rna6940, rna6940 (mRNA) Nannochloropsis gaditana

Overview
Namerna6940
Unique Namerna6940
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1356
Alignment locationCM002470.1:68097..68939 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101601g1.10560.mrna
Orig protein idgnl|cribi|Naga_101601g1.10560
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002470.1supercontigCM002470.1:68097..68939 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101601g1gene6706Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6940rna6940-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23749.1cds6924Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6940 ID=rna6940|Name=rna6940|organism=Nannochloropsis gaditana|type=mRNA|length=1356bp
ATGCTGTGTCCCAAGATGAGAACGAGGCCGTTCTTATTATTTTTGGTCGG
GATGCTGGCCCTGAGCACTGCTAGTGCCGCGCCTGCGTTTATGTACGGTA
TCGACGACAACAATGAGATTATTCAATACGATCCGGTTAACAAGATGACC
AGGCTCGTCCAAGATACAGGTTTGACGAAATTTCAAGGAAGTAATGCATT
TGCCTTTGACGAGGTCAGGAACCAGATGTTTTGGCTCTACCAGGGCGATG
CTACCAATCCTGCCGGCTTGTACTATTGGGACCAGGTCACCGGAACCATC
GACCGTATCGCCAGCCAAGCGCAAACCTGGGACAATCAACGCTTCCCGGC
AAATGCGGTGTATTACCGCGACCCCAGCACTGGCATATCATATTTCGTTT
GGATCACTGAGGGTGGGAGCACGGTCAATTTCCTCCCCATCACTTATGAT
GCTTCCGGGAATCCTACTGGAGTAGGAGCAGATATTCAACGAACTATTTC
GGGGCCTTCTTTCAGCCCAAGCTTTATGAGGTTCGGCGATATAGCCGTTC
AGACGAGCACCAAGCAATTATATTTGGCAACAAGCAACGGGCGATTCTCC
AAGATTGACCTCACCAACGCATTCGGGCAGGCCCTGCTTCCTTACACAGA
AATCAAGACGGGCAATCCCTCCCTTCAGCTTGCATTCGACTGCGAAGAAA
ATATCTTGTACGGTCAGCGATACGTTGCGACGGACACTGGCAGTGACAAT
TGGTACACCATCAACCTGGCGACTGGCGTGACGACAACGATTCCCAACTA
CTCAACTGAAGGTGCCAGGTTATCAGCACGGGATCTAGGTGGCTCCTCAT
GCACTGACTCGCCTTTGACAGCAAGCCCTACCCGAGCTCCTACCGGACAA
CCGACCAGCACTCCTACCGCAACCCCCACCTTTTCCCCTAGTGCTAGTCC
CTCATCCGTGGGTCCAACAGTCACACCCACTCCGGCCCCCACATCGTTGC
TACCAACGCCGTCCCCGAATCCCACTGCCTCCCCAACCCTGAGTCCTACT
AGCAGCCCGACAGCGGCGCCGACCTTGACTCCGACAGCGTCTCCAACAAC
TACGCCCACGCCAAGTCCCACTTCCGTCGCACCATTCTGTCGTGACTGTG
CTATAACAAACACTACTTGTGCGGATACTGGAGGCAATTACTTGGGCTTC
TTTCCAAACACTACGACCCCCGAGGCATGCTCGACGCAGTGTCAGACTTT
CTTTCCTGGTTTTGTGAGCTGGTTTGGACTACTTACTGCGTCCGAGCTGT
TCAATACAGCTCCCTGCGAATGGCTCGGTCATTTATCCTGTGCTGCCCCC
CTGTGA
