rna6992, rna6992 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6992
Unique Name	rna6992
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2038
Alignment location	CM002470.1:198507..200828 +

Link to JBrowse

Properties


Property Name	Value
Product	aaa-type atpase family protein
Orig transcript id	gnl\|cribi\|Naga_100030g14.4189.mrna
Orig protein id	gnl\|cribi\|Naga_100030g14.4189
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002470.1	supercontig	CM002470.1:198507..200828 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100030g14	gene6758	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6992	rna6992-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM23692.1	cds6976	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002470.1:198507..200828+
coding sequence from alignment at CM002470.1:198507..200828+

mRNA sequence

>rna6992 ID=rna6992|Name=rna6992|organism=Nannochloropsis gaditana|type=mRNA|length=2038bp
AAACCGTGCGGTGAATCGTGTCGAGAAGAAGCTAGAACGGCACCTTTCCA
GCTTTCGGGAGGACCGTGCCCCTCTTGGCGTGGATTTGTGACTTTAGGAC
TTTGCCCGGGACGTGGGAGAGATGAGAGTACACGGAGCTTCTTCAAGCTA
TACCTCTGAGAAGCAATCAGCCCTGTAACGTAAGGCACGTTCAGCCGTCT
CACTTCCCCACCTCCGTAATAATGCATCTGACAGGAGACATTTCTTTCGG
GAGACTTGAGCCTGAGATCTTTTCCATCAGGCTTTCGGCTTTGAGACGCC
ATCGTCCGCGTTGAAGGAGGGAGCATACAGCCTGAGGGAGGCGCCGTCTG
TTCTGCCCTAACTGAGGAGAGCTCTGTGCAACGCGAAGGCTATAAAAGAC
ACTTTGCGGCAACCAAAAATCAAGCTTCATAAAGAGAAGGGGGATCGGTA
CCTTTTATAAAACATGGCATCGCGCGTCCCAGCATCATGTTGTCGAAGGG
GGCCGTACAAAGACAACAGGGCCCTGACGGAGGTAGCTACTCCACCTTGT
ATTGTGCGTGTCTCTCCCAATGGTGCGGAGGGCTTGACACGGCCCCTGGA
CCTTGCGTATTGGCTTGGACTACAGGATTCATACAGCACGAAATTGCCTA
TCTCTCTCAAGTCGGTGGTGGCGCTTATTCGGTCATTGGAGGGCCGAGAC
AAAGTCACCAAGACCATCCAGTACGCCTGCCGCTTCCTGTGGTGGTATCA
CAAGACATACGCCCCCCAGGACAAGATCCGCGGTCCACGCTTTGAGAAAA
TGTTCCGGGCTTCCCAAATGGCGCGAAAATGCTTCCACCTCTTCCGGACC
CTGGAGGAGCTGGAGAAGCTGCAGGCCCTGTGCGCCGACTCCAAGTCCCC
GTTTTGGCGCCGAAACCTCTTGATGGTGCGGGCGGCGGCAATGGCCATTT
ATTGGTACTATGACAACACCTGCTTCCTCATCAACGCCAAGCTCTCCAGC
TTCGACCAGCGGACGGCTGTGGCCCGAGACGGCGCGGCATGGACCCTAGC
CAACCTGATCTCGATCGGACTGGCGCTCTACGACCTAGATCGCAACGGGA
AGGAGCGAAGTCGCCTCGAGGATAAGGCGGCAGCGCTATTGAAGGCGCGT
TCCAGCAACCATGTAGTAGGCGGGGCGGCGGAGGAAAGGGCGATGGGGAG
GGACGGAAAGGTGGAGGCGAATGGGCATGGGCACAGCGACGCCCACGGTA
GGAAGGAAATGGAAAATGGAACGCTCACAGCCAGCAGCAGCAGTAGTAGT
AGCAGCAGCAGCCAGCCGCAGGGGGGAGACACGGTGGCGGAGGCAGACGT
GGAAGAGTCATTGGAGGAGATGGCGCAGGCGAGCGTGAAGCGCTTCGACC
TGGTCGGGGACCTCATTCGGGTCTCGTGCGACTTCCTGGTGGCCTGCAAC
ACCCCGGGCTTCGACTTGCCTCTGCACACGCTCGGGTTCCGGCTGCACGA
CGGCATCATCGGCACGGCGGGGCTGGTCTCGGCGCTCTTCGCGGTGTACA
AGGCCTATCCCGCGGATATGGGCCGCTTGCGGAAGCGCCGACTCATGCGC
CTGCTGCCGACAGGGCCTTGAGAAGGAGAGGGATGGAGAGGAAAGGCTGG
AGTGTGTCTCAGGTGGGCGTGTCGTAACCCTGGAGAGTCTTTGCTTCTCT
GGACGCCTGCGGGTGTAATTGGCACGGGTGGATGAACTTGCCCGTCCGGG
GACAAGCGCTGGCGGGCGTGAGACTGACAATTTCCACACTGAGCAATGCT
TGTGGAGGCAGAGCGGAGTTTTGGCTGAAATAGCTGGCATGTTTATAAAT
GATTCCGATATTCACCGACAGCCTGTTGGAAACATGAAAGCCACGTCTCT
CTTTGTGAAGATATGCAACAAATTCTGCTTCGACTTGACGTAACAATTCT
GCCTTTTTGCGTTGTCGAAATGACCGACAAGCATTTAACTCGAAATAAAC
TTGGGAGGCACGAACAATTGAAAGAGTAGCTTCGCTTT

