGAGAAG
GCCATACCTTTGTTTGAGCGCGGGGATTTGACTGAATAG

protein sequence of rna7006

>rna7006-protein ID=rna7006-protein|Name=rna7006|organism=Nannochloropsis gaditana|type=polypeptide|length=110bp
MDATSLQYATVWAVPAVLASLTLLIALDIALKGVHTLTLRTRSLPGHIFL
AHIDNLIERLFGGKQLSFSITSVMLGAVLIAIMSCSIILHKLVVMKAEEM
EELREEKRRR

mRNA from alignment at CM002470.1:224301..225259+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna7006 ID=rna7006|Name=rna7006|organism=Nannochloropsis gaditana|type=mRNA|length=959bp|location=Sequence derived from alignment at CM002470.1:224301..225259+ (Nannochloropsis gaditana)
AGGCTACACACGCCAGCTCTTCATGGGCCATCATCTTTGTTTCTATTTCC
CAATTCATAGTGTTCGAACAGGAGTGTGTGCACCGTACAGGATCTGGATC
CGAAATTTTGTTCGCTTGGTTTGCACGTGGCCGGACTCTTGTGTTGAACC
TCCTTGCCAACCTTAGAATTTCCCTTTGTCGCACGTTCCCTACACCTGGC
TTCCTATCCAACCGACGAACGCATCGTGGAGACACGCGCACAATGTTCTT
TAACTCCTGTCATGCTTTCTTACTCCACTATCACATCTGTCAATAGGTTT
GGTTCTGCTTCCACACATCTCGTTCCCTCTGAACCAGTCAAACCGAATCA
CTCATGGATGCCACCAGTCTCCAATACGCAACAGTATGGGCTGTGCCTGC
CGTCCTAGCAAGTTTGACGCTATTGATCGCACTGGATATTGCCCTTAAGG
GTGTGCACACGTTAACGCTTCGCACCCGCTCCTTGCCAGGCCATATCTTC
CTGGCTCACATTGACAACCTCATCGAGAGGCTTTTCGGCGGCAAGCAACT
CTCGTTTTCCATCACAAGTGTGATGCTCGGCGCCGTGTTAATTGCCATCA
TGTCATGCAGTATCATTTTACATAAATTGGTCGTTATGAAGgcggaagag
atggaagaatTGCGTGAAGAGAAGCGCCGCCGTTAGAAATGTGACAAGTG
GCTTGGCATCCGTCTTCCTTTGAGGCAATGCACAAAAAATAGGTAGGACC
TCTGATTTTTTTGCAAGAAAAGGGTAAAAGGGGTAATAAGGTGCAATGCT
AAATAATTGACTTCAAGTGGTGCGGGCAAAAAGGAAAGTTTGCTAGGGGC
ACGAGAGTGAGAAGAATATTTTCCCTAAACTTGCGCCTCGATAAATCACG
TAACGTTCGATGGGGCAAGGAAAATCACCGCCGAAGTGTAAACTATGAGG
TGTCTGCTT

Coding sequence (CDS) from alignment at CM002470.1:224301..225259+

>rna7006 ID=rna7006|Name=rna7006|organism=Nannochloropsis gaditana|type=CDS|length=333bp|location=Sequence derived from alignment at CM002470.1:224301..225259+ (Nannochloropsis gaditana)
ATGGATGCCACCAGTCTCCAATACGCAACAGTATGGGCTGTGCCTGCCGT
CCTAGCAAGTTTGACGCTATTGATCGCACTGGATATTGCCCTTAAGGGTG
TGCACACGTTAACGCTTCGCACCCGCTCCTTGCCAGGCCATATCTTCCTG
GCTCACATTGACAACCTCATCGAGAGGCTTTTCGGCGGCAAGCAACTCTC
GTTTTCCATCACAAGTGTGATGCTCGGCGCCGTGTTAATTGCCATCATGT
CATGCAGTATCATTTTACATAAATTGGTCGTTATGAAGgcggaagagatg
gaagaatTGCGTGAAGAGAAGCGCCGCCGTTAG

Synonyms

Publications