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protein sequence of rna6940

>rna6940-protein ID=rna6940-protein|Name=rna6940|organism=Nannochloropsis gaditana|type=polypeptide|length=154bp
MLCLNRNQIKCYVPERAATSSGFHHSQRFENEEGQDCVSSNITPFEAVKA
SEATGHFSSACDEMKVKLDITLENKVGCFDGRQSWDHSFGFRLSWGCKIL
KVLGKRDGYLSSAWQDVLKNLIFKRVRIEVMYKIVAFDLRRVFPGVRRHK
MKKK
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mRNA from alignment at CM002470.1:68097..68939+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6940 ID=rna6940|Name=rna6940|organism=Nannochloropsis gaditana|type=mRNA|length=843bp|location=Sequence derived from alignment at CM002470.1:68097..68939+ (Nannochloropsis gaditana)
ATGCTCTGTCTCAACAGTTGCCTTTTCCTCATGTAGGCAGACGAAGGTCC
CCCATTCCCCTAACTTCATGCCAtctcgcttttccttcccgatGAAAACT
AGCTCAACGTCACAGAGGAGTTTACAGACAATGTTTTCAACGTCGAATTC
GGAATTTTTGAGGGAACCAGATCAAGTGCTACGTGCCTGAGCGAGCTGCC
ACCTCTTCCGGTACGACACGCAGAAAATGTGCAATGTGTGCCACGCTCGC
TTGGCTCCATTGTGATTCTTTCTTTATGTCTCTTTCCATGTCTTTTGTCA
CAGGTTTCCATCATTCGCAAAGATTCGAGAATGAAGAAGGGCAAGACTGT
GTAAGCTCAAATATCACGCCATTTGAGGCAGTGAAAGCAAGCGAAGCGAC
GGGGCATTTCTCTTCAGCTTGTGACGAAATGAAAGTCAAATTAGTCTTGC
TAACGCGTGCaccaggaagagaagggctTTTTTGACGGTTGACAAAGTCT
TCTTGAGGACATAACTTTGGAAAATAAGGTTGGGTGTTTCGATGGGCGAC
AATCATGGGATCATTCCTTTGGGTTTCGATTGTCTTGGGGTTGTAAGATA
TTGAAAGTAttggggaaaagggacgggTACTTGTCGTCAGCTTGGCAGGA
GTAAGAGACCTCGATGTTTGTCAGGTGGATAGTCAGGCTATTGTGCTGTG
TTTGACACTTGACGTGGGGTTCGAGTGTTCTCAAGAATTTGATATTCAAG
AGGGTTCGGATTGAGGTCATGTACAAAATTGTGGCATTTGACTTGAGGCG
AGTGTTCCCTGGGGTACGGAGACataaaatgaaaaaaaaatga
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Coding sequence (CDS) from alignment at CM002470.1:68097..68939+

>rna6940 ID=rna6940|Name=rna6940|organism=Nannochloropsis gaditana|type=CDS|length=2325bp|location=Sequence derived from alignment at CM002470.1:68097..68939+ (Nannochloropsis gaditana)
ATGCTCTGTCTCAACAGGAACCAGATCAAGTGCTACGTGCCTGAGCGAGC
TGCCACCTCTTCCGGTTTCCATCATTCGCAAAGATTCGAGAATGAAGAAG
GGCAAGACTGTGTAAGCTCAAATATCACGCCATTTGAGGCAGTGAAAGCA
AGCGAAGCGACGGGGCATTTCTCTTCAGCTTGTGACGAAATGAAAGTCAA
ATTAGACATAACTTTGGAAAATAAGGTTGGGTGTTTCGATGGGCGACAAT
CATGGGATCATTCCTTTGGGTTTCGATTGTCTTGGGGTTGTAAGATATTG
