rna6988, rna6988 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6988
Unique Name	rna6988
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1776
Alignment location	CM002470.1:183661..185411 -

Link to JBrowse

Properties


Property Name	Value
Product	trna (guanine-n -)-methyltransferase
Orig transcript id	gnl\|cribi\|Naga_100030g10.4168.mrna
Orig protein id	gnl\|cribi\|Naga_100030g10.4168
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002470.1	supercontig	CM002470.1:183661..185411 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100030g10	gene6754	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6988	rna6988-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM23671.1	cds6972	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002470.1:183661..185411-
coding sequence from alignment at CM002470.1:183661..185411-

mRNA sequence

>rna6988 ID=rna6988|Name=rna6988|organism=Nannochloropsis gaditana|type=mRNA|length=1776bp
CCCGCTAGTCGTTCATAATGAGTTCACACCCCTGTCTAATTCAGGCACGC
ATACACTGGAAGCAAATATAGGCAGGAAGTCGGCAATTTCGTTAACCTCC
CCCTATGACCATGACGGAAGCTAGCCATGAAAATGTCTTACCACGAGCCC
CAACTTGCTTTCACGCTGGTGTCTTACACCAGGTATGTATTTTTTCCGCT
AATCTCTATCCTTGCAAGACACCACTCTGGCTGCTTCATTTGATCAGAGG
TCGCGATTTCATTCCTTACATTTCCGTGCGACGTCCCTTTCTGTTGGTTG
GAGCAGCGACAAACATCACTCACCGTTACTCCGACTCACACTGCGGACAC
AAAAATATCACTCAGCGTCACACGGACCAAAAAACCTTACATTGCGGGCA
CGACCGCAACAACCCTAACCCTCACCACCACTGGCTTCCCATTTCTCCCT
GTCTGATCGCGGGTCTCTGGGTGGGTGGACTTTGCGGTGCCTGAAAGGAC
GGGCGGCCCCAAAATTTATCATCAAATTTCAGGCCCAAAAGCATGCAGCC
ACCGCCCTACGACGCTGCTATTCAACAACAGCCCTCAAAGCCTCCTCGCG
GCAAATACGAGTCGTTGTCACCAACTCCAGCTTCCATGAAACAAGAAATC
AAACTAATCAACAATGCAGCAGAACGTCGCAAATACGAGGATCTAGCCGA
TCTCTTCTCCATCATTAAGGCGACAGAACACCTGGAAATTGCCTTCGCCC
GCGATGCAATAAGCGAGGACGATTACACTGCTGCTTGTAGTAAGCTTATA
TCACAGTTCAAATCAACCGAGGCGGCTGTGCTGGCAGCCAAGACTGTGGC
AGATGCCCGTGCATTCATGACAGAATATCACATGGATTGTCCGCGTGCCG
TGGAGCGATTGCTGCGTTTAGGAGTGCCCTCCACCGTGTTAAACCCCTCC
GTGGACGACGGACGCGGGGATGCCATCAAAGTGGCGGAGACCGTGCAGTA
TTTCATCACGGCCATGGATGGTGTGCGTTTGGAGCAACGGGCCGTGGACG
AGTTGCAGCCCATGCTCACGGACATCATGACAAGTCTGAGGCGGGTCCAG
GGCCTTCCGGCGGAATTTCTGGGTAGCAAGAAGCTGGAGGAGTGGCTCGT
GACGTTGAACGCCATGCGGGCGATGGACGCGATCACAGAGGAGCAGGCGC
GGCAATTGCTGTTCGACCTCGACCAAGGTTACAGCAGCTTCCACGCCTGG
CTGAAGTCCTTGGACTAGGAGAAAGAAATTCCATCCCTTGTACACATGCG
GGCATGGCGGCCCCTCTCCCTGTCCGCAGTGCGGCGAGATGGGAGGAGCT
GGCGGGCGTTCGACACAATCGCTGTTTCTTTGAGCGCGTCCGGTTCCGGT
GGTTTCGAATGGGCGATGTAGGCTCTGGCTGGACGCACACCGCAGCCTCG
CTTCTATCTATCCCCAGGCCCTCTCTCCCGCACGCTCCGCCTCAATCCCC
GCCATCCCTGTCCCCCTAATCGTCCTTACCCTTGAGCGCTCCCGCTGCCC
ACCCCCTCCAGCGCTCAACCCCCCCAGCCAGGCCCCCGCCTCTCTCTCCT
GAGATGCCTCCCTCCACCTCTTCCTCTCCTGAGACCGTCCACGGCACCGT
ACACGCCCAGCTCCTGGCTTTAGCCTCCTGTCCTCACGAAAATGTACATC
CCTCCCTCACGCCAGACCATCGAGGCTGTCGCCTCAAGCTTTCCGACGCA
CCATCACCTGCCGTGACTTCTCCCCC

