rna6994, rna6994 (mRNA) Nannochloropsis gaditana

Overview
Namerna6994
Unique Namerna6994
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length3073
Alignment locationCM002470.1:201128..202184 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100030g15.4164.mrna
Orig protein idgnl|cribi|Naga_100030g15.4164
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002470.1supercontigCM002470.1:201128..202184 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100030g15gene6760Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6994rna6994-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23667.1cds6978Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6994 ID=rna6994|Name=rna6994|organism=Nannochloropsis gaditana|type=mRNA|length=3073bp
ATGCGCGTGGCCGGGCCTGAGGTTGTGGGCCGGCTCGTGGGGGAGACGGA
AAGCCGGCTTCGCCGCGCCTTCAGGGAGGCCAGGGCCCGGGCGCCGACGG
TGATGGTGCTGGACGAGGTGGAGGCGCTGTGCCCCCGGCGCGAGGCGGCC
TCCTCGGACCTGGACCGGCGCATGGTCGCGACCCTCCTCGCCCTCCTGGA
CGGCTTCCAAGGCTTGGACCGGGTCGTGGTGCTGGCGGCGACGAGCCGAC
CCCAGGCCCTTGACCCGGCGCTCAGGCGGCCGGGCCGTCTGGACAGGGAG
CTCGAGGTGGGCGTGCCGGGGGAGGCGGCGCGCGGGGAGATCCTGAGGGT
CCTGCTCGCGGGGACGGGCCTGGAATCCGAGGCGGCCGCGGACAGGGTGC
TCCAGCGGGTGGCAAGCCGAGCGCACGGCTTTGTCGGGGCAGATTTGCTG
CTGGTCTGCAAGGAGGCGGCCATGCTTGCTGTCAGGCGAGGGATGGAGGC
TGCGGGAGGGGGGGCGGGGAGGGACGGCGGAGACCCCGTGCGCATGACGG
GCGAGGATTTGGTGGCGGCCCTGGCGCTGGTGCGGCCGAGCGCCTTGAGG
GAAGTGGCGGTGGAGGTGCCGCGGGTGCAATGGGGGGACATCGGGGGTAT
GGATCGCGTAAAGCAGTCGCTACGGGAGTGCGTGGAGTGGCCCCTGACCC
GGCCCGAGGCCTTCGTGCGCATGGGCATCGCCCCGCCCAAAGGTGTCCTT
CTGTACGGCCCCCCGGGCTGCAGCAAGACGCTCATGGCGAGAGCCTTGGC
CACCGAGTCTGGCATGAACTTTCTGGCCGTCAAGGGACCCGAGCTCCTCA
GCAAGTGGCTGGGGGAGAGTGAGAAGGCCCTGCAGGGGCTGTTCAAGAAG
GCGCGGGCCGCGGCCCCCACGGTCGTCTTCTTCGACGAGGTGGACGCGCT
GGCCGGTCGCCGGGGGGACGGGGAGGACTGCAAGGCCTCGGAGCGGGTGC
TGAGCCAGCTGCTCACGGAGCTCGACGGGGTGCAGCCCCTGCGCCGGGTG
GTGGTGGTGGCGGCCACCAACCGCCCCGACCTGCTCGACCCCGCCCTCCT
GCGCCCGGGCCGCATCGACCGAAGAGTCTACGTGCCGCCGCCGGATCTGG
CCTCGCGTCGGGAGATCCTGAAGATCGCCTTGCGGGGCGTGCCCACAGAG
AGCCCGGAAGGGGAGGCGTCGGAAGGGGCGGGAGTGGACTTGGAGGAGCT
GGCGCGGCGCACTGAGGGCTTCTCGGGCGCGGAAGTGGTGGCCCTGAGCC
GGGAGGCCGCTCTCTGCGCAGTGGAGGAGGATCCTGTCCACGCCCGCCTC
CTCCGCGGCCGGCACTTCGAGCAGGCCTTGGCTGGCTGGCAGCGGCAGAT
CACGCCGCGGATGCTGGAGTACTACCGGCGATACGCGGGTGGCTCGTGAG
GGGCCGGGCGGGGACCAGAGGGAGAAAAAGGGCGAGAGGCAAAGCAATGC
CAGACGATAAGGGTCCAGGCAGCGGGATGGGATCAGCCTTAGTTCTTCAG
TCTGCTCTGCACATACAAGGATGGCTCGCTAAGTTCCCACGTCTACTTCA