protein sequence of rna6992

>rna6992-protein ID=rna6992-protein|Name=rna6992|organism=Nannochloropsis gaditana|type=polypeptide|length=642bp
MIRKRHAAVGPAAALLRTSSGAIPATPFSFFVPSCESRPSCTWTARGMPS
RPLHVRQAKDSASVDRALVAAALASVAAASFIAQPWTKSDMEAVQGPGGS
GGSDDNSKVKDKLLPMSEVMSQIQDRLKQFRTERFLAPSHRGPGRSGGEG
SRRTRDPLQAATSFPKIAVLTKGRSAEEPFTIEVPLPARGGSEARVLAAS
LQALQKKGHTITFHTGLASDQGTSLSFVLADQSGSLLLTSSPAASVPSEA
PQAVLPARPGTSRLLLFKKEGFTEGDVDAVVESYISAWSGNAGDPIAGNF
ASILDAFRAGGTAGVQQFLDSEQDTPLPFFPPSTRGALDRPGVVMGGNQE
TDTAGRNDPVARLRKLGAEVFEKGKGEEVDWSCLAGYEGVKAEVEDTVVM
ALQHAEAYEAIARQTRERYESNRPRAVLFEGPPGTGKTLTARIVASRTEV
PLVFVPTERVLSKWYGDSEKNLAKIFEACQELGGAIIFIDEVDALATSRD
SNMHEATRRLLSVILQSIEGFKGGSQNVLICATNRRQDLDSALLSRFDVS
IKFELPALGARQAIFARYAKHLKAEELARLAEASEGFSCRDIKETCENVE
RKWASKTLRGQERGPTPVLQEYLQQLKAMHLAHRRSPQSHNL