protein sequence of rna6988

>rna6988-protein ID=rna6988-protein|Name=rna6988|organism=Nannochloropsis gaditana|type=polypeptide|length=492bp
MSPIGTIPARSDTSDAVSHPDAHEEVSLDPSAFRRTFRVAALRLPAKYCN
SAVKQLQPHLLRLRHVKGIVKPEDGGDTHRLLLLATEVNEQHEDTAVELT
DLPDDVKTFVHATNAQEDPTPAAEAEPPCSRVSLTTHQVHLDYASFSAEE
VLRQVFAPLRLEAPTSFETVDHVAHLNLRDAHLPYKRLIAQVILDKNAPR
IRTVVNKLGSIQTQYRTFPLEVLAGESDLNVSVREAGATFRFNFAEVYWN
SRLSTEHARLVNAVVAHFHASRPRVPLASCVVWDVFAGVGPFAIPLGLRG
CVVHANDLNPRSHHYLVDNIARNKVGAYVTPYNRDGRDFLRERARQHQPV
DHIIMNLPATALEFLDTFAAEREETAGEEEGRSRGLFDYLEARPIVHAYC
FSKAEDPTAEALARASAILGCVLVNGKNGVSVHRVRDVAPKKEMLCLSFP
LPRHCEFNFSRKRAMESEREKEGREDTVDMVQKRSKGVGDGT

mRNA from alignment at CM002470.1:183661..185411-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6988 ID=rna6988|Name=rna6988|organism=Nannochloropsis gaditana|type=mRNA|length=1751bp|location=Sequence derived from alignment at CM002470.1:183661..185411- (Nannochloropsis gaditana)
ATGAGCCCCATTGGTACCATCCCTGCGAGGTCAGACACCTCTGATGCTGT
CTCCCATCCTGATGCACATGAAGAGGTATCGCTGGATCCTAGCGCTTTTA
GGCGAACTTTCCGTGTGGCAGCCTTGCGTCTTCCTGCGAAATATTGCAAT
TCCGCGGTCAAACAATTACAACCACATCTGCTTCGACTCCGGCACGTGAA
GGGGATCGTAAAGCCTGAAGATGGCGGCGATACACACCGCCTGTTGCTGC
TCGCAACTGAAGTCAATGAGCAACACGAAGACACAGCTGTAGAGCTTACT
GACCTTCCGGATGATGTCAAAACTTTTGTGCATGCAACAAATGTAAGTTT
ATGGTGTCGACGGCTAAGATATATGCCACAGACACTTTGTTGCTTCTTCT
GCCCCTGATAATGTAAAGACGTCTCCCAGCGTTCTCTCTACTCGAAGGAA
AAAATGGAGAGAAATTAGCAGGGTCTGTATGTGCAACGTACTTCTCCTAC
CGAGCGATACATTCCTTACCTTACATGCGTGCTCTGCGTCCACCTACCCG
ATTTTGATGTGTATACAATGCCTTGCATATTGACCACCCCTTACCACTTG
CGACTCGGACGCAGGCACAAGAGGACCCGACGCCCGCCGCCGAGGCAGAG
CCCCCTTGCTCGCGAGTCTCACTGACCACGCACCAGGTGCACCTCGACTA
CGCGTCTTTCTCGGCGGAAGAGGTGCTCAGGCAGGTGTTCGCCCCGCTTC
GTCTCGAGGCCCCTACGTCCTTCGAAACCGTCGACCACGTTGCGCACCTC
AACCTCCGCGACGCGCACCTCCCTTACAAAAGGCTCATCGCCCAAGTCAT
TCTGGACAAGAACGCGCCCCGCATCCGCACGGTGGTGAACAAGCTCGGGA
GCATTCAGACCCAGTACAGGACATTCCCCCTGGAGGTCCTCGCGGGCGAG
AGCGATTTGAACGTGTCCGTGCGAGAGGCGGGTGCCACTTTCCGGTTCAA
TTTCGCCGAGGTGTACTGGAACAGCCGGCTCTCCACCGAGCACGCGCGCT
TGGTCAACGCCGTTGTCGCCCATTTCCACGCCAGCCGCCCGAGGGTCCCC
CTCGCCTCCTGCGTCGTCTGGGACGTGTTCGCCGGCGTGGGCCCGTTCGC
CATTCCCTTGGGCCTGAGGGGCTGCGTCGTGCACGCCAACGACCTCAACC
CTCGCTCCCACCACTACCTCGTCGACAACATCGCTCGCAACAAGGTGGGC
GCCTACGTGACGCCCTACAACCGGGACGGGCGGGACTTTTTGAGGGAGCG
AGCGCGGCAACACCAACCCGTGGACCACATCATCATGAACCTCCCGGCCA
CCGCGCTCGAATTCTTGGATACTTTTGCCGCGGAGAGGGAGGAAACCGCA
GGCGAAGAGGAGGGAAGGTCCCGAGGGCTCTTCGATTACCTGGAAGCGCG
ACCCATCGTGCACGCATACTGCTTCAGCAAAGCCGAGGATCCCACAGCGG
AGGCCCTGGCGCGCGCCTCCGCGATACTCGGATGTGTGCTCGTGAATGGC
AAAAACGGGGTAAGCGTGCATCGTGTCAGAGATGTGGCTCCCAAGAAAGA
GATGCTTTGTCTCTCTTTCCCCCTGCCGCGGCACTGCGAGTTTAACTTCA
GTCGCAAGAGAGCGATGGAAAGCGAGAGGGAAAAGGAAGGGCGCGAGGAC
ACGGTGGACATGGTGCAGAAACGAAGCAAGGGTGTGGGGGATGGGACGTG
A

