rna6951, rna6951 (mRNA) Nannochloropsis gaditana

Overview
Namerna6951
Unique Namerna6951
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2437
Alignment locationCM002470.1:88447..88936 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100606g1.6633.mrna
Orig protein idgnl|cribi|Naga_100606g1.6633
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002470.1supercontigCM002470.1:88447..88936 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100606g1gene6717Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23738.1cds6935Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6951rna6951-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6951 ID=rna6951|Name=rna6951|organism=Nannochloropsis gaditana|type=mRNA|length=2437bp
GATGATGGTATTCAAAATTCGTGGACTGCGTAACATCACTGCAGGCCATT
ATGAAATCGATACAACTCACCCGCCTTCCCCCTTCCTTCTTTTCTCGTCC
TCTCATGCTTCCATTACCGCTCAGCCGTTGAATGGGTTCAAATCCTTCAA
CGGCAAATCGACCGTTGCCACCAGGAAAGCCTCGCGGCCACCTTAACACC
GACCGCCCCTGCCTACCAGCTCTCCTCCAGCCTCTCCCTTTCCGATTCTT
CCCGCGCACGTTGCCCTTTCCTTAACTCGCTCCAAGGCCGGGCCCGGTCC
CGGCGGGAGAAAATCGTCGTGTACATGTATGCCTCGGAAGCCCGCTACCT
AGAGTATCTACGGCAAGCGCTGCAAGTGTTGGTGAAGCCATTGAGCGATG
CGGCCAGAGGGATCAAATTGACCGGAGGAGACCCTCCTCCCGCCCACGAT
CTTTTCCAAACCGACACCCACCTCCTCTCCCAGCTGACCGAGGGCCGAAA
CCACACGCTGCGTCGAAAACAGCATGCCAACGCCTTGCGTACGGCGGATA
TGTGGGTCTTTTTGAAGATCTATCCCCAGTTAGAAATTCTCACCGGTCAT
GTCACCGCAGAATTGGAAAAAGGGCTCCGTCGGGCCCTGATCCCTCCGGG
GGAGGGGGCCAATCCAACGGCGGTTCAAATTCAAATTCAAATTGAAAACC
AGGAACCCCGCTCCCGCCAGTCGGAAGCGGAGGGCGGGCCCGTCTTGTGC
GTGGGTGGAATTTTCCTGGGGCTGAAGGCTTTGATGAGTACCTACAATGC
CTACGCTGCCGTCTGGGAGGAGGTTACGTCCGTGCTGGGACGGAAAGAAT
TCGCCGAATTTAAGGAGGCCGTCAGCGGGCGCCTCTTGCCGTTAACGTTG
TCGCAGCACTTGCACGCGCCGTTTGACGCCATGCACCGGTATTCCGTGCA
ATTGCAGGCGTTGTTGGATGAAACACCCCGGCAGCATCCGGATTATGAGT
CCATCTCCTCCGCCGTCACCTTGGTCGAGGCTACCTTAGCCCGGATGCAG
CAGACACAGGAGGATACCCGGATGTATCACCAAATTCAGCGAATTAAAGC
CTCGGTCCTGGCAATGAAAGGCGGGGACGACCGGGGGCAGGAAATATGGG
CCAATTTGATCTCGAGTGAACGGAAGCTTTTAAAAACAGGGAAGCTTTAC
AAAGCGTGTCGGCACCACAACAAGGAGTTTCAGTTCTGGTTGTTTGACAA
CTGCCTCGCCTACGCCGTCCCGCTTGGGCAAGGGGGAAGGGGGGAGGGTC
GCTATCGCTTGAACCGTGTCCTCCTCTTAAGGCATTGTCAAGCCCGAGCC
TCCCGGGAAGACCCTCGGGCTTTGGATATCTTGTCCCCCACGAAATCCTT
CGCCCTGCATTGCCCCTCCGTCTCAGAAGCCCAAGGCTGGCTCCTAGCCG
CCCGCACGGCCATCCACATAGCCCAGCAAGCTTTCCCCCCCCCCACCCCC
ACGACGGATCACACCACCCGGCGCCCATGTGGGAACAGGCAGCGGAGGTT
GTTTCCTGCTTCATTTGTCAGCAAACCTTTGGCACCTCCAGCCTTCTGGG
CCCTCGGAAACGCCACTGTCGAAGCTGCGGGCGGGTGGTGTGCGCTGCCT
GTGCCGGGTATCATTTGCGGGTGCCCCGCCTGCACCCGACGCAGAAACAA
CGGGTCTGTGTCCGTTGCTTTCAACGGCATGGGAAGGACTCGCCCAGTGA
AAAAGACGTTTCTTGGCGGTTCGACCAGGGGGGGCAGCTGCCTCGGGGAA
TGAACGGTGATTTTCGGCCCCATGACCCCGCCACACCGGTTTCCATGGAA
GCTTCTGGAAACCAAGCCGTCCCCTTGGCGGCCGCATCTCCTCCCACGAA
CGCCCCGCTTGATTCCCTGGCGACATCGACGCCCGTCGTCGAAGCTTCTA
GAACAGAAGCTCCATCCCCCGAACCTCCTTGCCTGGGAATGACCGAAGGG
GCTTGTCCACGATCCCTGCCCACCCTGAGCCAGTCCCATACTGCAGTCAC
CTTAACAAAACCTCCACTTGCCCCTCCCTCCGTCGTCGCCACCTTAGCTG
CCACCATGCCAGACCGACGACCCACCCCCCTCCTTCCCTCCCTCCCCCCC
CCCAAACCGGCTCGCCGCTTCCGGAACCCCCCCTGCGCCGTGGCACCTTC
CTTACCTTCGTCCCCGCCCCTCCCTCCGCCTTCTCTTCCAGGATACCCGG
ATGTAGCCTTTATGCTTCCTCCTGGCCCGGTATCTGGTCCGCCACCCGCC
TCCCTACCTTCCCCCTCTGGCACGGCCGCCCTCCCTCCTTCCCTCCTCAT
CACCCCACCCGGCTTCTCCTCAACCTCCCTGTCCACGGAGGCGACGGAAG
GGTGCCGGAGAGAAGGCAAACCCCCCGAATTTCCCCG
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protein sequence of rna6951

