rna6947, rna6947 (mRNA) Nannochloropsis gaditana

Overview
Namerna6947
Unique Namerna6947
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length605
Alignment locationCM002470.1:81197..81510 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101761g1.7582.mrna
Orig protein idgnl|cribi|Naga_101761g1.7582
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002470.1supercontigCM002470.1:81197..81510 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101761g1gene6713Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6947rna6947-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23742.1cds6931Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6947 ID=rna6947|Name=rna6947|organism=Nannochloropsis gaditana|type=mRNA|length=605bp
ATGATTACCGCCGCCACGGGTACAGTGTCCCGCACGATAGTTGACCTTGG
CGCGCACAGTGAGCTTGCGAAGCTGCTGTGTGTGTCATTGGCTGTGCTCT
ATGGACATAGCCGGCGGGGCTTTAATGGCTGTAGAAGCCTGGTACTCGCC
CCCCTTTCTTCCTCCCTACCATCGCATTTTCCTTCCATCTTTAGAAGGGC
TCATCACTCACCCCTTTCTGTTCCTATTCTTTCTGCCGGCCATTCAATAG
CAGCAATGGCCATCCCCGAGTCCATCCTCAAAAAACGTCGCACGCAAGAA
GCGCTTTTGGCCACAAAGCTTGCTGAGAAGGCAGCAGCGAAGAAGGCCGC
CAGGGCGAAGCGTGGAGAGACAGTTAAGCGGGCAGAAAAATACATGAAGG
AGTACAAGAAGGTAGGCAGGGAGGGAGGGTGGAGGAATAGAGGGAGGAAA
GGAGCAAGGGGTGCAATGCGCGGAAGACAGCGCGAACAGAGGAGAGGGTT
CGAGGGAGAAAGCGCGTGGCATGTGTGACCATGCAATCATGGACCTGAAA
AGCATTGAGCAACATGCGACCTGCGTCGGACATCGAATAACGACCCCATC
TTCCC
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protein sequence of rna6947

>rna6947-protein ID=rna6947-protein|Name=rna6947|organism=Nannochloropsis gaditana|type=polypeptide|length=82bp
MRCQDTLHRRWRCWSSRGQNQCFHQSRPVSPLSGRCVALLHVALLSTREG
GGKEKGRVRKEIFQRGGVDGVQLGKSREITFG
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mRNA from alignment at CM002470.1:81197..81510+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6947 ID=rna6947|Name=rna6947|organism=Nannochloropsis gaditana|type=mRNA|length=314bp|location=Sequence derived from alignment at CM002470.1:81197..81510+ (Nannochloropsis gaditana)
ATGCGCTGTCGTAGGATAGAAGCTCATGCATCttttgtcctcccctcctt
tcctcagGGCGGTTACAAGGATAAGAAGACACACTTCATCGAAGGTGGCG
ATGCTGGAGCTCGAGGGGACAAAATCAATGCTTTCATCAAAGCCGTCCTG
TAAGCCCGCTCAGCGGCAGGTGTGttgctctcctccatgtTGCCTTGCTC
TCGAcgcgggaaggaggtggaaaagagaaaggaagggttAGAAAGGAAAT
CTTTCAGAGAGGAGGCGTAGATGGTGTCCAGCTAGGAAAGTCTAGGGAGA
TAACCTTTGGATAG
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Coding sequence (CDS) from alignment at CM002470.1:81197..81510+

>rna6947 ID=rna6947|Name=rna6947|organism=Nannochloropsis gaditana|type=CDS|length=498bp|location=Sequence derived from alignment at CM002470.1:81197..81510+ (Nannochloropsis gaditana)
ATGCGCTGTCAAGACACACTTCATCGAAGGTGGCGATGCTGGAGCTCGAG
GGGACAAAATCAATGCTTTCATCAAAGCCGTCCTGTAAGCCCGCTCAGCG
GCAGGTGTGttgctctcctccatgtTGCCTTGCTCTCGAcgcgggaagga
ggtggaaaagagaaaggaagggttAGAAAGGAAATCTTTCAGAGAGGAGG
CGTAGATGGTGTCCAGCTAGGAAAGTCTAGGGAGATAACCTTTGGATAGA
TGCGCTGTCAAGACACACTTCATCGAAGGTGGCGATGCTGGAGCTCGAGG
GGACAAAATCAATGCTTTCATCAAAGCCGTCCTGTAAGCCCGCTCAGCGG
CAGGTGTGttgctctcctccatgtTGCCTTGCTCTCGAcgcgggaaggag
gtggaaaagagaaaggaagggttAGAAAGGAAATCTTTCAGAGAGGAGGC
GTAGATGGTGTCCAGCTAGGAAAGTCTAGGGAGATAACCTTTGGATAG
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Synonyms
Publications