rna6979, rna6979 (mRNA) Nannochloropsis gaditana

Overview
Namerna6979
Unique Namerna6979
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1360
Alignment locationCM002470.1:165897..166543 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100030g1.4179.mrna
Orig protein idgnl|cribi|Naga_100030g1.4179
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002470.1supercontigCM002470.1:165897..166543 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100030g1gene6745Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23682.1cds6963Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6979rna6979-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6979 ID=rna6979|Name=rna6979|organism=Nannochloropsis gaditana|type=mRNA|length=1360bp
AATCTGAAGGAAGGCGTGGCCCGTTTGCGGATGGTGATGGAGCTGGGCCG
GGGCGCGGCGGAGAGTTTGGCCGTACTTCGGGGTTTATCGGCCAACGAAG
ACTCGGAGGGCTTCGAGGCCGGGGTGCAGGCCATTTTGTCGGAGAAAATC
AACGGCATTGGGGTTGAGATGAGCTCGTCGGTCCGTTCCTCCCTCCTGTC
GGGCTACCTCCGCCAGTGGGTGGCGGAGGTCCTTCTCCACCGCTCCCTCC
CCGTGCCGTGGGAGGACGGGGAGGGGAAGGTCCGGGCGGGGGACATCGGG
GCCTGGGGTCTGGCCCGACAGGTGCTGTCTTTGTCGGAGATGCAGCTCCT
GTACGTGGCCAAGGAGGCGGTTCCCACGGTCCTGGGAGAGCTGATGGCGG
AGGTGTGGGGGGAGCGGGGCGGGGAGTGGCCCGGGGGAGAGCTGGCGTTC
GAGAAAAGCTGGGGCAGGGTGTACAGGAGGCTCAAGTACGACAGGTACGA
AGGGGACACGGCCAGGACCAAGGCGGTAAGGGTGATGGCGGAGATGGTGG
AGGAGGGAGGGAGGAAGGGGGGAAAGGAGGGCGGGGAAGCTCGGCGGGAG
CAAGCGGTCCGGTGGGGATGTGAAACCCTGGAGTTGGAAGGGGAAGAATT
TGAGGCATTGGCGGAGGAACAGGGCACGTTCGAGCTGCAGACCAAGGTGT
TGGAGGTTTTCTTGGGCCCCGGGAGGATGACGGCGGAGGAGGTGGTGGAG
GCGATTGAGGAGGAGGGCCGGCGGATGCGTTTGTCCAAGGGCAGTATGCG
CAGAGCCACAACGGCCGCCGTCCAGGTCCATGTGGGGAATTTGGCGGCAC
GAGCTTTGTTCGCGGATATGGAAGGGCAGCCGCAGAAGGCGTTCAAAGAG
ATCCAGGGCACTTTGGAATTCTTGGAGGGGGACGTGGCGGAATACCGGGA
CCGGCTCGGATGCGACATCGACCCGACGGCGCGCATAGCGGACGAAGACG
GATTGCAGCTGGCCAACGTCTGCACGAAAATGATCAGTCGGCGGCAGGCC
CCGGAAGCAGCGAAGGCCTTCTTGGAGGTGTTGGGGTACAGCGATCGCGT
GGGATTGTAGGAAGACGGAGGGAGGAATAGCGGGGAAGGGTGAGAACGTC
GGTATGGAGGGAGCGGGGGGAAGAAGAGAAAGTCTTTCCTTTTTTATATG
ACATCAAAAGGTGGCAGCGAGGAGGCATCTTTCGTGGGATTAAATTAGGA
TATATTTTTTTGGAGTCTGATTGGTTGTTGTAGCTTCCTCTGCGATTGCT
TTCATTTTCTGAGGCACACCGTCGTTGTCGAGGACAGCGATCTATCCCTC
TCTCTATATA
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protein sequence of rna6979

>rna6979-protein ID=rna6979-protein|Name=rna6979|organism=Nannochloropsis gaditana|type=polypeptide|length=107bp
MVVPQDMQGPRRLRSSPTRTITLYTALLLLGGVEGSEMHGTVGGGWSLHS
AGGGVDLSRVILSFLQLLRAALDHRVRKPSPRLSCTLHYALLLPASMHPL
SHRIPSI
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mRNA from alignment at CM002470.1:165897..166543-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6979 ID=rna6979|Name=rna6979|organism=Nannochloropsis gaditana|type=mRNA|length=647bp|location=Sequence derived from alignment at CM002470.1:165897..166543- (Nannochloropsis gaditana)
ATAAAAAAATCTGACCACCGCACACATGCCCACGCAGCAAAACAGCTTGT
ACCACAGGTGACAGCCCTCGCTTAGGCGTCCGCCAGGAATGGTGGTGCCG
CAAGACATGCAAGGCCCTCGGCGTCTGCGGAGTTCCCCGACTCGGACTAT
CACCCTGTACACCGCCCTCCTCCTCCTTGGGGGGGTGGAAGGAAGTGAAA
TGCACGGTACGGTCGGAGGAGGATGGAGTCTGCATAGTGCTGGCGGAGGC
GTGGATCTCTCACGCGTGATTCTGTCTTTCTTACAGCTCCTGCGTGCCGC
GCTCGACCATCGCGTCAGAAAGCCGTCCCCCCGGCTTTCCTGCACACTCC
ATTATGCTCTTCTTCTTCCAGCGTCCATGCATCCTCTATCTCACCGCATC
CCAAGTATATAGACTTCCGTCCCGTGCGTATAGCCCCGCTTAGCGCGCGG
GGGTGGGGTTCCGGGGGGGGAGCTGGCGGGCGTGGGAGGGGAAACGGCTT
CAACGATGATGAGGACGACAACGACGAGATCGCTCGAGAGGTGTCCGTGT
TGGAGGCAGAACAAGCGCGGATCATGGCGGAGTTAGAAGCGGCGCGACTC
AAAGCTCAGCTGGCTAAGCTGCAGCAAGAGCAAGCGGGACGGGGGGG
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Coding sequence (CDS) from alignment at CM002470.1:165897..166543-

>rna6979 ID=rna6979|Name=rna6979|organism=Nannochloropsis gaditana|type=CDS|length=324bp|location=Sequence derived from alignment at CM002470.1:165897..166543- (Nannochloropsis gaditana)
ATGGTGGTGCCGCAAGACATGCAAGGCCCTCGGCGTCTGCGGAGTTCCCC
GACTCGGACTATCACCCTGTACACCGCCCTCCTCCTCCTTGGGGGGGTGG
AAGGAAGTGAAATGCACGGTACGGTCGGAGGAGGATGGAGTCTGCATAGT
GCTGGCGGAGGCGTGGATCTCTCACGCGTGATTCTGTCTTTCTTACAGCT
CCTGCGTGCCGCGCTCGACCATCGCGTCAGAAAGCCGTCCCCCCGGCTTT
CCTGCACACTCCATTATGCTCTTCTTCTTCCAGCGTCCATGCATCCTCTA
TCTCACCGCATCCCAAGTATATAG
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Synonyms
Publications