rna7003, rna7003 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna7003
Unique Name	rna7003
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Alignment location	CM002470.1:215322..217713 +

Link to JBrowse

Properties


Property Name	Value
Product	rna binding domain protein
Orig transcript id	gnl\|cribi\|Naga_100030g24.4194.mrna
Orig protein id	gnl\|cribi\|Naga_100030g24.4194
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002470.1	supercontig	CM002470.1:215322..217713 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100030g24	gene6769	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna7003	rna7003-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM23697.1	cds6986	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at CM002470.1:215322..217713+
coding sequence from alignment at CM002470.1:215322..217713+

protein sequence of rna7003

>rna7003-protein ID=rna7003-protein|Name=rna7003|organism=Nannochloropsis gaditana|type=polypeptide|length=585bp
MAATGDGVSERVWNYLAPSGDKKGPFPESTLIRMLVKKLPGLDTSSFCWT
PGMEEWRPIGQMTNFSSVLEAESAAWYYLDKNGQQQGPTDVKNVADLLHD
GEVDGLSLVWHQDLAGGWRPLSEVDELRQLLRLFMPSELGEEQSDKVQNI
EPGSGAKAGGGADLNITMDERQVFQAEEMPGMSMAVTSTNKKTDDGGVKQ
SYVADDGTKYRLNIDTNEWEEVESDDESEDEMEKVNQEGNDEPSQQNCAA
SSTEYGTLERRKRKKKNRGGEGWDRASNKWVYITGLPSDATAEELEAHFK
QVGILAIDPETQRPRIKMYRDPSGAPKGDASVAFVRPESVELAVEILNEG
MLRPGWPLNITKAVFHQKASTAGEKSKTEPVKKRRLNEAKAKVARAAAKQ
ALSWSEADDSGLGGKALRIVVVKNMFEPSDCESAEFIEDLRKDLEIECTA
LGPLEKMTIFERHPEGVIVIKFGTAFAAEQCVKLMNGRFFAGRKLQSFYW
DGSTDYTKANYKDRQTTTRTSWDHGKVTFISSEGNDRAYEGREPTEFTLA
EDGEDTEEEKRLADFGAELDNQDLPEEFQLEVASE