AAAGTAttggggaaaagggacgggTACTTGTCGTCAGCTTGGCAGGATGT
TCTCAAGAATTTGATATTCAAGAGGGTTCGGATTGAGGTCATGTACAAAA
TTGTGGCATTTGACTTGAGGCGAGTGTTCCCTGGGGTACGGAGACataaa
atgaaaaaaaaatgaATGCTCTGTCTCAACAGGAACCAGATCAAGTGCTA
CGTGCCTGAGCGAGCTGCCACCTCTTCCGGTTTCCATCATTCGCAAAGAT
TCGAGAATGAAGAAGGGCAAGACTGTGTAAGCTCAAATATCACGCCATTT
GAGGCAGTGAAAGCAAGCGAAGCGACGGGGCATTTCTCTTCAGCTTGTGA
CGAAATGAAAGTCAAATTAGACATAACTTTGGAAAATAAGGTTGGGTGTT
TCGATGGGCGACAATCATGGGATCATTCCTTTGGGTTTCGATTGTCTTGG
GGTTGTAAGATATTGAAAGTAttggggaaaagggacgggTACTTGTCGTC
AGCTTGGCAGGATGTTCTCAAGAATTTGATATTCAAGAGGGTTCGGATTG
AGGTCATGTACAAAATTGTGGCATTTGACTTGAGGCGAGTGTTCCCTGGG
GTACGGAGACataaaatgaaaaaaaaatgaATGCTCTGTCTCAACAGGAA
CCAGATCAAGTGCTACGTGCCTGAGCGAGCTGCCACCTCTTCCGGTTTCC
ATCATTCGCAAAGATTCGAGAATGAAGAAGGGCAAGACTGTGTAAGCTCA
AATATCACGCCATTTGAGGCAGTGAAAGCAAGCGAAGCGACGGGGCATTT
CTCTTCAGCTTGTGACGAAATGAAAGTCAAATTAGACATAACTTTGGAAA
ATAAGGTTGGGTGTTTCGATGGGCGACAATCATGGGATCATTCCTTTGGG
TTTCGATTGTCTTGGGGTTGTAAGATATTGAAAGTAttggggaaaaggga
cgggTACTTGTCGTCAGCTTGGCAGGATGTTCTCAAGAATTTGATATTCA
AGAGGGTTCGGATTGAGGTCATGTACAAAATTGTGGCATTTGACTTGAGG
CGAGTGTTCCCTGGGGTACGGAGACataaaatgaaaaaaaaatgaATGCT
CTGTCTCAACAGGAACCAGATCAAGTGCTACGTGCCTGAGCGAGCTGCCA
CCTCTTCCGGTTTCCATCATTCGCAAAGATTCGAGAATGAAGAAGGGCAA
GACTGTGTAAGCTCAAATATCACGCCATTTGAGGCAGTGAAAGCAAGCGA
AGCGACGGGGCATTTCTCTTCAGCTTGTGACGAAATGAAAGTCAAATTAG
ACATAACTTTGGAAAATAAGGTTGGGTGTTTCGATGGGCGACAATCATGG
GATCATTCCTTTGGGTTTCGATTGTCTTGGGGTTGTAAGATATTGAAAGT
AttggggaaaagggacgggTACTTGTCGTCAGCTTGGCAGGATGTTCTCA
AGAATTTGATATTCAAGAGGGTTCGGATTGAGGTCATGTACAAAATTGTG
GCATTTGACTTGAGGCGAGTGTTCCCTGGGGTACGGAGACataaaatgaa
aaaaaaatgaATGCTCTGTCTCAACAGGAACCAGATCAAGTGCTACGTGC
CTGAGCGAGCTGCCACCTCTTCCGGTTTCCATCATTCGCAAAGATTCGAG
AATGAAGAAGGGCAAGACTGTGTAAGCTCAAATATCACGCCATTTGAGGC
AGTGAAAGCAAGCGAAGCGACGGGGCATTTCTCTTCAGCTTGTGACGAAA
TGAAAGTCAAATTAGACATAACTTTGGAAAATAAGGTTGGGTGTTTCGAT
GGGCGACAATCATGGGATCATTCCTTTGGGTTTCGATTGTCTTGGGGTTG
TAAGATATTGAAAGTAttggggaaaagggacgggTACTTGTCGTCAGCTT
GGCAGGATGTTCTCAAGAATTTGATATTCAAGAGGGTTCGGATTGAGGTC
ATGTACAAAATTGTGGCATTTGACTTGAGGCGAGTGTTCCCTGGGGTACG
GAGACataaaatgaaaaaaaaatga
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Synonyms
Publications