>rna6951-protein ID=rna6951-protein|Name=rna6951|organism=Nannochloropsis gaditana|type=polypeptide|length=123bp
MDSPPLLLLLPFHVATYPPPPPPPPPIRSLGAGAPPCPFPGRSGSLPKVA
GTACLQGKPPPLRGARPLPSFLPPSLPPSFLHFPSMLPCPPLRILGEIRG
VCLLSGTLPSPPWTGRLRRSRVG
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mRNA from alignment at CM002470.1:88447..88936-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6951 ID=rna6951|Name=rna6951|organism=Nannochloropsis gaditana|type=mRNA|length=490bp|location=Sequence derived from alignment at CM002470.1:88447..88936- (Nannochloropsis gaditana)
ATGGACTCTCCTCCCCTTCTCCTCCTCCTCCCCTTCCACGTCGCAACCTA
CCCTCCTCCTCCTCCTCCTCCTCCCCCGATCCGATCCTTGGGCGCCGGGG
CCCCTCCTTGCCCTTTTCCTGGGCGGAGCGGATCTCTTCCTAAGGTTGCA
GGGACGGCATGCCTGCAGGGGAAGCCCCCGCCCCTGAGGGGGGCCCGACC
CCTCCCTTCCTTCCTCCCTCCCTCCCTCCCTCCATCCTTCCTCCACTTTC
CCTCGATGCTGCCTTGTCCCCCCCTGCGAATTCTCGGGGAAATTCGGGGG
GTTTGCCTTCTCTCCGGCACCCTTCCGTCGCCTCCGTGGACAGGGAGGTT
GAGGAGAAGCCGGGTGGGGTGATGAGGAGGGAAGGAGGGAGGGCGGCCGT
GCCAGAGGGGGAAGGTAGGGAGGCGGGTGGCGGACCAGATACCGGGCCAG
GAGGAAGCATAAAGGCTACATCCGGGTATCCTGGAAGAGA
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Coding sequence (CDS) from alignment at CM002470.1:88447..88936-

>rna6951 ID=rna6951|Name=rna6951|organism=Nannochloropsis gaditana|type=CDS|length=372bp|location=Sequence derived from alignment at CM002470.1:88447..88936- (Nannochloropsis gaditana)
ATGGACTCTCCTCCCCTTCTCCTCCTCCTCCCCTTCCACGTCGCAACCTA
CCCTCCTCCTCCTCCTCCTCCTCCCCCGATCCGATCCTTGGGCGCCGGGG
CCCCTCCTTGCCCTTTTCCTGGGCGGAGCGGATCTCTTCCTAAGGTTGCA
GGGACGGCATGCCTGCAGGGGAAGCCCCCGCCCCTGAGGGGGGCCCGACC
CCTCCCTTCCTTCCTCCCTCCCTCCCTCCCTCCATCCTTCCTCCACTTTC
CCTCGATGCTGCCTTGTCCCCCCCTGCGAATTCTCGGGGAAATTCGGGGG
GTTTGCCTTCTCTCCGGCACCCTTCCGTCGCCTCCGTGGACAGGGAGGTT
GAGGAGAAGCCGGGTGGGGTGA
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Synonyms
Publications