mRNA from alignment at CM002470.1:215322..217713+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna7003 ID=rna7003|Name=rna7003|organism=Nannochloropsis gaditana|type=mRNA|length=2392bp|location=Sequence derived from alignment at CM002470.1:215322..217713+ (Nannochloropsis gaditana)
CTACACGGCGCTGCTAGCGCAACCATCCACAAGATCTCCGTCACTTCCAG
TCGATCAGGAGTATATGACTGTCTCGGAGCTACTTTGATCGGCGATGTCG
TCAAATACAACAGTAACAACAGCAACAGGGTCTACAGTTTGACGATCGTA
ACATGATAGAGATGTCGCAGCTCAGCCAGAAATATCGGGATGTCATGGAC
TATCAAATGGTTTCTTATCCTGGCTGGCTCTCTCAAAATGTGTTTTATCC
TGGTTGTGCGCTGTCTCGAGTAAGACTCACCGCTTCGATTCTTTCTCGGA
CAAAGCCATCCAATTGCAGCATTACTACCTATATTTTTGCATCTTTACAT
CTAACAACAGTATACACCATACTTTCTACATGACAGGGATAGGAACATGG
CTGCAACTGGTGATGGCGTAAGTGAGCGCGTGTGGAACTATCTCGCACCG
TCGGGGGACAAGAAGGTGCGTACAAGTTGTTCGGATTGCTTTGAATGTAT
TTTCTCATTCAGTAGCAAAGACAAAATGAGttaaaaaaaatggaaaCCGA
TGGTATGAATGTGGTGCCCTGACGCTTGACTGAGACTAGGAGCTGCAATT
ATTGCCACACACAGCGCCCAGTCAGGGATTTAAGGTGTTAACTCTTCCTC
TGTTGTTTATCTTGAACCGACAGGGACCTTTCCCAGAGTCCACTTTGATA
CGAATGCTGGTGAAAAAGTTGCCGGGTCTGGACACTTCATCTTTTTGCTG
GACTCCGGGCATGGAGGAGTGGCGGCCAATCGGGCAGATGACGAATTTTA
GTTCCGTGTTGGAGGCCGAAAGCGCTGCTTGGTATTATTTGGACAAAAAT
GGACAGCAGCAAGGTCCTACAGATGTAAAAAATGTGGCAGACTTACTTCA
TGATGGAGAAGTCGATGGGTTGAGCTTAGTTTGGCATCAGGATCTAgccg
ggggatggaggccatTGTCTGAAGTGGACGAATTACGACAGTTGCTTCGC
CTTTTTATGCCATCAGAACTTGGAGAAGAACAAAGCGACAAGGTTCAAAA
TATCGAGCCAGGGAGTGGCGCAAaggcaggcggtggagccGACTTAAACA
TCACAATGGATGAGCGACAAGTTTTTCAAGCTGAGGAGATGCCAGGCATG
TCCATGGCAGTTACATCGACCAATAAAAAGACAGATGATGGCGGAGTAAA
GCAATCATATGTTGCGGATGACGGCACAAAGTACCGTCTGAATATCGATA
CCAACGAATGGGAAGAAGTCGAATCGGATGATGAAAGCGAGGATGAAATG
GAGAAAGTCAATCAGGAAGGAAATGATGAACCTAGTCAGCAAAATTGCGC
GGCTTCCTCGACGGAATATGGGACAttggagagaagaaagagaaagaaga
aaaatcgagggggagaaggatgggaTAGAGCATCAAATAAATGGGTGTAT
ATAACAGGCCTTCCTTCGGACGCGACagcggaggagctggaggctcATTT
CAAGCAAGTTGGCATCCTAGCGATAGACCCAGAAACACAACGCCCACGGA
TCAAAATGTATCGTGATCCGTCAGGTGCTCCCAAAGGGGACGCTTCTGTC
GCATTCGTACGCCCAGAATCGGTAGAACTAGCCGTAGAAATTCTGAATGA
AGGAATGCTCCGTCCGGGTTGGCCCTTAAACATTACCAAGGCTGTTTTTC
ATCAAAAAGCAAGTACAGCGGGTGAAAAGAGCAAGACAGAGCCCGTTAAA
AAGCGTAGATTAAACGAGGCAAAAGCCAAGGTTGCGCGAGCGGCGGCTAA
GCAGGCCTTGTCTTGGTCGGAGGCCGATGATTCCGGACTTGGAGGCAAGG
CGTTACGTATCGTGGTAGTCAAAAACATGTTTGAACCCTCCGATTGTGAA
TCGGCAGAATTTATTGAAGATTTACGAAAAGATTTGGAAATTGAATGCAC
TGCCTTAGGTCCATTAGAAAAAATGACAATATTTGAGAGGCACCCAGAAG
GTGTTATCGTGATCAAATTTGGGACGGCATTTGCTGCAGAGCAATGTGTC
AAGCTGATGAATGGACGCTTTTTTGCGGGGCGAAAGCTTCAATCTTTTTA
CTGGGATGGTAGCACTGACTACACGAAGGCAAACTACAAAGATAGACAAA
CCACAACTCGTACTTCTTGGGATCATGGAAAAGTCACTTTTATAAGTTCA
GAGGGCAATGATCGTGCCTATGAAGGAAGAGAACCCACAGAATTTACACT
GGCTGAGGATGGCGAAGATACCGAAGAAGAGAAACGCCTAGCAGACTTCG
GGGCTGAGCTAGACAATCAAGATTTACCAGAAGAGTTCCAACTCGAGGTT
GCTTCTGAATGAGATGTCAATGGTATGGCTACCAAtcttttg

