rna6960, rna6960 (mRNA) Nannochloropsis gaditana

Overview
Namerna6960
Unique Namerna6960
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1107
Alignment locationCM002470.1:115618..117479 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100577g2.10012.mrna
Orig protein idgnl|cribi|Naga_100577g2.10012
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002470.1supercontigCM002470.1:115618..117479 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100577g2gene6726Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23729.1cds6944Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6960rna6960-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6960 ID=rna6960|Name=rna6960|organism=Nannochloropsis gaditana|type=mRNA|length=1107bp
TTCATATAGGTTGCAGCATGGCAGCAGAGCCGTCACAGGCGCGGGGCACG
GAACCCAGTGAGGCCTGCCTGGTCAAAAATAGCAGCAACCGCAGCGACCC
GGTGCGACACCCACCCACAGGCACCAATGGTTTCTTCTCCGCCCTCCGGG
GATGGTTCCATCCTTCCAACCCCTCAGATTCCACAGAGCTGGAATCAAAT
AGCAGCGGATGCCCGGTCCAAGGACGCGCTTCTCCCCCGTCATCCTCCCC
TGTCAATCCTTTAAACAACGAACGTCAATACTCCCAGGTCCCGCAGCCCT
CTCAAGCCGTTCCCCTCTCCACCTCCCGGGAAATCTCGTCCATCCCCAAA
TCAGATTTTACGCCCAAGCACCAACCGAAATGGGCAGGTGACAAATGGGT
GTACCCCTCGGAGCAACAATACTTCAACGCGATGAAATCGAAAGGCTTCG
ACCCGCTTCCCCAGGACGTGGGCATCATCCTGGCCATCCACAACGCCGTG
AACGAACAGGGCTGGCGGAAGGTGCTGGAATGGGAGGGAGGCTTGGGTAG
TACCCCGCCAAAGCTGAAACGCTTCATGGGCCGTCCGCAAGACCTCTCGC
CCAAGGCGGCGTGGCTCTGGATGTGCGGGTACAACAAGCCCTTCGACCGG
CACGATTGGGTGGTGGAGCGAGCGGACGGATCGGAAGTCCGTTACGTGAT
CGATTTTTACACGGGGCAGACGGACGTCAAGGACCCCAAGCCTGTCTCCA
TGCATTTGGATGTCCGCCCGGCCTTGGATTCCATGGCAGCGGTGCGCATG
CGGGTCGGACGGACAGTGGACGAGTGGAAAGAGGAGTGGTTTGGAAAGGA
GGGAGGGAAAGACCGCATGTTACCAGCTTGGACGGCAACATTTACAGCGA
TGGTGGGAGGGAGGGAAGGAGTGGGGGAGGGAGGGAAGGAGGGGGAGAGG
GGTGGCGTTGTACCAGGCGCTGGAGGGGCTTCAAAATAGAAGAGTGGGAC
ATGTGGCTTGTTGCTTTATCCTGGAAGAATCGAACGACATATTTCTTGAG
CCCCGGTGACACTCTGCAGGGGCATTTATGGTAAGGTTTTGCTTCGGTGC
CGTGCAA
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protein sequence of rna6960