GGGGTACAGACACATGTATACGAAGTAAGCGAGGCCCAGTCCCAGCATTA
CCAAGGGGCTCAAGAGATAGGCCCACCCTGCCACTGTCTCGGGCACCTGC
ACTATCGGGCGCGCAGGAGCAACACTTGACGCTGCAGACGCGCCGGCAGA
CTCTCCCGCGCCCCGCCCTCTCCGCCTCGACACTGTCTTCGCCCCTTTCC
CCGGCTGCTCTCCCTCGGGCACTGAGGCTGAGTAAGAGGTAGATGTAAGC
GATCTCGCGCCTGTGGATCGCAGCGAGCCCAAGGATCCCTCTTGACGCAG
GACCGCGTCCAGAGGCACGGCCATGCCGGCTCGCTGGCAGGCGGTCTGTA
GGCTCTTGAGCTTCTGCAGGACAGCCAGGACCCTGTAGTCTTTCATCAGC
TTCTCGGCCTGCAAGGGCGGCAAGCGATTTTCGTTCGTCCAGTGCTTCAA
TGCCTGGCAGGATTTCACAACATGAATCAAATAAGTGGAGGAGCTGAGAC
GATTCCATTTGAGGGAATTTCCAAGTTCACAGTAATTCTGACATGCAAGT
CAATGTGAACGAGTAAATCTTAGTTGAAAAATGATATGAACATGGCAATT
TAAAATATAGAGAAAGTTTGAGCGCACAAAAAAGCAACAAGTGCCCCTTC
ATCTACAGCCCCAGACAGCTCGTGGCTTGGTTGCCTGGAGGTTGCCTGTC
CGTCAAGGAATGTGCCTATTCTCTTCCGACACTTCAAATCCATGCTGCTT
TACCGGCACACCAGTGCGCGGCAGAACTGCTGCCGTATGATATCGAATCC
CGGAATGATTGACTTACCACGCGGACCTGGGGCTGGCGCAAGTCGTCTTG
GAAGTCCGAGTCTGACGCTAACTTGGCCAGAAGTCCATTCACCGCCTCCA
TGTCCCCTATTTAATGAATCGAATTCGACTTTGAGAGGTCAATGTCGTGC
CGCGCGTCCTGTGGTAGGCCTCGTGGCCTCCTCCTTGAAGACACCATTTC
AAAGCAAGAAGACCTGAGGCAAAATTAGCGACTCGCCAACTGTCACTCAC
GTGGGAACTTGCCGCCGAGAGTGGGGCGCTTTACTGCGCAAAAGTTCTTA
CGTTGAAATGCCTTCTGATTCGCGTCGAGCGCTTAAAGATGGTAGCGAGA
TCTTGCTAGGAATGGCATCTCACGGCAGCCGTCAACATCCATGACTCACG
CGAGAGGTGAGAAGGGGCCAGAAAGAGACGCGAACGGGAGGTTAATTAGA
TATGTGAATTATTATTCCTTCCGAATTCAGTATGTACAAGGAAGGATCAG
GTTTTACCTGGCCTCGTACATCTACGTATATGAGAAAGAACCACGAATCG
CCCACGTCGCACCCTTCAATAAAAAAAGGAACTGCTGAAAGGACATGCTA
GTATTATTTCCTTTTTTTTACACATTATTCACGTTTTGGTTGTCTGACGT
CCGAGAAATGACCATCGACCTTT
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protein sequence of rna6994

>rna6994-protein ID=rna6994-protein|Name=rna6994|organism=Nannochloropsis gaditana|type=polypeptide|length=179bp
MEAVNGLLAKLASDSDFQDDLRQPQVRVALKHWTNENRLPPLQAEKLMKD
YRVLAVLQKLKSLQTACQRAGMAVPLDAVLRQEGSLGSLRSTGARSLTST
SYSASVPEGEQPGKGAKTVSRRRGRGAGESAGASAASSVAPARPIVQVPE
TVAGWAYLLSPLVMLGLGLAYFVYMCLYP
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mRNA from alignment at CM002470.1:201128..202184+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6994 ID=rna6994|Name=rna6994|organism=Nannochloropsis gaditana|type=mRNA|length=1057bp|location=Sequence derived from alignment at CM002470.1:201128..202184+ (Nannochloropsis gaditana)
aGGCCTACCACAGGACGCGCGGCACGACATTGACCTCTCAAAGTCGAATT
CGATTCATTAAATaggggacatggaggcggTGAATGGACTTCTGGCCAAG
TTAGCGTCAGACTCGGACTTCCAAGACGACTTGCGCCAGCCCCAGGTCCG