Coding sequence (CDS) from alignment at CM002470.1:215322..217713+

>rna7003 ID=rna7003|Name=rna7003|organism=Nannochloropsis gaditana|type=CDS|length=3516bp|location=Sequence derived from alignment at CM002470.1:215322..217713+ (Nannochloropsis gaditana)
ATGGCTGCAACTGGTGATGGCGTAAGTGAGCGCGTGTGGAACTATCTCGC
ACCGTCGGGGGACAAGAAGGGACCTTTCCCAGAGTCCACTTTGATACGAA
TGCTGGTGAAAAAGTTGCCGGGTCTGGACACTTCATCTTTTTGCTGGACT
CCGGGCATGGAGGAGTGGCGGCCAATCGGGCAGATGACGAATTTTAGTTC
CGTGTTGGAGGCCGAAAGCGCTGCTTGGTATTATTTGGACAAAAATGGAC
AGCAGCAAGGTCCTACAGATGTAAAAAATGTGGCAGACTTACTTCATGAT
GGAGAAGTCGATGGGTTGAGCTTAGTTTGGCATCAGGATCTAgccggggg
atggaggccatTGTCTGAAGTGGACGAATTACGACAGTTGCTTCGCCTTT
TTATGCCATCAGAACTTGGAGAAGAACAAAGCGACAAGGTTCAAAATATC
GAGCCAGGGAGTGGCGCAAaggcaggcggtggagccGACTTAAACATCAC
AATGGATGAGCGACAAGTTTTTCAAGCTGAGGAGATGCCAGGCATGTCCA
TGGCAGTTACATCGACCAATAAAAAGACAGATGATGGCGGAGTAAAGCAA
TCATATGTTGCGGATGACGGCACAAAGTACCGTCTGAATATCGATACCAA
CGAATGGGAAGAAGTCGAATCGGATGATGAAAGCGAGGATGAAATGGAGA
AAGTCAATCAGGAAGGAAATGATGAACCTAGTCAGCAAAATTGCGCGGCT
TCCTCGACGGAATATGGGACAttggagagaagaaagagaaagaagaaaaa
tcgagggggagaaggatgggaTAGAGCATCAAATAAATGGGTGTATATAA
CAGGCCTTCCTTCGGACGCGACagcggaggagctggaggctcATTTCAAG
CAAGTTGGCATCCTAGCGATAGACCCAGAAACACAACGCCCACGGATCAA
AATGTATCGTGATCCGTCAGGTGCTCCCAAAGGGGACGCTTCTGTCGCAT
TCGTACGCCCAGAATCGGTAGAACTAGCCGTAGAAATTCTGAATGAAGGA
ATGCTCCGTCCGGGTTGGCCCTTAAACATTACCAAGGCTGTTTTTCATCA
AAAAGCAAGTACAGCGGGTGAAAAGAGCAAGACAGAGCCCGTTAAAAAGC
GTAGATTAAACGAGGCAAAAGCCAAGGTTGCGCGAGCGGCGGCTAAGCAG
GCCTTGTCTTGGTCGGAGGCCGATGATTCCGGACTTGGAGGCAAGGCGTT
ACGTATCGTGGTAGTCAAAAACATGTTTGAACCCTCCGATTGTGAATCGG
CAGAATTTATTGAAGATTTACGAAAAGATTTGGAAATTGAATGCACTGCC
TTAGGTCCATTAGAAAAAATGACAATATTTGAGAGGCACCCAGAAGGTGT
TATCGTGATCAAATTTGGGACGGCATTTGCTGCAGAGCAATGTGTCAAGC
TGATGAATGGACGCTTTTTTGCGGGGCGAAAGCTTCAATCTTTTTACTGG
GATGGTAGCACTGACTACACGAAGGCAAACTACAAAGATAGACAAACCAC
AACTCGTACTTCTTGGGATCATGGAAAAGTCACTTTTATAAGTTCAGAGG
GCAATGATCGTGCCTATGAAGGAAGAGAACCCACAGAATTTACACTGGCT
