rna6957, rna6957 (mRNA) Nannochloropsis gaditana

Overview
Namerna6957
Unique Namerna6957
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length626
Alignment locationCM002470.1:103414..103710 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100734g1.9482.mrna
Orig protein idgnl|cribi|Naga_100734g1.9482
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002470.1supercontigCM002470.1:103414..103710 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100734g1gene6723Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6957rna6957-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23730.1cds6941Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6957 ID=rna6957|Name=rna6957|organism=Nannochloropsis gaditana|type=mRNA|length=626bp
CCCCCTATTTTTCTAAATAAACCTTGACAACAGTTATGGCGTCACAACCT
CGAAGCTCGTATGGTGAGGGTGACCTGTGCTTGAATCCCACGGTACCCGC
CCACAATCCTGGAGCCGACAGCAATTCCTCTCACGCAAATGGCCCTACCA
GTGCAGTGGCGAGAGCGCGTCGTAGGGGTGGGAAGAATTTAAGCTTGCCA
GAGCCTCCTCAACCTCAAGGATTCACTTGTTTTGCCTGTCGGGTAGCAAA
AGTCCGGTGCGACAAGAGCACCCCCTGCAATCGTTGTTCCCAGCTCGCGC
TGGAGTGCATCTCGCAAGGAAAAGGTCCGGGGCGACCGTCCAAAGCCTCG
ACGCCGCGCGCGAGGAAAGCAGGCACGAACCAACCTCGTCCCCCTCGTCT
TGGCGCGTTGCCCGAAAAACACCGAGATCCCCGCCTGCATGCTCTGGCAG
GCCAAGCCCGGGGTCCCCCGCCGCCCTCAGCGGCCTTCCCAATCCATCAT
CGCCCAAGTTGGCCGTTACACGAACCCGGTCCAACCCCGTACCTTCCTTC
TGGGCCGACGTCATCGGGGGAATCGCACCACCTTTATCGCCGACAGGATC
ACGGCGTCGAGGAGGGGAAGGAGGGC
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protein sequence of rna6957

>rna6957-protein ID=rna6957-protein|Name=rna6957|organism=Nannochloropsis gaditana|type=polypeptide|length=98bp
MGRERGGGRGRGRGGRREGGRGGHGVVLGVHGYALVGRTGSVFVRRGGGV
RREGGREEGREGGREGGTLFMFEDLVQEGRKGDGETPPSGQDQPIPMK
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mRNA from alignment at CM002470.1:103414..103710+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6957 ID=rna6957|Name=rna6957|organism=Nannochloropsis gaditana|type=mRNA|length=297bp|location=Sequence derived from alignment at CM002470.1:103414..103710+ (Nannochloropsis gaditana)
ATGGGaagagagcgggggggagggcgggggagagggcggggcggaaggcg
ggagggagggcgaggaggacacggtGTCGTCCTTGGCGTTCATGGATATG
CCCTCGTGGGAAGAACTGGATCGGTATTTgtacgaaggggaggaggcgtg
aggagggagggagggagggaggaagggagggagggagggagggagggagg
gactctGTTTATGTTTGAAGACTTGgttcaagaaggaaggaaaggcgacG
GCGAAACGCCCCCCTCTGGTCAGGACCAGCCAATTCCGATGAAATGA
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Coding sequence (CDS) from alignment at CM002470.1:103414..103710+

>rna6957 ID=rna6957|Name=rna6957|organism=Nannochloropsis gaditana|type=CDS|length=297bp|location=Sequence derived from alignment at CM002470.1:103414..103710+ (Nannochloropsis gaditana)
ATGGGaagagagcgggggggagggcgggggagagggcggggcggaaggcg
ggagggagggcgaggaggacacggtGTCGTCCTTGGCGTTCATGGATATG
CCCTCGTGGGAAGAACTGGATCGGTATTTgtacgaaggggaggaggcgtg
aggagggagggagggagggaggaagggagggagggagggagggagggagg
gactctGTTTATGTTTGAAGACTTGgttcaagaaggaaggaaaggcgacG
GCGAAACGCCCCCCTCTGGTCAGGACCAGCCAATTCCGATGAAATGA
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Synonyms
Publications