|
|
Properties
| Property Name | Value |
|---|
| Product | hypothetical protein |
| Orig transcript id | gnl|cribi|Naga_100030g8.4200.mrna |
| Orig protein id | gnl|cribi|Naga_100030g8.4200 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002470.1 | supercontig | CM002470.1:180294..183579 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna6986 ID=rna6986|Name=rna6986|organism=Nannochloropsis gaditana|type=mRNA|length=4349bp
TATGTATAATATGAAAAAATAAATTTCATTTCTCAAATTGATTTGTGTAC
TTACAAAGCTCCAGGTTCAAGGTTTATCAGGGCAAAAACATTGTACCCTT
GTTAGCGGCCCATTGCCCTCCCGAAGGACTTCAACCCCTTTGTTTGCCTC
ATCTTTTACGGTAGCTGGCCATGTTCTTGGGGTTTCAACGCCCAGCGGGG
AAAAAAGGAGGAAGTGGGAATAAATTGTCCAATGATGCTTTGACAAAAGG
GTCATCTTTTGCTCCTTCTTCGAATTTGGACGCAGGTTACATGCTGCAGA
ACATCGATGAGGAGTTTAACTTGCTTTTAAGGCAAAACAGACAATATGAG
GTCTCCATAACGCAGCTTCATGAGAAAATTGAAGAAAGTATTGATCGATT
TCGAACGGCTGCTCAGTCTTTGTGTGCCATTTCCGAGGCCTTCGGGAGCG
GTTGGGGCGCGACCGGGGGGGGAGGCTTATCTTTTGAGGCATGCGATTAC
ATGAACGCCACCACGATCATTGCCGGTGATGCAATAAGCGATTTCGAAAT
TGCTTTGCGAAAGCACATTATTTCCACGAAAGATTGCATCGCCCAGGAGA
ACAAGCGCATCGAGATGAAATTGAGAGCTCGCCTCGACCTCTTGCGGGCA
CATGACATTGCCTTTCGGGCCTTGGCTCGCGCTCGGGCGATCTGTACAGG
CACTACGATGGCAAGCAATGGGGTTGCCAATCCAAGTAGTTTTGAGGAAA
GGACAACGGGGTTATCGTCGCGCCCTGAAAATGACCAGGATAGCCGTGTG
GCAAGGCTTCGAACGGATTTTTTGAGGGGGCACGAGCTGATCAAAGGCGA
TCTCCGGGCCCTGCTTGCCGGTCGAGCGGCTCTCTACCACGAAATATTAG
CCGAATTGAGTGACATCCAGCTGAGGCTTCTTGGAAGAATGTACAACGCC
CTGGGTACGTCGGCGGGCTACCGAGCCGAAGTACCCGCATTAAAAAGGGA
GACGAAGGCGGAGAGGAAGCTAGAGAGGACGGGCGCAGGAGACAGTGGCG
CTGCCCGTGAGGTTTTTGACACAAGACAGAAAGGAGGGGAGAGTAAGGTC
CCCCACAGCAGTATGCACGCTGCTGCGACTGACATCAGTCAGTGGGGGAG
GGGGGTGGAGGGGTTCGTCGATCCAGCACCGCGTCTGGGAGAGCCCCCAT
CGGGGATGGATGTAGCGTCGGCGGTCTTGGAGGGGTTGGTGGCCCGTGTC
GAAGCCATCGCAATCTGTGAGCAGCGAGTAGCGGAAGAGGAGCTGACAGC
TCTATCCAACGTCGTGGCAGCGGCAGGCGGGGGCGGAGAGCGTCGCCTGT
CCTTCTTCCTGTCGGCTCAGCCCAGGCCCGTCGTGACCGGTAGCACTGCC
TTCACGGCGTCTTCCGACGCTCAATCTGTCTTGCCTGTACAGACCACACC
TGTTGCACCTGCACCAGGCAACGCTTTCGTGACGGCCGCGGGGGAGACTG
GAGTCCACGGCAATAGGACCGGGGGGGGATCCAGGGGCGATAATCCGTTG
