rna6949, rna6949 (mRNA) Nannochloropsis gaditana

Overview
Namerna6949
Unique Namerna6949
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length794
Alignment locationCM002470.1:84239..85630 +

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100606g3.6635.mrna
Orig protein idgnl|cribi|Naga_100606g3.6635
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002470.1supercontigCM002470.1:84239..85630 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100606g3gene6715Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6949rna6949-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23740.1cds6933Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6949 ID=rna6949|Name=rna6949|organism=Nannochloropsis gaditana|type=mRNA|length=794bp
CCCCCTCCTCCCCTCCTCCCTCCTCCTCCCCCAGCGCCCCTCCTTCTCCC
TCAACACTTCCTTCCCAGCCCTCCCCTCCCTCCCTCCTTCCCTCCCTCCC
CTCCCTTGACCACCTCTCCCCCGGCACCTCCCTCCTCCTCACCCAAGTCC
CTCCCCACCACATGTCTATCGCGCGGGAACGCAACCTCCCCCCTACCTCC
CCCCCCCCTCCCTTCCCTCGACCACCTCTCCCCCGGCACTTCCCTCCTCC
TTACCCAAGTCCCTCCACACCACCTCTCGATTGCTTGGGAGCAGGAAAAC
GCGACCTCCCCCCGCCCCTCCCTCCCTTCCTCCCGCCCCATCGCTGCCAT
CCCTCCTCCCCCCGCCCTCGCTTCGGGCCCGGAGGGAGCGAGAACGCCCG
AGGGAGTAACGGTCGGAGAGGACGTAACGGCTGAAAGGGAAGTATGGATT
GGGAGGAAGGAGGAACCTACCTCAGAGGCCCTTCGGGCCCCCCTCCCTCC
CTCCCTCCCTCTATCCCTTCCTCCGTCGGTACCTGTGGACCAGAGCAGTT
ATGCGGACCGTTTCACGGGTCTAATTGGAGCGGAAGGGATACTGGAGGAG
GTTGAGACGAGGCAGGAGGGAGGAGGGGAGCGAGGGCGGGAGGGAGGACG
GGAGGGAGGGCGGGGTGTGGCCCTCTTTTGCCGGGAAGGAGAAGTTGATG
GAGGATTGGGTGGGCTCGGAGAGAGAGTATGTGGGGCAGTTGGGAGCCTT
TAAGGAGAAGGTAATTGCCGCGATCCATGTGAGGGATACGGAGG
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protein sequence of rna6949

