rna6955, rna6955 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6955
Unique Name	rna6955
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	804
Alignment location	CM002470.1:98026..100596 +

Link to JBrowse

Properties


Property Name	Value
Product	patched family protein
Orig transcript id	gnl\|cribi\|Naga_100891g2.2181.mrna
Orig protein id	gnl\|cribi\|Naga_100891g2.2181
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002470.1	supercontig	CM002470.1:98026..100596 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100891g2	gene6721	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6955	rna6955-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM23733.1	cds6939	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002470.1:98026..100596+
coding sequence from alignment at CM002470.1:98026..100596+

mRNA sequence

>rna6955 ID=rna6955|Name=rna6955|organism=Nannochloropsis gaditana|type=mRNA|length=804bp
TCTTATGCGTGCCAGAAATTTTATGTGCACACGAGCGTGTGACCTGAGAG
TCCACAGCTCACTACGCTGGTGGAACTGGCAGCGGAGTTTGGTGTGTTGG
GTTTTCCCCCAGTAGACACGATCTTGTGTCAGGATGACTGAGGCGTGGTA
CTGCCCGAGCGAGCGCATGACAATACCTTCGTCTAGCACCAACCTATGCA
GAAAAGCCCTTGTTGTGGCGTCTGTTTATCTGTTCATTGTATAGATGCCC
CTCTGATAGTTGAGGTAAAGTGTACTTCGACTTTGGTGCAGATTCCAAGA
CATTCGAAGCGCGTCGGCTCGAATCAGTCTCTCTCTTCACTCTACCTGCC
CAAGATTGGTCGCCACACTCGTTCATTTATGGCCCTCGGACCTCCATGTA
GCACAGGGGATCAGTCGAACAGCTTTTGCGGTTTGGCGTTGGAGGCATGG
GGTTGTTGAGTCCAAAGACGGGCGGATGTGCGCAAACCCGCGTCACATCA
ACTGCAGCAAGAAAGGCTCGGGGTCCAGATACATCCAGGTCGCTCGTTCC
AAGCTGCAGAAGAAGACATGCACCTCCTCCCTCCCTCCCTCCCTCCTTCC
TCCCCTTCCTCCTCCTCGTCCTCCTCCCCGCTCCCTTCCACGCTTTCGTC
TCCACTCCTCCTCACACCTACCGGTTTCCTGCCTTGGCGGCCCTCCCTTC
CTCCCTCCCTCCCTCCCTCCCTCCTTCCTCCCCTTCGCTCCAGCTTCCAA
ACTCCCCCCCCCCCAATCGATGGTGAGATGACTTCCTCTGTCCCACCTTC
CGCC

protein sequence of rna6955

>rna6955-protein ID=rna6955-protein|Name=rna6955|organism=Nannochloropsis gaditana|type=polypeptide|length=767bp
PSLPPSLPPSLPPTLPPSLPQGRCPDRLRSRFLLGSLGILVVLASLAVSL
GSWAFAGLHTTLIVWEVVPFLLLAIGVDNMFIITREFDRLQGLFPPSLPP
SLPPALPPSLLPSLSPSLDVLLGLTLSEVGPSMLAAATAETVAFLVGALT
GIPALQQFCLVAALAVTVDFVFQCTWFVAGLALDTRRQRARRMDGCVCWT
VGGGEGGGEGGRRWGVGLSSSGYHPLGNGGDQDEEAAEGGKGVDEKFWKP
PAAPPHVPHPPSAFWNRCMDKGYLPCLMSRAGKTAVGGLGLLLLILGLWG
ITTLELGLEPQLAAPSDFYLVDYYNTEFTLGEAGPPLYLVLKDLDYADVA
VRNALRNLSRQLSRLESYVQSPVYSWLDALEAYMDNENLPPDCPVPDPSQ
GFYANAKTFLSIPIETPCCQTAGICGEQYQTDVVFGPKNTGGSSREEGQR
KGRVSKPDASKSGGEEEEVVVASRFRLQLQPLRKERDFIDSYYYLRTYVR
EFAAAVPERYSGQGREGGTSAVVFPYSLYFVYYEQYTYIQGVALTNVCLA
LLAVGICTALLTGSVAIAGVVVGMVLWIMLGMVGVLAVWNRLTSGYLVRI
NAISVVNLVMATGLAVEFVVHIAGAYLTYPVGEGEEKRRNAAGNFRALSP
REKRAWHALSSMGASVLCGITLTKFVGIAVLAVAPSHLFRVYYFRMYVSL
IGVGAFVGLALLPVILAAYGPLPARKEGRDGGVYSNRTERQESRGAGRRK
RRRKRKDALDGVTEKED

