rna6973, rna6973 (mRNA) Nannochloropsis gaditana

Overview
Namerna6973
Unique Namerna6973
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1298
Alignment locationCM002470.1:141304..141937 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100366g1.8719.mrna
Orig protein idgnl|cribi|Naga_100366g1.8719
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002470.1supercontigCM002470.1:141304..141937 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100366g1gene6739Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6973rna6973-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23716.1cds6957Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6973 ID=rna6973|Name=rna6973|organism=Nannochloropsis gaditana|type=mRNA|length=1298bp
TACCAAGGCTCAGACAATTTTTTGGATTCCTGTGGAGCCATATTTTTTGT
ATGGCTCCCTCTCTCTCTTTTCTTGAAGCACTTCAACCGCAAACCACGAG
CAAAAGCAAGTGGCGTGCATATGCCCTGTCTGCACAGTCGGATAATCTCC
TTCCCGGCTATTCCTACCACCCATGACAGGACTTATGGCCAAGCCACGAA
GTTTATTTATAGCAGCCCTTTTTTGGCTGTCCTGTATGGTTGCATCGTTC
CTCGTCTTGGGACTCCTCTTGGAACCCTGCTCCGCCTTTCAGCTTCCTCT
TTTCTCGCGCTCCCAATGTGGGCGCACATGTAGACATAACTCACGCCGAA
ACAGTGTCAGCAATTATGGGTATATCGATAAGGATGCCTTTCTCTCCCTC
CAGCAAGACATTTACGACCTTAAGCGTCCTCCTTCCCTCCTCATCACCGT
CGGCCCCCAATGTGCGGGGAAGACCACCCTCCTCAAGCACCTCAACGAAA
GCCGGCCTTCATTCGCGCCTCCCTTGGTGGATGTAGCCATCGATGATCAG
GCAGGTCTTTATGTGCCTCTTCCGATGCCTCTTTTCCTGGAGGGGGGGAG
GGAGGGAGGAAGGGAGGGAGGGAGGAAGGGAAGTCTGGACAAGCTGATTA
AAGGCCGGACACTTTCTTCTCGATGTGATGACTCAGCAACAGTTGAGTCC
AGATTAGTCCTGGGATATTTGCACGGGATGTGGGAGATAGAAAACGTAGA
GCAAGCGCTTCGAGCCCTTACCTCCTCCTCCTCCTCCTCCTCCTCCTCCT
CCTCCTCCTCCTCTTCCTCTTCCTCCTCCTGCCCCTCCGAAGAGGACGAA
TGGATCACTTTACTCCTACATGCTCTTGCAAAAGCGCGAGCCACTATCGC
AACGACGACCAAAGTCGATACTGTGGCTACCTGGAGCCCCCCCGCAGCCT
CCCACTACCAGCTCTTCCTCCCCGACCTCCTCCCCCAGGCCATTCGCCGA
AGCTACCAGCGATTGACTCGCAGCCTTTGTGGACCCGGGCCGGTCGCGTG
GGGCAACACGAACAGCAAGGCTCGCGACTTTAAGGAGGCGATCCTTTTGG
CGGGAAAAGCAGGACGACGGGTCCTGTTCATAAGGTGGGGAAAAGAATTG
GGGAAGGAGGTGGGGAAGGAGGAATTGGTCTTGCGCAATGTGTGGAGGGC
GTATCGGGAAGGGAAATACGTGCCAGTTCGCACCATTTTTTGCGGCCTTG
GAAAGGACCAAGGTACTTCTGAGCGGGCGGGCGGGCGGGCGGGCGGGC
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protein sequence of rna6973

>rna6973-protein ID=rna6973-protein|Name=rna6973|organism=Nannochloropsis gaditana|type=polypeptide|length=95bp
MRRCGRGRNSCGRTTGQIPGCRPRRVLISSCGSYSVPCRGIVREANLGSH
HAPRVKSPRHVQRFGLFGVGSMSLELKIAMGRRLGRWLFADERME
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mRNA from alignment at CM002470.1:141304..141937+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6973 ID=rna6973|Name=rna6973|organism=Nannochloropsis gaditana|type=mRNA|length=634bp|location=Sequence derived from alignment at CM002470.1:141304..141937+ (Nannochloropsis gaditana)
aaggaggggagtggaggaagatgaagggaTGGAGCAAGAAGGCCGCAGCG
ATGAACGAGGAGTGGCGCCGCGACTACGCACGGGCGCGGAATGAGACGat
gcgggagagggaggaattcATGCGGGAGAACAACGGGACAGATCCCTGGC
TGCAGGCCAAGGAGAGTTTTGATTTCGAGCTGTGGCAGTTACTCCGTACC
TTGTCGGGGTATCGTTAGGGAAGCAAACCTCGGAAGCCACCACGCTCCGC
GCGTCAAAAGTCCTCGACACGTGCAGCGATTTGGCTTATTTGGAGTTGGA
AGTATGTCCCTTGAGTTGAAGATTGcaatggggaggaggctgggaagATG
GCTTTTCGCGGATGAAAGGATGGAGTAACAAAGTTCCATGCACATAATTT
TAGTGGGAAACAACAATAATTTctgtcctcgtccatgcGCTTAGATTTGT
AATAGAGAATCCGCACTAATTGTGACAAATAATGGTTCATTATGAGATTA
AATTTTTGGTGCGCTTTTTGCTTTATTTATTTGCACCTGTAGTGAGATTG
GTACTATAGGTCATCAAAACTTTTGAAACCAGTGACAGACGGACTTAAGT
GGTCAGAATTCAAATCGAGGATGACACAGCCATG
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Coding sequence (CDS) from alignment at CM002470.1:141304..141937+

>rna6973 ID=rna6973|Name=rna6973|organism=Nannochloropsis gaditana|type=CDS|length=288bp|location=Sequence derived from alignment at CM002470.1:141304..141937+ (Nannochloropsis gaditana)
ATGAGACGatgcgggagagggaggaattcATGCGGGAGAACAACGGGACA
GATCCCTGGCTGCAGGCCAAGGAGAGTTTTGATTTCGAGCTGTGGCAGTT
ACTCCGTACCTTGTCGGGGTATCGTTAGGGAAGCAAACCTCGGAAGCCAC
CACGCTCCGCGCGTCAAAAGTCCTCGACACGTGCAGCGATTTGGCTTATT
TGGAGTTGGAAGTATGTCCCTTGAGTTGAAGATTGcaatggggaggaggc
tgggaagATGGCTTTTCGCGGATGAAAGGATGGAGTAA
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Synonyms
Publications