GAGGATGGCGAAGATACCGAAGAAGAGAAACGCCTAGCAGACTTCGGGGC
TGAGCTAGACAATCAAGATTTACCAGAAGAGTTCCAACTCGAGGTTGCTT
CTGAATGAATGGCTGCAACTGGTGATGGCGTAAGTGAGCGCGTGTGGAAC
TATCTCGCACCGTCGGGGGACAAGAAGGGACCTTTCCCAGAGTCCACTTT
GATACGAATGCTGGTGAAAAAGTTGCCGGGTCTGGACACTTCATCTTTTT
GCTGGACTCCGGGCATGGAGGAGTGGCGGCCAATCGGGCAGATGACGAAT
TTTAGTTCCGTGTTGGAGGCCGAAAGCGCTGCTTGGTATTATTTGGACAA
AAATGGACAGCAGCAAGGTCCTACAGATGTAAAAAATGTGGCAGACTTAC
TTCATGATGGAGAAGTCGATGGGTTGAGCTTAGTTTGGCATCAGGATCTA
gccgggggatggaggccatTGTCTGAAGTGGACGAATTACGACAGTTGCT
TCGCCTTTTTATGCCATCAGAACTTGGAGAAGAACAAAGCGACAAGGTTC
AAAATATCGAGCCAGGGAGTGGCGCAAaggcaggcggtggagccGACTTA
AACATCACAATGGATGAGCGACAAGTTTTTCAAGCTGAGGAGATGCCAGG
CATGTCCATGGCAGTTACATCGACCAATAAAAAGACAGATGATGGCGGAG
TAAAGCAATCATATGTTGCGGATGACGGCACAAAGTACCGTCTGAATATC
GATACCAACGAATGGGAAGAAGTCGAATCGGATGATGAAAGCGAGGATGA
AATGGAGAAAGTCAATCAGGAAGGAAATGATGAACCTAGTCAGCAAAATT
GCGCGGCTTCCTCGACGGAATATGGGACAttggagagaagaaagagaaag
aagaaaaatcgagggggagaaggatgggaTAGAGCATCAAATAAATGGGT
GTATATAACAGGCCTTCCTTCGGACGCGACagcggaggagctggaggctc
ATTTCAAGCAAGTTGGCATCCTAGCGATAGACCCAGAAACACAACGCCCA
CGGATCAAAATGTATCGTGATCCGTCAGGTGCTCCCAAAGGGGACGCTTC
TGTCGCATTCGTACGCCCAGAATCGGTAGAACTAGCCGTAGAAATTCTGA
ATGAAGGAATGCTCCGTCCGGGTTGGCCCTTAAACATTACCAAGGCTGTT
TTTCATCAAAAAGCAAGTACAGCGGGTGAAAAGAGCAAGACAGAGCCCGT
TAAAAAGCGTAGATTAAACGAGGCAAAAGCCAAGGTTGCGCGAGCGGCGG
CTAAGCAGGCCTTGTCTTGGTCGGAGGCCGATGATTCCGGACTTGGAGGC
AAGGCGTTACGTATCGTGGTAGTCAAAAACATGTTTGAACCCTCCGATTG
TGAATCGGCAGAATTTATTGAAGATTTACGAAAAGATTTGGAAATTGAAT
GCACTGCCTTAGGTCCATTAGAAAAAATGACAATATTTGAGAGGCACCCA
GAAGGTGTTATCGTGATCAAATTTGGGACGGCATTTGCTGCAGAGCAATG
TGTCAAGCTGATGAATGGACGCTTTTTTGCGGGGCGAAAGCTTCAATCTT
TTTACTGGGATGGTAGCACTGACTACACGAAGGCAAACTACAAAGATAGA
CAAACCACAACTCGTACTTCTTGGGATCATGGAAAAGTCACTTTTATAAG
TTCAGAGGGCAATGATCGTGCCTATGAAGGAAGAGAACCCACAGAATTTA
CACTGGCTGAGGATGGCGAAGATACCGAAGAAGAGAAACGCCTAGCAGAC
TTCGGGGCTGAGCTAGACAATCAAGATTTACCAGAAGAGTTCCAACTCGA
GGTTGCTTCTGAATGA

Synonyms

Publications