mRNA from alignment at CM002470.1:98026..100596+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6955 ID=rna6955|Name=rna6955|organism=Nannochloropsis gaditana|type=mRNA|length=2571bp|location=Sequence derived from alignment at CM002470.1:98026..100596+ (Nannochloropsis gaditana)
ccctccctcccaccctccctccctccctccctccctcccaccctccctcc
ctccctcccccaaggCCGTTGCCCCGACCGCCTCCGctcccgtttcctcc
tcggctccCTCGGGATCCTTGTGGTCCTCGCCTCGCTCGCAGTCTCCTTA
GGTTCTTGGGCCTTCGCCGGCCTCCACACGACCTTGATCGTGTGGGAAGT
agtgcccttcctccttctcgccatTGGGGTCGACAACATGTTTATTATCA
CCCGGGAATTTGACCGACTCCAAGggctcttcccgccctccctcccgccc
tccctcccgcctgccctcccgccctccctcctgccctccctctcaccctc
cctcgacgtCTTGCTCGGCCTCACCTTGTCCGAGGTCGGGCCCTCCATGC
TGGCAGCCGCCACGGCGGAAACCGTCGCCTTTTTAGTGGGGGCATTGACG
GGGATCCCAGCCTTGCAACAATTTTGTCTGGTTGCGGCTTTGGCTGTGAC
TGTGGATTTTGTGTTCCAATGCACCTGGTTTGTGGCCGGACTGGCCTTGG
ATACCCGGAGACAGAGGGCTCGACGCATGGACGGCTGTGTCTGCTGGacc
gtgggcgggggggagggcgggggagagggcgggcgcaGGTGGGGCGTGGg
cctgtcttcctccgggtatcatCCTCtggggaatggaggggacCAGGACG
AAGAAGctgccgaaggagggaaaggcgtgGATGAAAAATTCTGGAAACCA
CcggcagcccccccccacgtgccacaccctccctcggcctTTTGGAACCG
GTGCATGGACAAGGGCTACCTTCCGTGCCTCATGTCTCGAGCGGGAAAAA
CCGCCGTCGGGGGTTTGGGTCTTCTTCTCTTGATTCTAGGCCTGTGGGGA
ATCACCACCTTGGAATTGGGCTTGGAGCCGCAGTTGGCGGCGCCATCGGA
CTTTTATTTGGTCGATTATTACAACACCGAATTCACGCTAGGGGAGGCTG
GCCCCCCTTTGTACCTGGTGTTGAAAGACTTGGACTATGCAGACGTAGCC
GTCCGCAACGCGCTCCGGAATTTGAGTCGGCAACTCTCACGCTTGGAATC
CTACGTACAAAGCCCTGTGTATTCTTGGCTTGATGCGTTGGAGGCGTATA