AATAGGTTGAGGAAAATGTTAGGAAGTGGAGGAATGAAGGGAGGAGAAGG
AGGTGCTGCCGAAGAAAGCGATGTTGGAGGGTCGGGAGGGGGGCAGGGCA
GGGGAAGAGAGGAGGATCCGCAGAAAACGCAGAGTGAGCGGGAAGAGGAA
GGGCAAGGAGCGGGGCAAGAGGAGGCAAAGGACGGGTGGGCACGCCTGGA
GGACGACTTCCAGGCATCGCTTCTGGAAGCGGCTTCGAAAATTCCGACGT
GTGGGTGGAGAAAGAAGGAGGAGGAGCCGGAGGAGGGAAAGGCATCTTCG
TCGGAAGTGGCTGAAGGGACGTTTATCTCTTCAGCCAGCAGCCCCGGCAC
TCGCAGAGGCTATCTGGCCTCTCTCGCTAGCTTCAAGGCTTTCCACAACC
CCTTTAGACCGATAGGGAGAGCGCTGGGATCTCCACCCTCCCAATGCGAC
CGCAGCGAGGACAGTTGGGGTACGGCTCCCGGGGCGAGGCATCAACTCGT
CAGAGACAAGGAGACGCGGCCACAGGCATTGGGGTGGAGCCCTGAGAGAG
ACGCGGAGAAATACCAAAGCCTCACGCACCGAGAGGAAATAGCTACACTG
CGAAGCATCCTCTTTCCCTCCTACCTGCCCACCTGCTCCACCTCACCCTT
AGCGGCTGGAAACGAGACGCCCCTAACAACCTCCTTAGGCATGCCCGGGG
CATTCTCCTCGCCCTCGCATCTCCGCCCTTCTTCGAATACGACCACCACG
CCTCCACTGCCCCCGCCGCCCTTCGTCTCCAAGCACCACCCGGCCCGGCT
TGCCTGGCTCGGTGCAGGCCTTCGGTTCCTGGACGTGGTGGGCCTGGCCG
AGGCCTCATGCGTGAGTAAGGAGTGGGAAAGGTTGCTGAGGAGGGATGCG
CGAGGACACGAGGCGTGGAGACAGGCAGTGCGAGGCGGGGGGGTGCCTGA
AGGGGTACGGGCACGATTTTGGTACTACCTTCTGTACAGTCCCTCGATCC
CATGGCGGCCGTCTTTTCCTCTTCGAAGCGGAAGAGATTCTAATGGCAAA
TCGAAGTCGGCACCCGATGCATGGGCCGGAAGCAGCCCGGTCCACACGCT
TGACCTGAAAGACGAGGCGACCACGGGGGCGCATGGAGGGCGGACTCTTT
CAGGACCCCGCCTTCCGGTTCCAGGCCTTTACCAGTCATTGGTTGCGCGC
GCTCTGGAGCAGATCCGCCAATATCAGGAGGCAGGGAGGATGGCAGGGTC
CGGCTCCCCTGAAGGCGTCTTGGAAGAAGCCGGCGGCGGGTCTGCCAACG
AACGGGGAGACGAACAGGAACCTCAGCAGGCCTCTTCGGGCCTCTCGCGG
GAAGGGAATGGAGACGAAGGGGGGAAAATGGCAGGGATGGGGCGGTGCGG
AGGAGGAGGAGGAGCACGAGGACTTGAACCCCGCGAGCCGCATCACCCTC
CCCCCCGCATGCCCCTGGCGCGAGCCGATACCTACGGCCAGTATCGCTCC
AACTGGATAAACGAGATCGCTGTGGATGTGGAGAGGACCTATGTGGTCGA
ACCAGACGGAGACGCGCGCGAAAGCCTGTGTTTTCAGTCCCCGACGCCCT
CGGAGGGGTCATGCACCCCCGAGCGTCAGCGTCCCCGCCTCAGCCAGGTT
CTCCAGGCCTACGCCATCTACCACCCGCGGTTAAAATACTGTCAAGGCAT
GAATACGTGTGTAGCTTTACTCTTGATGGTGACGAAGAATGACGAGGAGG
CGGCCTTTTGGCTCTTGGTAGGGCTAGCGGAGGAGTGTGGGATGAGAGAG
GTCTGGATGGAGGGCATGCCGCGCCTCAAAGCGTGCTTCGCCGTCTTTGA
TCGACTGCTCCGCATCCGCATCCCTGATCTTCACGCGCATTTCCTCGAGA
CTGGAGTGCACGTGGCTATGTTCAGCAGCAAGTGGTTCGTCACGCTCTAC
GCCAATCTGGACACGCTGCCTCCGCAGGCTGTGTTGCGGGTATGGGATGT
