rna6938, rna6938 (mRNA) Nannochloropsis gaditana

Overview
Namerna6938
Unique Namerna6938
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1786
Alignment locationCM002470.1:64316..65403 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_102159g1.4407.mrna
Orig protein idgnl|cribi|Naga_102159g1.4407
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002470.1supercontigCM002470.1:64316..65403 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_102159g1gene6704Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6938rna6938-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23751.1cds6922Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6938 ID=rna6938|Name=rna6938|organism=Nannochloropsis gaditana|type=mRNA|length=1786bp
AGCCCTCCCCCCCGGGCTTACCCCACCTTTTCCATCGGGGACCAGGCCGA
AGAAGACGAGGGGGAGGGCGGAACGGAGGGAGGGAAGGAGGGCGGGACGG
AGGAAAATCCTGTGGCGGTCCTGGGTCCTGCGTCGTACCCGCCCTCCACC
GGTCCTAAGCAGGAGGGAGGAAGGGAGAGGGGGGGAGGGGAGGGAGAGAA
GGGAGGAGAGAGAATGGTAGCAGACACGTGGCGAGGCGATGACGGGGAAT
ATGTGATGGAAAAGGCCCCGTGGCGAGCCGATGACGGGGCGCGTGTGACG
GAAAAGGCCCCGTGGCCAGGCGATGACGGGGAGCATGTGATGGAAAAGGA
CCCCAAGCCGGGCCAGGCGCCGGGGGAGGGAGGAGAGGAGGACGCCCTTC
TGCTGGCGTTGCAGGCCGTGACGCTGGAAAAAGGGGAAGGAGGGAGTGGA
GGAGGTGAAGGTGGGGGAGGAGGGAGGGAAGGAATTGATGGATCTGGAAG
ACGTGGGGAAGTGAAGGAGGTACGGGGGGAGCAAGGAGGAGAGGGTGGGC
CGGGATCGGCCTCCTTATCACCGCCTGTACACATAGCAATGAGGATGAAT
TTGGCTGAGGATGATGATTTGATGGGCTTGGAGGAAGAACTCGGTCTGAA
TTCCTCCCCCACTCCAGGGGCAAAGCACCTGCTAGCTCCAATCACGTCGA
GGCAGAGAGGCGACCACAGCCATGGAAAGAGTGGGGATCATGCGGATGTC
TTGGCGGAACTGGAAGCGTTGGATGACGGCCTGGAAGAGTTTGAGGGCTA
TCTCAAGTCCTTGGAACAAAAGCCATAGAAAAAGGTGGTGGAATGGCCGG
GAAAATGGAGACGGGGCAGGGACGGACACGGAATGGGGAAATAAAGTGTG
CATTTTAAACAAAACAAAGGGAGAGGGAAACATGTCGGCACATTGAAAGC
AATTCATGCGTAACCAGTTTGAAAGGAGAGGTGAGGCGTGTTGGTTATAG
AGCGGGGCCGTAACGAGATGGTAAATAATTCCTTAATACGACCCATTTGG
TGGATAAATTTCCCTACAATCTTGGGGAGAGTATGCTTATCGATGAGTCT
CTGTTCACGGGTTGCTAGCAACTGGTTGAAAATGCCCTGCGACCAATTAT
ATAAGTAATGGTTAATACGCTTTTTTCACGTGCTTGCCTCCCCAGCAAGC
TTGTCACAGAGCTCTCTCATGCGACCATGTGGGCTTATAAACCCCACATT
GACGCACACAAAGACAGACTCCCCCCCCCCCCAAAATCTTCAACATACTA
CGCTTAAGGAGCCATCAGGGGTATCCTCGCAATGTAAATTCAGCAATCAA
GACGCTGACAATTAAAAAATTGGGTGCCCAGCCGAGGGGAACGTAAAGCG
AGATAGCACTTGTGTCTTCCCCCCTCCCACCCCCTTTCCTTTCCGTGTGA
CCATAGAAGGACGAAGAAAAGCCAGGACAGTCCTAGAGCCCTGGTTTCTG
CGTGCTCTTGACGTTGCTTTTTGCGTTTCTGTGGGCTGACACAGGAATTT
TTAAGAACGCCTGGGGACACAATGACCGTCACTGCTGATCATGCCGACGG
CGACCGGGAGCACGGCTCTTTGGACACTGCGTCGATGGCACGTCCTGGGG
TGGAGGAGCGCATCAAACACTTGCTTGCAGCGGGTGTGAAAGACAGCGCC
TACGAGGCCTTGCAATTATTTTCCTCCCAAGCCAAACGACACGCAAAAGA
GGGGGACGTGGATGCCGGCGTGGGCATCGCGCTGCA
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protein sequence of rna6938

