rna6964, rna6964 (mRNA) Nannochloropsis gaditana

Overview
Namerna6964
Unique Namerna6964
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1370
Alignment locationCM002470.1:124607..125564 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101519g2.7371.mrna
Orig protein idgnl|cribi|Naga_101519g2.7371
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002470.1supercontigCM002470.1:124607..125564 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101519g2gene6730Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6964rna6964-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23725.1cds6948Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6964 ID=rna6964|Name=rna6964|organism=Nannochloropsis gaditana|type=mRNA|length=1370bp
TCTGACTCGGTGCCGCTAGTCATATTTACACACTCCATGGACCCATTCAA
TGGATCACAACCTTCCTCAAGTGCACAGACACAACGCCATGACCGCTCCC
TCCATCGTGCTGGCCGGGTGCATGGTTTTTATGGCAATTGCAGTAAGTCC
GGGAGGAAACTGTGTCTAACCCCGTTTCTCCATCTCTCGCATGACTGCGT
TTTGTTCTTTTGAGGTGGCAAACTCAGATGCAACGACGGGCCTCGGTACT
TCATGACGGCTCGATATGAAACTGATTTGAATAGACACGAACGCTTGGTG
GCACATTTAATGTGCCTGCGATGGCGCATGTATGGGCGGCACCCTGCGCG
CACGCCCTCAGCAGAGGTGTCCCTGTCTCCTATCCTCTGTGATGCGTCCA
TAGACTGCGATACCACATTCTTATAGTGCCATCATAGCCTTTGTGGCTAC
TTTTGTGTACCTTCGCTTTTCGCTGCCAAAATGAGGCCCCTTGTGTCACG
TCAGCATCCATTCCGTTCCACCCTCCCCTTTCCGGCTTTCTGACTACTGG
AGACACCCTCGACGCCCGCCCTGACCTTTCTTTTTCCCACCATTTTCCAC
AACTTCAATACCAAGCCACAGCATGCTTTCCTCCAGCCTCCTCCCCTCTT
CCATCCTCCTCGCCGCGTCAGCTCCCTCCCCCGGTCCTGCCTCACCATGC
AGGAGGCGGCCGGAGTCGTCTCACCCTCCTCCTCCTCTACCTCTACCTCC
TCCTCCCCCTCCTCCCTCCGCCTCACCTTCCTGGAATCCAATTCCTGGCT
CTGGGAAATCCCTCTGCCTCCTTCCTCCCTCCCCCCCTCTCTCCCTCCCC
CCTCCCTGACGTTGCTCGTGGACCCCGTGATGCATGATTTAACCTTTGGT
GCCCCCGCCCTCATCCGCGGCAAGAAAAAAGTACTGAACGGCCCAGCCGT
GATGGAATCGCTCGCGCCAAGAGTAGATCACTTGCTCATCTCCCAAGGAT
TTGACGACCACTGTCAACCGGCTTCCATAGCCATGGCGGCCCGCCTCCTC
CCCCCTTCCGCCCACATCGTCGCGCCCCAATCGGCGTCGAAGGTTCTGGA
AACTTTTTTCTCCCCCGAACGGATTCACTACCTCTCTCCGGGGGAGCATT
GCTACCTGGAAAAAAGGCGGGAAGGAGGGCGGGACGGAGGGCGGGTTAAG
GTGACGGCAACGACGGGAGATACCTTAGGACCCCCTTGGCAAGCGCCTGA
GAACGGTTATTTGTTGGAGTGGGGGGAGAAAGGAGGGAGAGAGGAAGGGG
AGGAGCCTCGGTCTTTGTACTATGAGCCCCACTGTCGATTCAAGGTGGAG
GAGTTCGAGGTGAGGGAGGG
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protein sequence of rna6964