CTTCCTCGTGGAGGGTTGGAGCGTGATCTTTGGAGTGGCTGTTTCATTGA
TCGAAATGCTGGAAGGCCAGCTCCGCGATTTGGACCTGGAGGACATTCTT
CGCCTTGTGCAACATCCTCGGGCAGCGTTGCTTGCATGCTCGACCACGCA
GGCGGATGGGGGCTCGCGAAGGGAGAAAGAAGAAGAGGAGGGAGGACAAG
ACGGAAGAAAGGCTCGGCAAGACGGCGACCCTCTGCAAGATGGCGAGAAA
GGGGGAGCGATACGAGGAGTGGTTGGTGAAGAAAAAGGGGGCAAGTGTGG
CATGGCTCACTGTTGTGAGGCGGGACCGAGATCAACCTTGTCTTGCATGC
CTACTATCCTTCTTCGACGAGCCAGTGCCATCGCAGAGGGTGCCCAGGTC
TTCGCAGACGTACAGAAGGAATACAATCTCTGAGCACTCTCAATGAAGTT
TTTTTTTCCTAGCGTACACTTTCTTTTTCATGTATGAAACTCGATTCAAG
AGAGTATAGCGAGTGGAGCATCTCAAGCTCTCCTATTTGGAAAAGGCATT
GGAAATGCGTAATAATCACATAAATGCGTGAAGATGAGAATCTGAACTCA
TGACATGTTCGGATTACTACTGGGTGTGCCATTCTGTACGGAATGAAAGC
CTTTGTAGAGGCGGCGTGTCCAAAAAGATGAAACCTTCATCGATTTGAAC
ATGTTAAATATCTACATATATATGAATAATCTTTCCTAAAAGATCAATCT
TTAAATACAATAACTAACAAAAGAAAGGTCATCCATTTCATGCTAGTAA back to topprotein sequence of rna6986 >rna6986-protein ID=rna6986-protein|Name=rna6986|organism=Nannochloropsis gaditana|type=polypeptide|length=303bp
MATPQQTVSADEKVEMSLDDLIKLDRKQQLVEKKKKKKPTVPPAAAKAQQ
QQQQGKDSARASKQSGARKPLKQVQAGQMRKPGQAAKKSAVQAQSKRNTA
FNQSRGIQVTPMTGITSAATGKKKAKKKKAAANMTSAGNGGAPKSGASQA
GKAMAAGFIFGGSGGAAGDKALSREGFKLPKGTTLKISISNTPKPAAAAS
VPSLRVPLKAKGGNRGGGQRVSLKAAQRERQMGAGALTRRMGRISVTQNN
RQGLFAQSRGLTFPEQVPVAQAGAGGTGGKKKKTAGGVFVGEKSRQVMVR
RKA back to topmRNA from alignment at CM002470.1:180294..183579+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna6986 ID=rna6986|Name=rna6986|organism=Nannochloropsis gaditana|type=mRNA|length=3286bp|location=Sequence derived from alignment at CM002470.1:180294..183579+ (Nannochloropsis gaditana)
TGCACAATTTTATTTTCTCGAGAACCATTTCCATGAGAGGTGATGTGCTG
CGGGGTATGTTTCAATAGATGATTGAATTGCAACTCCAGGCCCCTCACGG
CCTCGGCCAGCATGGCAACACAAGGAGGGACACTCGAGCCGCTCAATTTT
TGAAAAATGTCTGTACAACTTTTCCCATCGTGAAAGTAATGAGGAGAAAC
TATTTCTAGAATGCGCAACACAACTTGAGTTGTATTGATCTTTTATGCGC
GTGCTTAGGGCGCCTTGAGAATTGGCGAGTCTCTTagtcttcctttttct
gtTTCCACATCAAGAATCCGCATACGGCCATGGCGACCCCGCAGCAAACT
GTCAGCGCCGATGAGAAAGTGGAGATGAGTCTCGATGATCTCATTAAACT
CGATCGAAAGCAGCAGCTcgtggaaaagaagaagaaaaagaagcctACTG