TGGACAACGAGAACCTCCCGCCAGATTGCCCCGTGCCCGATCCGAGCCAA
GGCTTTTATGCGAACGCCAAGACTTTCTTGAGCATCCCCATTGAGACCCC
GTGTTGTCAAACGGCGGGCATTTGTGGGGAACAGTACCAGACAGACGTGG
TTTTTGGGCCGAAAAACACCGGGGGGTCtagccgggaggaaggccagcgC
AAGGGGAGGGTTTCAAAGCCCGACGCGTCGAAGtcagggggagaggagga
ggaagtggtggtggcctcccGTTTCCGACTCCAATTGCAGCCGTTGCGGA
AGGAGCGGGACTTTATCGACAGTTACTACTATCTGCGTACGTACGTGAGA
GAGTTTGCCGCCGCGGTGCCGGAACGTTACTcgggccaggggagggaggg
agggaccagCGCGGTCGTCTTTCCCTACTCCCTGTATTTTGTCTATTACG
AGCAGTACACCTACATCCAAGGCGTGGCGTTGACCAATGTGTGCCTGGCG
CTCTTGGCGGTGGGGATTTGTACGGCCCTCTTGACTGGCAGCGTCGCCAT
CGCCGGGGTGGTGGTTGGGATGGTGCTGTGGATCATGCTGGGAATGGTGG
GAGTTCTGGCCGTCTGGAACCGACTTACTTCCGGGTATCTGGTGCGGATC
AACGCGATCTCGGTCGTCAATCTGGTGATGGCTACGGGGCTGGCCGTTGA
ATTTGTGGTCCATATCGCCGGGGCCTACCTGACGTACCCcgtgggagaag
gggaggaaaagcgccGGAATGCAGCCGGCAATTTTCGGGCGCTGTCTCCC
CGTGAAAAGCGGGCGTGGCATGCCTTGTCTTCCATGGGCGCCTCCGTGTT
GTGCGGCATCACGCTGACCAAGTTCGTGGGGATCGCTGTGCTGGCCGTCG
CACCTTCCCACCTGTTTCGGGTGTATTATTTTAGGATGTACGTGTCTTTG
ATCGGCGTCGGTGCCTTCGTGGGGTTGGCGCTCTTACCCGTGATCTTAGC
CGCTTATGGCCCTTTGCCCGCAAGAAAAGAGGGTAGAGACGGAGGTGTGT
ATAGCAATAGAACAGAAAGGCAAGAAAGCAGGGGGGCTGGCAGGCggaag
agacggaggaagaggaaagatgcACTTGACGGCGTCACAGAGAAGGAAGA
TTAAAGCATGTAGACTGGgattggaaagaaagcaCGACCCTCACACACAT
TTCCTTGTCTCTGAAGTATAATTTTTAATTATTCGGCGCGAAAAAAGAAC
GATTCGTGCGACATACTATATTTCACGAGCCCTGATAGGGTATTACTGCA
TCCATACAAGGCGGCCTGGGGAATAAAGTGTATGCATGGCGCAAATTCCC
CGATAATAGGCAGGATGACCCGAGACGGCATTCGGAGATATCACAAGATA
CTATTCTCTACTCTTCTTTTC