>rna6964-protein ID=rna6964-protein|Name=rna6964|organism=Nannochloropsis gaditana|type=polypeptide|length=115bp
MPCRYIPLDWDAEGVRSSRFVFLRFFPGVRVVPCPHGLSRRSGLASTLVF
SFSSPYKMLWSFVMFARVTCLRKMIPSRCIVFFGTFALALFLKRCLRDLG
RRPTHMVFLSTVSAI
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mRNA from alignment at CM002470.1:124607..125564+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6964 ID=rna6964|Name=rna6964|organism=Nannochloropsis gaditana|type=mRNA|length=958bp|location=Sequence derived from alignment at CM002470.1:124607..125564+ (Nannochloropsis gaditana)
ACGGCAGCAGAGTGCCAAAAATGTGCGTACAGCCCCGAACCCTCTTACTG
CAGCCTTCTGACAAAACTTTCGCATGCCTTGTCGTTACATTCCCTTGGAC
TGGGATGCAGAAGGGGTCAGGTCTTCACGCTTTGTTTTTTTGCGATTTTT
CCCCGGTGTGCGAGTCGTGCCCTGCCCCCATGGCCTTTCGAGAAGGAGTG
GCTTGGCTTCTACGCTcgttttttctttttcgtcccCGTATAAGATGCTG
TGGTCTTTTGTGATGTTTGCACGCGTCACATGTTTGAGAAAAATGATACC
TTCTCGGTGTATAGTCTTTTTTGGTACGTTCGCTTTGGCATTGTTTTTAA
AGCGTTGTCTACGCGACTTAGGCAGGAGGCCTACCCACATGGTATTTTTA
TCGACCGTTTCTGCAATTTAATGTACAATATACCACCACAATACAAGAAG
ACAGGACCCCTGTGGTAGGGCGTCGACGTTGTTAAGGCTTCATGTCTGCG
TACGATGATCCCGATGGGATGCTTTCTGGTGACAGCATGGAGgtgaacga
ggaagaggatgaggaggaagaggggggcgggcccgCACGGTCTGCTCTGG
AAGAAAGTATCAAGCGTAAGGGTATGAACAGCTACTACTACGCACACAGT
CGGAAAAACGGTAAGTGTGGCTGTGCATAGGTCCATGTAGCTCCTGTCGT
GCTTACGAAAGCGGGGTGATAGGTAGCacgcgggggggggccgtGCAAAG
ACTTTACTCCGAGCGGCCCCCCGGCATCACACCCATCCTCTCTCCTATTG
CCCATGGTCCAGACGCCCCGGCCTGGGACGGCCAAGCCACCCCGCGGTTG
ATGTCTAGCGTCGCCATGGCGCCGGACCCACAGGATCACCCTGAGCCGAT
ACGTACCTATGCCTGGAGTGACGGGGAGAAACATGTCAAGTGCGTCccga
aagggggg
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Coding sequence (CDS) from alignment at CM002470.1:124607..125564+

>rna6964 ID=rna6964|Name=rna6964|organism=Nannochloropsis gaditana|type=CDS|length=348bp|location=Sequence derived from alignment at CM002470.1:124607..125564+ (Nannochloropsis gaditana)
ATGCCTTGTCGTTACATTCCCTTGGACTGGGATGCAGAAGGGGTCAGGTC
TTCACGCTTTGTTTTTTTGCGATTTTTCCCCGGTGTGCGAGTCGTGCCCT
GCCCCCATGGCCTTTCGAGAAGGAGTGGCTTGGCTTCTACGCTcgttttt
tctttttcgtcccCGTATAAGATGCTGTGGTCTTTTGTGATGTTTGCACG
CGTCACATGTTTGAGAAAAATGATACCTTCTCGGTGTATAGTCTTTTTTG
GTACGTTCGCTTTGGCATTGTTTTTAAAGCGTTGTCTACGCGACTTAGGC
AGGAGGCCTACCCACATGGTATTTTTATCGACCGTTTCTGCAATTTAA
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Synonyms
Publications