>rna6949-protein ID=rna6949-protein|Name=rna6949|organism=Nannochloropsis gaditana|type=polypeptide|length=162bp
PPPPPPLPPPPPPLLPLPLRPPPPPPPLPPPPPLPPLSPPPPPPLPPPPP
PPSSPPSRCSPIQKITVNQETKHTTEGTVYAHLFNDALLYSARLLPRTFK
LRRIINLKEVYGEPRIVDGSGCEVKVTTKQREYRLRFPCKGLGRGREERR
RVRGQARARGIV
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mRNA from alignment at CM002470.1:84239..85630+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6949 ID=rna6949|Name=rna6949|organism=Nannochloropsis gaditana|type=mRNA|length=1392bp|location=Sequence derived from alignment at CM002470.1:84239..85630+ (Nannochloropsis gaditana)
cctcctcctcctcctcctcttcctccccctcctcctcctcttcttcctct
ccctcttcgtcctcctccccctcctcctcctcttcctcctcctcctcctc
ttcctcctctctcccctcctcctcctcctcctctccctcctcctcctcct
cctccttcttcccctccttctcgctgcAGCCCCATCCAGAAAATCACCGT
CAACCAGGAGACGAAGCACACCACGGAAGGAACTGTCTACGCTCATCTCT
TCAACGATGCCCTCCTCTACTCggctcgcctccttccccgtacGTTTAAG
GTAGGTGCAACCCCCAAGATCCCCGCATCCAACATTCGCTGGGGATGGCC
TTCTCTGGAGAATTTTTTATTTTATTTTGGTGTCTTTGGGGACTCTATGG
GCTTCTTTCTTGCCTAAATTTTTAATGCGggctcttttttcctttgacGG
CCTGCCTTCTCATTGTTGATGTGGCGTGCGCGCACAATCTATGAAATAAC
TTGGTTCCATATTCCATCTTCGTTTCCttgtctttctctcccttttcccc
cattccCCTCCTATTTTTTTGATGGGGCTTTTTTCCGGCTtgttctctcc
ccctcttatGCCGGATATCGTCTCGTACATGACACGGAAGAGTGCCCgaa
gcttcctccacgtccatgtaTACGCACAATTAATTTAGTTACactccctt
tgccctcctccttgtcctttttTGCTTTTGTGGTGGCCGACCTTGATGGc
tttctgtctctttccACATCCGAAAGGAGGTAGTATTATTCACTCTCGGT
ACCACATTTTCACGCCTCGGTATAATTCGGATTTCAAGGAACTGCATCCT
TTTAAATATATATTTTAATGGGTGTGTGCCCAATATtaccttcccctttt
cctttcgacGTTCGACGGTCGTTCATGTTGATGTCCTTCCATACTTCTCA
CTCTTTCCCTGGTGTCCTTCCATACTCCtcactctttccccctcagCTTC
GTCGGATCATCAACTTGAAGGAAGTCTACGGAGAGCCGCGCATCGTTGAT
GGATCCGGATGTGAAGTTAAGGTGACGACCAAACAGCGAGAGTACCGGCT
ACGGTTTCCATGTAaggggctggggagggggagggaagaaaggaggaggg
tgagaggacAGGCACGTGCCAGAGGGATTGTATGACTGTACGGTTGTATA
TATGTATGCATTATGTGATAGTGTGTGTATTATATGATATATATTTATAT
ATAATATATATATCAATAGTAGAGGGGTATATGTCTGTACGTTTGTATGT
ATATGTGTATTATGTGATCTATCTATGTATAGATAGATCTGTATCTATAC
GATACATATGACAACGGAACAATGGCTCGGGGAATTCCCTCC
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Coding sequence (CDS) from alignment at CM002470.1:84239..85630+

>rna6949 ID=rna6949|Name=rna6949|organism=Nannochloropsis gaditana|type=CDS|length=978bp|location=Sequence derived from alignment at CM002470.1:84239..85630+ (Nannochloropsis gaditana)
cctcctcctcctcctcctcttcctccccctcctcctcctcttcttcctct
ccctcttcgtcctcctccccctcctcctcctcttcctcctcctcctcctc
ttcctcctctctcccctcctcctcctcctcctctccctcctcctcctcct
cctccttcttcccctccttctcgctgcAGCCCCATCCAGAAAATCACCGT
CAACCAGGAGACGAAGCACACCACGGAAGGAACTGTCTACGCTCATCTCT
TCAACGATGCCCTCCTCTACTCggctcgcctccttccccgtacGTTTAAG
CTTCGTCGGATCATCAACTTGAAGGAAGTCTACGGAGAGCCGCGCATCGT
TGATGGATCCGGATGTGAAGTTAAGGTGACGACCAAACAGCGAGAGTACC
GGCTACGGTTTCCATGTAaggggctggggagggggagggaagaaaggagg
agggtgagaggacAGGCACGTGCCAGAGGGATTGTATGAcctcctcctcc
tcctcctcttcctccccctcctcctcctcttcttcctctccctcttcgtc
ctcctccccctcctcctcctcttcctcctcctcctcctcttcctcctctc
tcccctcctcctcctcctcctctccctcctcctcctcctcctccttcttc
ccctccttctcgctgcAGCCCCATCCAGAAAATCACCGTCAACCAGGAGA
CGAAGCACACCACGGAAGGAACTGTCTACGCTCATCTCTTCAACGATGCC
CTCCTCTACTCggctcgcctccttccccgtacGTTTAAGCTTCGTCGGAT
CATCAACTTGAAGGAAGTCTACGGAGAGCCGCGCATCGTTGATGGATCCG
GATGTGAAGTTAAGGTGACGACCAAACAGCGAGAGTACCGGCTACGGTTT
CCATGTAaggggctggggagggggagggaagaaaggaggagggtgagagg
acAGGCACGTGCCAGAGGGATTGTATGA
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Synonyms
Publications