rna6941, rna6941 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6941
Unique Name	rna6941
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	465
Alignment location	CM002470.1:68382..70136 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_101601g2.10559.mrna
Orig protein id	gnl\|cribi\|Naga_101601g2.10559
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002470.1	supercontig	CM002470.1:68382..70136 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_101601g2	gene6707	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM23748.1	cds6925	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6941	rna6941-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002470.1:68382..70136-
coding sequence from alignment at CM002470.1:68382..70136-

mRNA sequence

>rna6941 ID=rna6941|Name=rna6941|organism=Nannochloropsis gaditana|type=mRNA|length=465bp
ATGCTCTGTCTCAACAGGAACCAGATCAAGTGCTACGTGCCTGAGCGAGC
TGCCACCTCTTCCGGTTTCCATCATTCGCAAAGATTCGAGAATGAAGAAG
GGCAAGACTGTGTAAGCTCAAATATCACGCCATTTGAGGCAGTGAAAGCA
AGCGAAGCGACGGGGCATTTCTCTTCAGCTTGTGACGAAATGAAAGTCAA
ATTAGACATAACTTTGGAAAATAAGGTTGGGTGTTTCGATGGGCGACAAT
CATGGGATCATTCCTTTGGGTTTCGATTGTCTTGGGGTTGTAAGATATTG
AAAGTATTGGGGAAAAGGGACGGGTACTTGTCGTCAGCTTGGCAGGATGT
TCTCAAGAATTTGATATTCAAGAGGGTTCGGATTGAGGTCATGTACAAAA
TTGTGGCATTTGACTTGAGGCGAGTGTTCCCTGGGGTACGGAGACATAAA
ATGAAAAAAAAATGA

protein sequence of rna6941

>rna6941-protein ID=rna6941-protein|Name=rna6941|organism=Nannochloropsis gaditana|type=polypeptide|length=192bp
MIITIMTSAPTYSLHLVLLFSPPPFYFPPPTLFPKAILHAVALTSFRYSF
SSSSLSFSPLPLPSFRPPSVLPLLRPPRPPLFPPRLPPRPRPPLFAADLF
PNSIHMRATQSPGTWTIGLDFVLVPDRYHPSIASMLPVLVVRKLTKLRHP
FLEREIIYGIQMPTKLKTRAIICRCTGLQLELSFFRTHYQEA