>rna6938-protein ID=rna6938-protein|Name=rna6938|organism=Nannochloropsis gaditana|type=polypeptide|length=114bp
MHGPTYSPLAPLHRSLSYSCPPCLTPFHTSFYHPSSPLLHLERRKRGTKD
DTLLHLFPGSPSPTSQFLFISLSRSSPCASSVFSERDQLVESGICQGYST
LFIEISTRRNWCLS
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mRNA from alignment at CM002470.1:64316..65403+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6938 ID=rna6938|Name=rna6938|organism=Nannochloropsis gaditana|type=mRNA|length=1088bp|location=Sequence derived from alignment at CM002470.1:64316..65403+ (Nannochloropsis gaditana)
CGCTCTGGCGCTCTATTCCCAAGGGATGGCAACAGAGCCTGACAATCAAG
TTTTGGACAGCGAGGGAAATCATGAACACATGGAGAGTCGATTTCTCGAG
ACGCCAAGGCTCCTCACgggcctggaaggaggatggagggggtgaTTCTT
CTCTCATCACAATGTACAAGCTAGGCGCTCAAACACCGCAAGTATTCGAA
AAGAACACGAAGCAAGACCACCCGAAATAAGAAACAGCACCAattacttc
cctccctccctcgctccctttcttgctcaTTCCTTCCAAAAATGCATGGT
CCCACCTACAGCCCTCTCGCTCCATTGCATAGATCCCTCTCTtactcttg
ccctccctgcctcacTCCCTTTCACACTTCTTTCTAccatccctccagcc
ctctcctccatttggagagaaggaagcgtgGGACGAAAGACGACACACTT
CTACACCTTTTTCCTggatctccttcccccacatCTCAATTCTTATTCAT
ATCTCTCTCTCGTAGTTCTCCATGCGCGAGTTCTGTGTTTTCGGAGAGAG
ATCAGCTCGTTGAAAGTGGCATTTGTCAGGGTTATTCTACATTATTTATA
GAGATTTCAACTCGTCGAAACTGGTGTTTGTCATAGGGAGAACGTGTTGT
CATAGTGAATACAAAAAGAGGCTTCGGTTCGTCAAAAGTAGTATGTGTCG
TGTAAAGGGCATCTTTTGAGGAATACGAATTTCATCTTCGGAACTTTTTG
ACGCGAGCGCCGCAGAGAACGGGGGGCATAGTTCCGTTGGGGAGGGCTTC
TGTGTGTTCCGACCGGTGTGTCCTGTATTCTGCCTTGTAAGCGTACATCT
CATCTTTTTCCCATGGAATATAGCAGATTGGTTTCCATTACGTGATAGCC
CTTTTGACTTGTACCTGTGGTGCCCTGCACCTTGCTACAATATAACGTGG
TACTTGAGGTCCTGTTCTTTTCTGAGTAGTCCGTTGGAGTCAGATTTGGG
CCCATGTCACCCACACCATATTGAGATTTGGGCCCATATCACCCACACCA
TATTGGATCGATGCACGATGTCCAAGTGATCTTCCTCA
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Coding sequence (CDS) from alignment at CM002470.1:64316..65403+

>rna6938 ID=rna6938|Name=rna6938|organism=Nannochloropsis gaditana|type=CDS|length=345bp|location=Sequence derived from alignment at CM002470.1:64316..65403+ (Nannochloropsis gaditana)
ATGCATGGTCCCACCTACAGCCCTCTCGCTCCATTGCATAGATCCCTCTC
TtactcttgccctccctgcctcacTCCCTTTCACACTTCTTTCTAccatc
cctccagccctctcctccatttggagagaaggaagcgtgGGACGAAAGAC
GACACACTTCTACACCTTTTTCCTggatctccttcccccacatCTCAATT
CTTATTCATATCTCTCTCTCGTAGTTCTCCATGCGCGAGTTCTGTGTTTT
CGGAGAGAGATCAGCTCGTTGAAAGTGGCATTTGTCAGGGTTATTCTACA
TTATTTATAGAGATTTCAACTCGTCGAAACTGGTGTTTGTCATAG
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Synonyms
Publications