Coding sequence (CDS) from alignment at CM002470.1:98026..100596+

>rna6955 ID=rna6955|Name=rna6955|organism=Nannochloropsis gaditana|type=CDS|length=2304bp|location=Sequence derived from alignment at CM002470.1:98026..100596+ (Nannochloropsis gaditana)
ccctccctcccaccctccctccctccctccctccctcccaccctccctcc
ctccctcccccaaggCCGTTGCCCCGACCGCCTCCGctcccgtttcctcc
tcggctccCTCGGGATCCTTGTGGTCCTCGCCTCGCTCGCAGTCTCCTTA
GGTTCTTGGGCCTTCGCCGGCCTCCACACGACCTTGATCGTGTGGGAAGT
agtgcccttcctccttctcgccatTGGGGTCGACAACATGTTTATTATCA
CCCGGGAATTTGACCGACTCCAAGggctcttcccgccctccctcccgccc
tccctcccgcctgccctcccgccctccctcctgccctccctctcaccctc
cctcgacgtCTTGCTCGGCCTCACCTTGTCCGAGGTCGGGCCCTCCATGC
TGGCAGCCGCCACGGCGGAAACCGTCGCCTTTTTAGTGGGGGCATTGACG
GGGATCCCAGCCTTGCAACAATTTTGTCTGGTTGCGGCTTTGGCTGTGAC
TGTGGATTTTGTGTTCCAATGCACCTGGTTTGTGGCCGGACTGGCCTTGG
ATACCCGGAGACAGAGGGCTCGACGCATGGACGGCTGTGTCTGCTGGacc
gtgggcgggggggagggcgggggagagggcgggcgcaGGTGGGGCGTGGg
cctgtcttcctccgggtatcatCCTCtggggaatggaggggacCAGGACG
AAGAAGctgccgaaggagggaaaggcgtgGATGAAAAATTCTGGAAACCA
CcggcagcccccccccacgtgccacaccctccctcggcctTTTGGAACCG
GTGCATGGACAAGGGCTACCTTCCGTGCCTCATGTCTCGAGCGGGAAAAA
CCGCCGTCGGGGGTTTGGGTCTTCTTCTCTTGATTCTAGGCCTGTGGGGA
ATCACCACCTTGGAATTGGGCTTGGAGCCGCAGTTGGCGGCGCCATCGGA
CTTTTATTTGGTCGATTATTACAACACCGAATTCACGCTAGGGGAGGCTG
GCCCCCCTTTGTACCTGGTGTTGAAAGACTTGGACTATGCAGACGTAGCC
GTCCGCAACGCGCTCCGGAATTTGAGTCGGCAACTCTCACGCTTGGAATC
CTACGTACAAAGCCCTGTGTATTCTTGGCTTGATGCGTTGGAGGCGTATA
TGGACAACGAGAACCTCCCGCCAGATTGCCCCGTGCCCGATCCGAGCCAA
GGCTTTTATGCGAACGCCAAGACTTTCTTGAGCATCCCCATTGAGACCCC
GTGTTGTCAAACGGCGGGCATTTGTGGGGAACAGTACCAGACAGACGTGG
TTTTTGGGCCGAAAAACACCGGGGGGTCtagccgggaggaaggccagcgC
AAGGGGAGGGTTTCAAAGCCCGACGCGTCGAAGtcagggggagaggagga
ggaagtggtggtggcctcccGTTTCCGACTCCAATTGCAGCCGTTGCGGA
AGGAGCGGGACTTTATCGACAGTTACTACTATCTGCGTACGTACGTGAGA
GAGTTTGCCGCCGCGGTGCCGGAACGTTACTcgggccaggggagggaggg
agggaccagCGCGGTCGTCTTTCCCTACTCCCTGTATTTTGTCTATTACG
AGCAGTACACCTACATCCAAGGCGTGGCGTTGACCAATGTGTGCCTGGCG
CTCTTGGCGGTGGGGATTTGTACGGCCCTCTTGACTGGCAGCGTCGCCAT
CGCCGGGGTGGTGGTTGGGATGGTGCTGTGGATCATGCTGGGAATGGTGG
GAGTTCTGGCCGTCTGGAACCGACTTACTTCCGGGTATCTGGTGCGGATC
AACGCGATCTCGGTCGTCAATCTGGTGATGGCTACGGGGCTGGCCGTTGA
ATTTGTGGTCCATATCGCCGGGGCCTACCTGACGTACCCcgtgggagaag
gggaggaaaagcgccGGAATGCAGCCGGCAATTTTCGGGCGCTGTCTCCC
CGTGAAAAGCGGGCGTGGCATGCCTTGTCTTCCATGGGCGCCTCCGTGTT
GTGCGGCATCACGCTGACCAAGTTCGTGGGGATCGCTGTGCTGGCCGTCG
CACCTTCCCACCTGTTTCGGGTGTATTATTTTAGGATGTACGTGTCTTTG
ATCGGCGTCGGTGCCTTCGTGGGGTTGGCGCTCTTACCCGTGATCTTAGC
CGCTTATGGCCCTTTGCCCGCAAGAAAAGAGGGTAGAGACGGAGGTGTGT
ATAGCAATAGAACAGAAAGGCAAGAAAGCAGGGGGGCTGGCAGGCggaag
agacggaggaagaggaaagatgcACTTGACGGCGTCACAGAGAAGGAAGA
TTAA

Synonyms

Publications