CGTGGTAAGTCAATCATTCCGGGATTCGATATCATACGGCAGCAGTTCTG
CCGCGCACTGGTGTGCCGGTAAAGCAGCATGGATTTGAAGTGTCGGAAGA
GAATAGGCACATTCCTTGACGGACAGGCAACCTCCAGGCAACCAAGCCAC
GAGCTGTCTGGGGCTGTAGATGAAGGGGCACTTGTTGCTTTTTTGTGCGC
TCAAACTTTCTCTATATTTTAAATTGCCATGTTCATATCATTTTTCAACT
AAGATTTACTCGTTCACATTGACTTGCATGTCAGAATTACTGTGAACTTG
GAAATTCCCTCAAATGGAATCGtctcagctcctccacttATTTGATTCAT
GTTGTGAAATCCTGCCAGGCATTGAAGCACTGGACGAACGAAAATCGCTT
GCCGCCCTTGCAGGCCGAGAAGCTGATGAAAGACTACAGGGTCCTGGCTG
TCCTGCAGAAGCTCAAGAGCCTACAGACCGCCTGCCAGCGAGCCGGCATG
GCCGTGCCTCTGGACGCGGTCCTGCGTCAAGAGGGATCCTTGGGCTCGCT
GCGATCCACAGGCGCGAGATCGCTTACATCTACCTCTTACTCAGCCTCAG
TGCCCGAGGGAGAGCAgccggggaaaggggcgaagACAGTgtcgaggcgg
agagggcggggcgcgggAGAGTCTGCCGGCGCGTCTGCAGCGTCAAGTGT
TGCTCCTGCGCGCCCGATAGTGCAGGTGCCCGAGACAGTGGCAGGGTGGG
CCTATCTCTTGAGCCCCTTGGTAATGCTGGGACTGGGCCTCGCTTACTTC
GTATACATGTGTCTGTACCCCTGAAGTAGACGTGGGAACTTAGCGAGCCA
TCCTTGTATGTGCAGAGCAGACTGAAGAACTAAGGCTGATCCCATCCCGC
TGCCTGG
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Coding sequence (CDS) from alignment at CM002470.1:201128..202184+

>rna6994 ID=rna6994|Name=rna6994|organism=Nannochloropsis gaditana|type=CDS|length=1080bp|location=Sequence derived from alignment at CM002470.1:201128..202184+ (Nannochloropsis gaditana)
atggaggcggTGAATGGACTTCTGGCCAAGTTAGCGTCAGACTCGGACTT
CCAAGACGACTTGCGCCAGCCCCAGGTCCGCGTGGCATTGAAGCACTGGA
CGAACGAAAATCGCTTGCCGCCCTTGCAGGCCGAGAAGCTGATGAAAGAC
TACAGGGTCCTGGCTGTCCTGCAGAAGCTCAAGAGCCTACAGACCGCCTG
CCAGCGAGCCGGCATGGCCGTGCCTCTGGACGCGGTCCTGCGTCAAGAGG
GATCCTTGGGCTCGCTGCGATCCACAGGCGCGAGATCGCTTACATCTACC
TCTTACTCAGCCTCAGTGCCCGAGGGAGAGCAgccggggaaaggggcgaa
gACAGTgtcgaggcggagagggcggggcgcgggAGAGTCTGCCGGCGCGT
CTGCAGCGTCAAGTGTTGCTCCTGCGCGCCCGATAGTGCAGGTGCCCGAG
ACAGTGGCAGGGTGGGCCTATCTCTTGAGCCCCTTGGTAATGCTGGGACT
GGGCCTCGCTTACTTCGTATACATGTGTCTGTACCCCTGAatggaggcgg
TGAATGGACTTCTGGCCAAGTTAGCGTCAGACTCGGACTTCCAAGACGAC
TTGCGCCAGCCCCAGGTCCGCGTGGCATTGAAGCACTGGACGAACGAAAA
TCGCTTGCCGCCCTTGCAGGCCGAGAAGCTGATGAAAGACTACAGGGTCC
TGGCTGTCCTGCAGAAGCTCAAGAGCCTACAGACCGCCTGCCAGCGAGCC
GGCATGGCCGTGCCTCTGGACGCGGTCCTGCGTCAAGAGGGATCCTTGGG
CTCGCTGCGATCCACAGGCGCGAGATCGCTTACATCTACCTCTTACTCAG
CCTCAGTGCCCGAGGGAGAGCAgccggggaaaggggcgaagACAGTgtcg
aggcggagagggcggggcgcgggAGAGTCTGCCGGCGCGTCTGCAGCGTC
AAGTGTTGCTCCTGCGCGCCCGATAGTGCAGGTGCCCGAGACAGTGGCAG
GGTGGGCCTATCTCTTGAGCCCCTTGGTAATGCTGGGACTGGGCCTCGCT
TACTTCGTATACATGTGTCTGTACCCCTGA
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Synonyms
Publications