Coding sequence (CDS) from alignment at CM002470.1:183661..185411-

>rna6988 ID=rna6988|Name=rna6988|organism=Nannochloropsis gaditana|type=CDS|length=2958bp|location=Sequence derived from alignment at CM002470.1:183661..185411- (Nannochloropsis gaditana)
GCACAAGAGGACCCGACGCCCGCCGCCGAGGCAGAGCCCCCTTGCTCGCG
AGTCTCACTGACCACGCACCAGGTGCACCTCGACTACGCGTCTTTCTCGG
CGGAAGAGGTGCTCAGGCAGGTGTTCGCCCCGCTTCGTCTCGAGGCCCCT
ACGTCCTTCGAAACCGTCGACCACGTTGCGCACCTCAACCTCCGCGACGC
GCACCTCCCTTACAAAAGGCTCATCGCCCAAGTCATTCTGGACAAGAACG
CGCCCCGCATCCGCACGGTGGTGAACAAGCTCGGGAGCATTCAGACCCAG
TACAGGACATTCCCCCTGGAGGTCCTCGCGGGCGAGAGCGATTTGAACGT
GTCCGTGCGAGAGGCGGGTGCCACTTTCCGGTTCAATTTCGCCGAGGTGT
ACTGGAACAGCCGGCTCTCCACCGAGCACGCGCGCTTGGTCAACGCCGTT
GTCGCCCATTTCCACGCCAGCCGCCCGAGGGTCCCCCTCGCCTCCTGCGT
CGTCTGGGACGTGTTCGCCGGCGTGGGCCCGTTCGCCATTCCCTTGGGCC
TGAGGGGCTGCGTCGTGCACGCCAACGACCTCAACCCTCGCTCCCACCAC
TACCTCGTCGACAACATCGCTCGCAACAAGGTGGGCGCCTACGTGACGCC
CTACAACCGGGACGGGCGGGACTTTTTGAGGGAGCGAGCGCGGCAACACC
AACCCGTGGACCACATCATCATGAACCTCCCGGCCACCGCGCTCGAATTC
TTGGATACTTTTGCCGCGGAGAGGGAGGAAACCGCAGGCGAAGAGGAGGG
AAGGTCCCGAGGGCTCTTCGATTACCTGGAAGCGCGACCCATCGTGCACG
CATACTGCTTCAGCAAAGCCGAGGATCCCACAGCGGAGGCCCTGGCGCGC
GCCTCCGCGATACTCGGATGTGTGCTCGTGAATGGCAAAAACGGGGTAAG
CGTGCATCGTGTCAGAGATGTGGCTCCCAAGAAAGAGATGCTTTGTCTCT
CTTTCCCCCTGCCGCGGCACTGCGAGTTTAACTTCAGTCGCAAGAGAGCG
ATGGAAAGCGAGAGGGAAAAGGAAGGGCGCGAGGACACGGTGGACATGGT
GCAGAAACGAAGCAAGGGTGTGGGGGATGGGACGTGAATGAGCCCCATTG
GTACCATCCCTGCGAGGTCAGACACCTCTGATGCTGTCTCCCATCCTGAT
GCACATGAAGAGGTATCGCTGGATCCTAGCGCTTTTAGGCGAACTTTCCG
TGTGGCAGCCTTGCGTCTTCCTGCGAAATATTGCAATTCCGCGGTCAAAC
AATTACAACCACATCTGCTTCGACTCCGGCACGTGAAGGGGATCGTAAAG