>rna6960-protein ID=rna6960-protein|Name=rna6960|organism=Nannochloropsis gaditana|type=polypeptide|length=149bp
MVSKSSGSKSSSKGRRPSGRSMNDRGRYLPAHKKGGRYSHRNFVTPLHKM
PMVNTKKPSAGKINAGAVAARQQKAALAATTASQAPLRHSSRLTEDGNRR
RVKSSNKELFSATSVEHLGKRPKAATPSLVDNVRNVLASIVGRFTSSFA
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mRNA from alignment at CM002470.1:115618..117479-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6960 ID=rna6960|Name=rna6960|organism=Nannochloropsis gaditana|type=mRNA|length=1862bp|location=Sequence derived from alignment at CM002470.1:115618..117479- (Nannochloropsis gaditana)
CCCCCCCTCCCTCCTTTCCTCCCTCCCCCCCTCCCTCCCTCCCTCCTTCC
CTGAAAGCCCCCCCCAAAAAACATCCACCGGTCCCAAGACCGGAGACCGA
TCGAAGTGCTCATCCCTTTTACTCCTCCCCTGGGACTGTGTATTTTTTAA
CGTCCTCACTGTGAGGGTTCATGTAAATTTTGGTGATGGAGGAGGAAGGC
TGACGCGTACGTTATTTGCCGTCACTCGCCTCCTTCAACCAGGATCGAGA
ACTGCTGACCTAGTGCCCGCCTTTGCGGTCATGTATGCCACAATTTCATA
GTACCAATGTGCATGACATTCGTGGTCGTGTATATATTTTTGGGAATGAG
GGACGTAAAGGTTTATGGGTCATGGATGGTACTGGCATTTCCTCTTCCAT
GCACTTTCCGACACAACGGATTCTTCTGATCGCTTGGGCTGTCCAGACGT
TGCTCCTAACGTATGTGATCCCCGTACCATGGCAGGCGTCAAGCAAAGCG
TTCATTGATCACCACGTCTACTTGTTAAAAACGGTAAGGGCGTGTTGGTG
TGGGGCGGGAATTGGTCGGTTGGTTTGATAGGATGAAGATAAACGTGTTG
ATGTTCCATGTCGAGCGGATGATTCTATCGCATTATCAATTCGAGCCGTT
TAAAGACATTTTTGCACTCCGACACGCGTGTGCGAGTGTGGCAGGCTATG
AAAGCAATCGGTGTCACGAATAAGACCTTGTATATTATGAAATGGAAGGC
CATGTTGACTGCTCGTGCCCACGGCTCGAGCTTCAGCTCCAACGCCAACA
GTCGCATACAGTACACCTATACTTTCCATACAGGAAACATCTCACCTGTC
CATCCTCGATCAAACATCTGAATAGCAACGTTCCTGCCCTCACTCATCTT
GAATCTTGCCCTTCTGTCCTATCCTCCAGCGTCACAATGGTTTCCAAGAG
CAGTGGTAGCAAAAGCAGCAGCAAAGGGCGAAGGCCCTCCGGGAGGAGTA
TGAATGATCGAGGCCGCTACCTCCCTGCCCACAAGAAGGGTGGCCGTTAC
AGCCACCGCAATTTCGTGACCCCGCTCCACAAAATGCCCATGGTCAATAC
GAAAAAACCCAGTGCTGGGAAGATCAATGCCGGGGCCGTAGCTGCCAGGC
AACAAAAAGCTGCTCTCGCAGCGACAACAGCCTCGCAAGCACCCTTGCGA
CATTCGTCCCGGTTGACCGAGGATGGAAACCGGAGGCGGGTCAAGAGCAG
CAACAAGGAATTGTTTTCCGCGACCAGTGTGGAACATTTGGGGAAACGTC
CCAAGGCGGCCACCCCATCGCTGGTGGACAATGTGAGGAATGTCCTGGCC
TCGATCGTGGGTCGTTTTACAAGCAGTTTCGCCTGAGGGGAAGGTGGGAA
GGAGAGAAAGGGCTGGAAGAACATGACTGATGCTCTTTTGTACCGGGGAG
TGCCCTGCGGGATGAGAGGGAGTACAGGGGGGTGTATTATTCATGATGAC
TGAAGCAGAATATATGATTTGAATGCGGGACGACGGGTGCATTCTTTCCT
CGGCAAAGAGATAGGTGGTGTGGGCGGGTAATGAAGCGCAGAGAAGAGCA
TGTGTTGCTGTTTTTAAAAGGTATGAAGAATGGGGTGGGAGAAAGGGTCA
GAATTGAAGCAGATGGAAGAAGAACAAGCAGAGAAGCCCACAGATTTTAC
AACGGCTGAAGAATAAAGTGAGGGAGGTGGGGGCGTTCAAGAAATTAACG
AAATTAAGTAGACACGTGCCAAAGAGCACGTCGGAGACATTCTTACAGAG
GGGTTATCAACTCACTCCTCGTCAAGCGCACCGGACACACAGCCCCCAAA
GTAGTTTTTTTT
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Coding sequence (CDS) from alignment at CM002470.1:115618..117479-

>rna6960 ID=rna6960|Name=rna6960|organism=Nannochloropsis gaditana|type=CDS|length=450bp|location=Sequence derived from alignment at CM002470.1:115618..117479- (Nannochloropsis gaditana)
ATGGTTTCCAAGAGCAGTGGTAGCAAAAGCAGCAGCAAAGGGCGAAGGCC
CTCCGGGAGGAGTATGAATGATCGAGGCCGCTACCTCCCTGCCCACAAGA
AGGGTGGCCGTTACAGCCACCGCAATTTCGTGACCCCGCTCCACAAAATG
CCCATGGTCAATACGAAAAAACCCAGTGCTGGGAAGATCAATGCCGGGGC
CGTAGCTGCCAGGCAACAAAAAGCTGCTCTCGCAGCGACAACAGCCTCGC
AAGCACCCTTGCGACATTCGTCCCGGTTGACCGAGGATGGAAACCGGAGG
CGGGTCAAGAGCAGCAACAAGGAATTGTTTTCCGCGACCAGTGTGGAACA
TTTGGGGAAACGTCCCAAGGCGGCCACCCCATCGCTGGTGGACAATGTGA
GGAATGTCCTGGCCTCGATCGTGGGTCGTTTTACAAGCAGTTTCGCCTGA
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Synonyms
Publications