mRNA from alignment at CM002470.1:68382..70136-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6941 ID=rna6941|Name=rna6941|organism=Nannochloropsis gaditana|type=mRNA|length=1755bp|location=Sequence derived from alignment at CM002470.1:68382..70136- (Nannochloropsis gaditana)
GATCCCTCGTTCACGAGGTTCTCTTTTTTGTTCATTGATTTACCGCCCTG
TGTGTCATTGCTTGCTCTAGTCTTTTTGTCATTTTTCTTACGCAGGTCGA
CACATTTGCATGCGTAATGTAGAGCCATGCAGAGGTATGAAACGACGGGA
CTGACAGGGTGGACCCTCCTCGGTATTCTTCGTCCTCTTCCTCAGCTCCC
TCCATTGCCCTGTCTTTGTTCGCTTTCCTTTCCTTTTTTTTCTTGATGAG
ATGAAGCCCTCCTCCCTCTCCCTTACCTGCACCGTCAAACATGCACAGAG
ACACACACAGATACATATACCACGTCCTCCATGTTCTCCACCACACTAAT
ACATATACCACGTCCTACATGTTCTCCACCTCTCTTCTGTCCCCTCTCTG
GTTTTGTAATTCTCCCTGTCCCTCTCCGCATTCTCATTCTCCTCCTCCTC
CTTTAACCCTCCTCCTTCTCCTCTTCCTCAGCTGCTCCTATGATCATCAC
CATTATGACGTCGGCGCCTACTTACTCCCTTCACCTAGTCTTGCTCTTTT
CCCCTCCCCCCTTCTATTTCCCCCCCCCCACGCTCTTCCCAAAAGCCATT
TTGCACGCGGTGGCTCTCACTTCCTTTCGCTACTCTTTCTCTTCTTCCTC
CCTTTCCTTTTCTCCTCTTCCTCTTCCTTCGTTTCGTCCCCCTTCTGTCC
TTCCTTTGCTTCGTCCCCCTCGTCCTCCTCTGTTTCCTCCTCGTCTTCCT
CCTCGTCCTCGTCCTCCTCTTTTTGCAGCCGATTTGTTTCCTAACTCCAT
ACATATGCGAGCAACACAATCGCCAGGGACGTGGACCATAGGTCTGGATT
TTGTGCTGGTACCTGACCGATATCATCCCTCTATCGCGAGCATGCTGCCT
GTATTAGTAGTGAGAAAATTGACAAAGCTGAGGCACCCCTTTCTCGAACG
GGAAATTATCTACGGAATACAAATGCCTACAAAATTGAAAACCCGGGCAA
TCATCTGTCGCTGCACAGGACTGCAACTTGAACTATCATTCTTCCGCACA
CACTACCAGGAGGCATGATTTCCACAACAGCCTTCTTCTTTATTTTGAGA
ATCGTATTTTGGCGCGCCATGAAAAAAAAGGGAAAAAGATGCGGTGCAAA
GTTTAATCCATCCTTCTCTTTGGTCTGCCCAAGCCATAGGGCTAACCTCA
TTTTTTTTTCATTTTATGTCTCCGTACCCCAGGGAACACTCGCCTCAAGT
CAAATGCCACAATTTTGTACATGACCTCAATCCGAACCCTCTTGAATATC
AAATTCTTGAGAACACTCGAACCCCACGTCAAGTGTCAAACACAGCACAA
TAGCCTGACTATCCACCTGACAAACATCGAGGTCTCTTACTCCTGCCAAG
CTGACGACAAGTACCCGTCCCTTTTCCCCAATACTTTCAATATCTTACAA
CCCCAAGACAATCGAAACCCAAAGGAATGATCCCATGATTGTCGCCCATC
GAAACACCCAACCTTATTTTCCAAAGTTATGTCCTCAAGAAGACTTTGTC
AACCGTCAAAAAAGCCCTTCTCTTCCTGGTGCACGCGTTAGCAAGACTAA
TTTGACTTTCATTTCGTCACAAGCTGAAGAGAAATGCCCCGTCGCTTCGC
TTGCTTTCACTGCCTCAAATGGCGTGATATTTGAGCTTACACAGTCTTGC
CCTTCTTCATTCTCGAATCTTTGCGAATGATGGAAACCTGTGACAAAAGA
CATGG

Coding sequence (CDS) from alignment at CM002470.1:68382..70136-

>rna6941 ID=rna6941|Name=rna6941|organism=Nannochloropsis gaditana|type=CDS|length=579bp|location=Sequence derived from alignment at CM002470.1:68382..70136- (Nannochloropsis gaditana)
ATGATCATCACCATTATGACGTCGGCGCCTACTTACTCCCTTCACCTAGT
CTTGCTCTTTTCCCCTCCCCCCTTCTATTTCCCCCCCCCCACGCTCTTCC
CAAAAGCCATTTTGCACGCGGTGGCTCTCACTTCCTTTCGCTACTCTTTC
TCTTCTTCCTCCCTTTCCTTTTCTCCTCTTCCTCTTCCTTCGTTTCGTCC
CCCTTCTGTCCTTCCTTTGCTTCGTCCCCCTCGTCCTCCTCTGTTTCCTC
CTCGTCTTCCTCCTCGTCCTCGTCCTCCTCTTTTTGCAGCCGATTTGTTT
CCTAACTCCATACATATGCGAGCAACACAATCGCCAGGGACGTGGACCAT
AGGTCTGGATTTTGTGCTGGTACCTGACCGATATCATCCCTCTATCGCGA
GCATGCTGCCTGTATTAGTAGTGAGAAAATTGACAAAGCTGAGGCACCCC
TTTCTCGAACGGGAAATTATCTACGGAATACAAATGCCTACAAAATTGAA
AACCCGGGCAATCATCTGTCGCTGCACAGGACTGCAACTTGAACTATCAT
TCTTCCGCACACACTACCAGGAGGCATGA

Synonyms

Publications