rna6948, rna6948 (mRNA) Nannochloropsis gaditana

Overview
Namerna6948
Unique Namerna6948
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length249
Alignment locationCM002470.1:83030..83823 +

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_102563g1.4246.mrna
Orig protein idgnl|cribi|Naga_102563g1.4246
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002470.1supercontigCM002470.1:83030..83823 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_102563g1gene6714Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6948rna6948-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23741.1cds6932Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6948 ID=rna6948|Name=rna6948|organism=Nannochloropsis gaditana|type=mRNA|length=249bp
ATGCGCTGTCAAGACACACTTCATCGAAGGTGGCGATGCTGGAGCTCGAG
GGGACAAAATCAATGCTTTCATCAAAGCCGTCCTGTAAGCCCGCTCAGCG
GCAGGTGTGTTGCTCTCCTCCATGTTGCCTTGCTCTCGACGCGGGAAGGA
GGTGGAAAAGAGAAAGGAAGGGTTAGAAAGGAAATCTTTCAGAGAGGAGG
CGTAGATGGTGTCCAGCTAGGAAAGTCTAGGGAGATAACCTTTGGATAG
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protein sequence of rna6948

>rna6948-protein ID=rna6948-protein|Name=rna6948|organism=Nannochloropsis gaditana|type=polypeptide|length=250bp
PPPPLLPPPPPAPLLLPQHFLPSPPLPPSFPPSPPLTTSPPAPPSSSPKS
LPTTCLSRGNATSPLPPPPLPSLDHLSPGTSLLLTQVPPHHLSIAWEQEN
ATSPRPSLPSSRPIAAIPPPPALASGPEGARTPEGVTVGEDVTAEREVWI
GRKEEPTSEALRAPLPPSLPLSLPPSVPVDQSSYADRFTGLIGAEGILEE
VETRQEGGGERGREGGREGGRGVALFCREGEVDGGLGGLGERVCGAVGSL
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mRNA from alignment at CM002470.1:83030..83823+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6948 ID=rna6948|Name=rna6948|organism=Nannochloropsis gaditana|type=mRNA|length=794bp|location=Sequence derived from alignment at CM002470.1:83030..83823+ (Nannochloropsis gaditana)
ccccctcctcccctcctccctcctcctcccccagcgcccctccttctccc
tcaacacttccttcccagccctcccctccctccctccttccctccctccc
ctcccttgaccacctctcccccggcacctccctcctcctcacccaagtcc
ctccccaccacatGTCTATCGCGCGGGAAcgcaacctcccccctacctcc
cccccccctcccttccctcgaccacctctcccccggcacttccctcctcc
ttacccAAGTCCCTCCACACCACCTCTCGATTGCTTGGGAGCAGGAAAAc
gcgacctccccccgcccctccctcccttcctcccgccccatcgctgccat
ccctcctccccccgccctcgcttcGGGCccggagggagcgagaacGCCCG
AGGGAGTAACGGTCGGAGAGGACGTAACGGCTGAAAGGGAAGTATGgatt
gggaggaaggaggaaccTACCTCAGAGGCCCTTcgggcccccctccctcc
ctccctccctctatcccttcctccgtcggtACCTGTGGACCAGAGCAGTT
ATGCGGACCGTTTCACGGGTCTAATTGGAGCGGAAGGGATactggaggag
gttgagacgaggcaggagggaggaggggagcgagggcgggagggaggacg
ggagggagggcggggtgtgGCCCTCTTTtgccgggaaggagaagttGATG
GAGGATTGGGTGGGCTCGGAGAGAGAGTATGTGGGGCAGTTGGGAGCCTT
TAAGGAGAAGGTAATTGCCGCGATCCATGTGAGGGATACGGAGG
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Coding sequence (CDS) from alignment at CM002470.1:83030..83823+

>rna6948 ID=rna6948|Name=rna6948|organism=Nannochloropsis gaditana|type=CDS|length=753bp|location=Sequence derived from alignment at CM002470.1:83030..83823+ (Nannochloropsis gaditana)
ccccctcctcccctcctccctcctcctcccccagcgcccctccttctccc
tcaacacttccttcccagccctcccctccctccctccttccctccctccc
ctcccttgaccacctctcccccggcacctccctcctcctcacccaagtcc
ctccccaccacatGTCTATCGCGCGGGAAcgcaacctcccccctacctcc
cccccccctcccttccctcgaccacctctcccccggcacttccctcctcc
ttacccAAGTCCCTCCACACCACCTCTCGATTGCTTGGGAGCAGGAAAAc
gcgacctccccccgcccctccctcccttcctcccgccccatcgctgccat
ccctcctccccccgccctcgcttcGGGCccggagggagcgagaacGCCCG
AGGGAGTAACGGTCGGAGAGGACGTAACGGCTGAAAGGGAAGTATGgatt
gggaggaaggaggaaccTACCTCAGAGGCCCTTcgggcccccctccctcc
ctccctccctctatcccttcctccgtcggtACCTGTGGACCAGAGCAGTT
ATGCGGACCGTTTCACGGGTCTAATTGGAGCGGAAGGGATactggaggag
gttgagacgaggcaggagggaggaggggagcgagggcgggagggaggacg
ggagggagggcggggtgtgGCCCTCTTTtgccgggaaggagaagttGATG
GAGGATTGGGTGGGCTCGGAGAGAGAGTATGTGGGGCAGTTGGGAGCCTT
TAA
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Synonyms
Publications