CCTGAAGATGGCGGCGATACACACCGCCTGTTGCTGCTCGCAACTGAAGT
CAATGAGCAACACGAAGACACAGCTGTAGAGCTTACTGACCTTCCGGATG
ATGTCAAAACTTTTGTGCATGCAACAAATGCACAAGAGGACCCGACGCCC
GCCGCCGAGGCAGAGCCCCCTTGCTCGCGAGTCTCACTGACCACGCACCA
GGTGCACCTCGACTACGCGTCTTTCTCGGCGGAAGAGGTGCTCAGGCAGG
TGTTCGCCCCGCTTCGTCTCGAGGCCCCTACGTCCTTCGAAACCGTCGAC
CACGTTGCGCACCTCAACCTCCGCGACGCGCACCTCCCTTACAAAAGGCT
CATCGCCCAAGTCATTCTGGACAAGAACGCGCCCCGCATCCGCACGGTGG
TGAACAAGCTCGGGAGCATTCAGACCCAGTACAGGACATTCCCCCTGGAG
GTCCTCGCGGGCGAGAGCGATTTGAACGTGTCCGTGCGAGAGGCGGGTGC
CACTTTCCGGTTCAATTTCGCCGAGGTGTACTGGAACAGCCGGCTCTCCA
CCGAGCACGCGCGCTTGGTCAACGCCGTTGTCGCCCATTTCCACGCCAGC
CGCCCGAGGGTCCCCCTCGCCTCCTGCGTCGTCTGGGACGTGTTCGCCGG
CGTGGGCCCGTTCGCCATTCCCTTGGGCCTGAGGGGCTGCGTCGTGCACG
CCAACGACCTCAACCCTCGCTCCCACCACTACCTCGTCGACAACATCGCT
CGCAACAAGGTGGGCGCCTACGTGACGCCCTACAACCGGGACGGGCGGGA
CTTTTTGAGGGAGCGAGCGCGGCAACACCAACCCGTGGACCACATCATCA
TGAACCTCCCGGCCACCGCGCTCGAATTCTTGGATACTTTTGCCGCGGAG
AGGGAGGAAACCGCAGGCGAAGAGGAGGGAAGGTCCCGAGGGCTCTTCGA
TTACCTGGAAGCGCGACCCATCGTGCACGCATACTGCTTCAGCAAAGCCG
AGGATCCCACAGCGGAGGCCCTGGCGCGCGCCTCCGCGATACTCGGATGT
GTGCTCGTGAATGGCAAAAACGGGGTAAGCGTGCATCGTGTCAGAGATGT
GGCTCCCAAGAAAGAGATGCTTTGTCTCTCTTTCCCCCTGCCGCGGCACT
GCGAGTTTAACTTCAGTCGCAAGAGAGCGATGGAAAGCGAGAGGGAAAAG
GAAGGGCGCGAGGACACGGTGGACATGGTGCAGAAACGAAGCAAGGGTGT
GGGGGATGGGACGTGAATGAGCCCCATTGGTACCATCCCTGCGAGGTCAG
ACACCTCTGATGCTGTCTCCCATCCTGATGCACATGAAGAGGTATCGCTG
GATCCTAGCGCTTTTAGGCGAACTTTCCGTGTGGCAGCCTTGCGTCTTCC
TGCGAAATATTGCAATTCCGCGGTCAAACAATTACAACCACATCTGCTTC
GACTCCGGCACGTGAAGGGGATCGTAAAGCCTGAAGATGGCGGCGATACA
CACCGCCTGTTGCTGCTCGCAACTGAAGTCAATGAGCAACACGAAGACAC
AGCTGTAGAGCTTACTGACCTTCCGGATGATGTCAAAACTTTTGTGCATG
CAACAAAT

Synonyms

Publications