TTccccctgctgctgccaaagcgcagcagcagcaacagcaaggCAAAGAT
AGTGCTAGAGCATCCAAACAAAGCGGAGCGCGCAAACCTCTGAAGCAGGT
ACAGGCAGGACAAATGCGAAAACCGGGACAAGCGGCGAAAAAGAGCGCTG
TACAAGCCCAGAGCAAGCGAAACACCGCATTCAATCAGTCTCGAGGGATT
CAAGTGACGCCCATGACTGGCATCACCAGCGCCGCGacgggcaagaagaa
ggccaagaaaaagaaagctgCGGCAAACATGACAAGTgcggggaacgggg
gggcaCCGAAATCGGGTGCAAGCCAAGCAGGCAAGGCGATGGCTGCGGGA
TTCATTTTCgggggctcggggggggcCGCAGGAGATAAAGCCTTGAGTCG
CGAGGGTTTCAAACTGCCCAAGGGTACGACGCTGAAAATTTCCATAAGCA
ACACACCTAAAccggcggccgccgcctccgttcCAAGCTTGCGGGTTCCC
CTGAAAGCAAAGGGAGGCAatcgcgggggagggcagcgcgTGAGTCTGAA
AGCTGCCCAAAGAGAGCGGCAGATGGGAGCAGGGGCGTTAACCCGGCGCA
TGGGCCGCATTTCCGTGACCCAGAACAATCGACAGGGACTGTTTGCCCAG
AGCCGCGGTCTGACCTTTCCCGAGCAGGTGCCCGtggcgcaggcgggggc
aggggggacgggcgggaagaagaagaagactgCGGGAGGGGTTTTCGTGG
GGGAGAAGTCACGGCAGGTGATGGTGCGTCGGAAAGCTTGAGGCGACAGC
CTCGATGGTCtggcgtgagggagggatgtacATTTTCGTGAGGACAGGAG
GCTAAAGCCAGGAGCTGGGCGTGTACGGTGCCGTGGACGGTctcaggaga
ggaagaggtggagggaggcatctcaggagagagaggcgggggcctgGCTG
GGGGGGTTGAGCgctggagggggtgggcAGCGGGAGCGCTCAAGGGTAAG
GACGATTAGGGGGACAGGGATGGCGGGGATTGAGGCGGAGCgtgcgggag
agagggcctgGGGATAGATAGAAGCGAGGCTGCGGTGTGCGTCCAGCCAG
AGCCTACATCGCCCATTCGAAACCACCGGAACCGGACGCGCTCAAAGAAA
CAGCGATTGTGTCGAACgcccgccagctcctcccaTCTCGCCGCACTgcg
gacagggagaggggccgcCATGCCCGCATGTGTACAAGGGATGGAATTTC
TTTCTCCTAGTCCAAGGACTTCAGCCAGGCGTGGAAGCTGCTGTAACCTT
GGTCGAGGTCGAACAGCAATTgccgcgcctgctcctctgtgATCGCGTCC
ATCGCCCGCATGGCGTTCAACGTCACGAGCcactcctccagcttcttgCT
ACCCAGAAATTCCGCCGGAAGGCCCTGGACCCGCCTCAGACTTGTCATGA
TGTCCGTGAGCATGGGCTGCAACTCGTCCACGGCCCGTTGCTCCAAACGC
ACACCATCCATGGCCGTGATGAAATACTGCACGGTCTCCGCCACTTTGAT
GGCATCCCCGCGTCCGTCGTCCACGGAGGGGTTTAACACGGTGGAGGGCA
CTCCTAAACGCAGCAATCGCTCCACGGCACGCGGACAATCCATGTGATAT
TCTGTCATGAATGCACGGGCATCTGCCACAGTCTTGGCTGCCAGCACAGC
CGCCTCGGTTGATTTGAACTGTGATATAAGCTTACTACAAGCAGCAGTGT
AATCGTCCTCGCTTATTGCATCGCGGGCGAAGGCAATTTCCAGGTGTTCT
GTCGCCTTAATGATGGAGAAGAGATCGGCTAGATCCTCGTATTTGCGACG
TTCTGCTGCATTGTTGATTAGTTTGATTTCTTGTTTCATGGAAGCTGGAG
TTGGTGACAACGACTCGTATTTGCCGCGAGGAGGCTTTGAGGGCTGTTGT
TGAATAGCAGCGTCGTAGGGCGGTGGCTGCATGCTTTTGGGCCTGAAATT