mRNA from alignment at CM002470.1:198507..200828+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6992 ID=rna6992|Name=rna6992|organism=Nannochloropsis gaditana|type=mRNA|length=2322bp|location=Sequence derived from alignment at CM002470.1:198507..200828+ (Nannochloropsis gaditana)
TCGTCGCCTTCGGGCGCTCCCAAGGCGGAACACGCCGAAGACTCGCAAAC
TGTTAAGGGGCGCTCAGCTGCCAAAGGTGGTGGGAGTATTTATGACTGTC
AGAGTACTTACGTTTCCACGAAGAAACAGGGGTTCCTCACTTTGTCCGCC
TTGACCCCACCCGTGACAGGCTGAATGATTCGGAAGCGCCACGCGGCTGT
CGGCCCAGCCGCCGCCCTTTTGCGGACTTCCTCAGGAGCCATACCGGCTA
cacctttctctttcttcgttCCTTCGTGTGAAAGTCGTCCTTCATGCACG
TGGACCGCGAGGGGGATGCCCTCCCGACCTCTTCATGTCAGGCAAGCCAA
AGACTCAGCTTCCGTCGACAGAGCCTTGGTGGCCGCGGCCCTGGCAAGTG
TAGCGGCTGCCTCCTTTATCGCGCAGCCATGGACAAAAAGTGACATGGAA
GCGGTCcaggggcctggaggatcAGGAGGCAGCGATGACAATAGCAAAGT
GAAAGATAAACTGCTGCCAATGTCAGAAGTGATGTCTCAAATACAAGACC
GACTCAAGCAATTTCGCACGGAGCGGTTCCTTGCGCCTTCGCACCGAGGC
CCCGGCCGCAGTGGTGGCGAGGGCTCTAGGCGCACCAGAGACCCCCTACA
GGCCGCCACAAGCTTCCCCAAGATCGCGGTGCTGACGAAAGGCAGGAGTG
CAGAAGAACCCTTCACGATCGAGGTGCCCCTGCCGGCGCGAGGCGGTAGC
GAAGCCCGGGTCCTGGCCGCGTCCTTGCAGGCGCTTCAGAAGAAGGGCCA
CACCATCACCTTCCACACGGGCCTCGCCAGCGACCAGGGCACCAGCCTGT
CCTTCGTTCTGGCCGATCAGtccggctccctcctcctcacgtctTCGCCC
GCTGCGTCCGTGCCCTCTGAGGCCCCGCAAGCTgtcctgcccgcccgccc
aggCACGTCCAGACTCCTGCtcttcaagaaggagggcttcaccgaggggg
acgtggacgCCGTGGTCGAATCCTACATCTCGGCCTGGAGCGGCAACGCC
GGGGACCCGATTGCCGGGAACTTCGCCAGCATTTTGGATGCCTTCCGCGC
CGGTGGCACTGCCGGCGTCCAGCAGTTCTTGGACTCGGAGCAGGACAcac
ctctccccttctttcccccgtccaCGCGCGGCGCCTTGGACCGGCCAGGG
GTCGTGATGGGGGGTAACCAGGAGACTGATACGGCCGGGAGAAACGATCC
GGTCGCTCGGCTGCGCAAGCTTGGGGCGGAGGTGTtcgagaagggcaagg
gggaggaggtggactgGAGCTGCCTGGCCGGCTACGAGGgcgtgaaggcg
gaggtggaggacacggtCGTGATGGCCTTGCAGCACGCGGAGGCGTACGA
GGCCATCGCCCGGCAGACGCGGGAGCGATACGAGTCCAACCGACCCAGGG
CCGTCCTCTTCGAGGGCCCCCCGGGCACGGGAAAGACGCTGACAGCCCGC
ATCGTCGCCTCGCGCACCGAGGTCCCTCTGGTCTTTGTCCCCACCGAGCG
CGTGCTCAGTAAGTGGTACGGGGACTCGGAGAAGAATCTGGCCAAGATTT
TTGAGGCCTGCCAGGAACTGGGCGGCGCGATCATTTTTATCGACGAGGTG
GACGCGCTGGCCACAAGCCGAGACTCGAACATGCATGAGGCGACCCGCCG
GCTCCtctccgtcatcctccaGAGCATCGAGGGCTTCAAGGGCGGCAGCC
AAAACGTTCTGATCTGCGCCACCAATCGCAGACAGGACCTGGACTCCGCC
TTGCTCTCTCGCTTCGACGTGTCCATAAAGTTCGAGCTGCCAGCGCTCGG
GGCACGTCAGGCGATCTTCGCACGGTACGCCAAGCACCTGAAAGCCGAGG
AGCTGGCCCGCTTGGCTGAGGCCTCGGAAGGCTTTTCTTGCCGGGATATT
AAGGAGACTTGTGAGAACGTGGAGCGCAAGTGGGCGTCCAAGACCCTCCG
TGGCCAGGAACGGGGGCCAACGCCCGTTTTGCAAGAGTACCTGCAGCAGC
TGAAGGCGATGCACCTGGCTCACCGCCGGTCTCCTCAGTCCCACAATTTG
TGAAGAATGTGATAAAAATAAAGGTCGATGGTCATTTCTCGGACGTCAGA
CAACCAAAACGTGAATAATGTgtaaaaaaaaggaaataaTACTAGCATGT
CCTTTCAGCAGTTCCTTTTTTTATTGAAGGGTGCGACGTGGGCGATTCGT
GGTTCTTTCTCATATACGTAGATGTACGAGGCCAGGTAAAACCTGATCCT
TCCTTGTACATACTGAATTCGG