TGCTGTAGGGGTATTCAACAAGCGGGCATGAAAAcgcgaaggaaagggag
gatggagagtcTGTCCATTGTACAAACAGCGCGAATTACATACATGATAA
ATTTTGGGGCCGCCCGTCCTTTCAGGCACCGCAAAGTCCACCCACCCAGA
GACCCGCGATCAGACAGGGAGAAATGGGAAGCCAGTGGTGGTGAGGGTTA
GGGTTGTTGCGGTCGTGCCCGCAATGTAAGGTTTTTTGGTCCGTGTGACG
CTGAGTGATATTTTTGTGTCCGCAGTGTGAGTCGGAGTAACGGTGAGTGA
TGTTTGTCGCTGCTCCAACCAACAGAAAGGGACGTCGCACGGAAATGTAA
GGAATGAAATCGCGACCTCTGATCAAATGAAGCAGCCAGAGTGGTGTCTT
GCAAGGATAGAGATTAGCGGAAAAAATACATACCTGGTGTAAGACACCAG
CGTGAAAGCAAGTTGGGGCTCGTGGTAAGACATTTTCATGGCTAGCTTCC
GTCATGGTCATAGGGGGAGGTTAACGAAATTGCCGACTTCCTGCCTATAT
TTGCTTCCAGTGTATGCGTGCCTGAATTAGACAGGGGTGTGAACTCATTA
TGAACGACTAGCGGGAGAAAAGTGGCAGCTTCAAGAATGCCCCGATGCAT
TAGGTCCTACTAGAAACAGTTATGGCTTGGCAAGACAAATTGCGACCTAC
CAAACATTACCCCCCAAAAGTTCGACGCTTCTTTGTGAGATGACGCCTTG
CTGTTTCCCAGGTAGTGCTCATTTTTGTCTTTTGTTATGAGAAGCTTTGC
CGAAATAAAGCAACAAAAAAAGAACGGGCGCAATGA back to topCoding sequence (CDS) from alignment at CM002470.1:180294..183579+ >rna6986 ID=rna6986|Name=rna6986|organism=Nannochloropsis gaditana|type=CDS|length=912bp|location=Sequence derived from alignment at CM002470.1:180294..183579+ (Nannochloropsis gaditana)
ATGGCGACCCCGCAGCAAACTGTCAGCGCCGATGAGAAAGTGGAGATGAG
TCTCGATGATCTCATTAAACTCGATCGAAAGCAGCAGCTcgtggaaaaga
agaagaaaaagaagcctACTGTTccccctgctgctgccaaagcgcagcag
cagcaacagcaaggCAAAGATAGTGCTAGAGCATCCAAACAAAGCGGAGC
GCGCAAACCTCTGAAGCAGGTACAGGCAGGACAAATGCGAAAACCGGGAC
AAGCGGCGAAAAAGAGCGCTGTACAAGCCCAGAGCAAGCGAAACACCGCA
TTCAATCAGTCTCGAGGGATTCAAGTGACGCCCATGACTGGCATCACCAG
CGCCGCGacgggcaagaagaaggccaagaaaaagaaagctgCGGCAAACA
TGACAAGTgcggggaacgggggggcaCCGAAATCGGGTGCAAGCCAAGCA
GGCAAGGCGATGGCTGCGGGATTCATTTTCgggggctcggggggggcCGC
AGGAGATAAAGCCTTGAGTCGCGAGGGTTTCAAACTGCCCAAGGGTACGA
CGCTGAAAATTTCCATAAGCAACACACCTAAAccggcggccgccgcctcc
gttcCAAGCTTGCGGGTTCCCCTGAAAGCAAAGGGAGGCAatcgcggggg
agggcagcgcgTGAGTCTGAAAGCTGCCCAAAGAGAGCGGCAGATGGGAG
CAGGGGCGTTAACCCGGCGCATGGGCCGCATTTCCGTGACCCAGAACAAT
CGACAGGGACTGTTTGCCCAGAGCCGCGGTCTGACCTTTCCCGAGCAGGT
GCCCGtggcgcaggcgggggcaggggggacgggcgggaagaagaagaaga
ctgCGGGAGGGGTTTTCGTGGGGGAGAAGTCACGGCAGGTGATGGTGCGT
CGGAAAGCTTGA back to top
|