Coding sequence (CDS) from alignment at CM002470.1:198507..200828+

>rna6992 ID=rna6992|Name=rna6992|organism=Nannochloropsis gaditana|type=CDS|length=1929bp|location=Sequence derived from alignment at CM002470.1:198507..200828+ (Nannochloropsis gaditana)
ATGATTCGGAAGCGCCACGCGGCTGTCGGCCCAGCCGCCGCCCTTTTGCG
GACTTCCTCAGGAGCCATACCGGCTAcacctttctctttcttcgttCCTT
CGTGTGAAAGTCGTCCTTCATGCACGTGGACCGCGAGGGGGATGCCCTCC
CGACCTCTTCATGTCAGGCAAGCCAAAGACTCAGCTTCCGTCGACAGAGC
CTTGGTGGCCGCGGCCCTGGCAAGTGTAGCGGCTGCCTCCTTTATCGCGC
AGCCATGGACAAAAAGTGACATGGAAGCGGTCcaggggcctggaggatcA
GGAGGCAGCGATGACAATAGCAAAGTGAAAGATAAACTGCTGCCAATGTC
AGAAGTGATGTCTCAAATACAAGACCGACTCAAGCAATTTCGCACGGAGC
GGTTCCTTGCGCCTTCGCACCGAGGCCCCGGCCGCAGTGGTGGCGAGGGC
TCTAGGCGCACCAGAGACCCCCTACAGGCCGCCACAAGCTTCCCCAAGAT
CGCGGTGCTGACGAAAGGCAGGAGTGCAGAAGAACCCTTCACGATCGAGG
TGCCCCTGCCGGCGCGAGGCGGTAGCGAAGCCCGGGTCCTGGCCGCGTCC
TTGCAGGCGCTTCAGAAGAAGGGCCACACCATCACCTTCCACACGGGCCT
CGCCAGCGACCAGGGCACCAGCCTGTCCTTCGTTCTGGCCGATCAGtccg
gctccctcctcctcacgtctTCGCCCGCTGCGTCCGTGCCCTCTGAGGCC
CCGCAAGCTgtcctgcccgcccgcccaggCACGTCCAGACTCCTGCtctt
caagaaggagggcttcaccgagggggacgtggacgCCGTGGTCGAATCCT
ACATCTCGGCCTGGAGCGGCAACGCCGGGGACCCGATTGCCGGGAACTTC
GCCAGCATTTTGGATGCCTTCCGCGCCGGTGGCACTGCCGGCGTCCAGCA
GTTCTTGGACTCGGAGCAGGACAcacctctccccttctttcccccgtcca
CGCGCGGCGCCTTGGACCGGCCAGGGGTCGTGATGGGGGGTAACCAGGAG
ACTGATACGGCCGGGAGAAACGATCCGGTCGCTCGGCTGCGCAAGCTTGG
GGCGGAGGTGTtcgagaagggcaagggggaggaggtggactgGAGCTGCC
TGGCCGGCTACGAGGgcgtgaaggcggaggtggaggacacggtCGTGATG
GCCTTGCAGCACGCGGAGGCGTACGAGGCCATCGCCCGGCAGACGCGGGA
GCGATACGAGTCCAACCGACCCAGGGCCGTCCTCTTCGAGGGCCCCCCGG
GCACGGGAAAGACGCTGACAGCCCGCATCGTCGCCTCGCGCACCGAGGTC
CCTCTGGTCTTTGTCCCCACCGAGCGCGTGCTCAGTAAGTGGTACGGGGA
CTCGGAGAAGAATCTGGCCAAGATTTTTGAGGCCTGCCAGGAACTGGGCG
GCGCGATCATTTTTATCGACGAGGTGGACGCGCTGGCCACAAGCCGAGAC
TCGAACATGCATGAGGCGACCCGCCGGCTCCtctccgtcatcctccaGAG
CATCGAGGGCTTCAAGGGCGGCAGCCAAAACGTTCTGATCTGCGCCACCA
ATCGCAGACAGGACCTGGACTCCGCCTTGCTCTCTCGCTTCGACGTGTCC
ATAAAGTTCGAGCTGCCAGCGCTCGGGGCACGTCAGGCGATCTTCGCACG
GTACGCCAAGCACCTGAAAGCCGAGGAGCTGGCCCGCTTGGCTGAGGCCT
CGGAAGGCTTTTCTTGCCGGGATATTAAGGAGACTTGTGAGAACGTGGAG
CGCAAGTGGGCGTCCAAGACCCTCCGTGGCCAGGAACGGGGGCCAACGCC
CGTTTTGCAAGAGTACCTGCAGCAGCTGAAGGCGATGCACCTGGCTCACC
GCCGGTCTCCTCAGTCCCACAATTTGTGA

Synonyms

Publications