rna6937, rna6937 (mRNA) Nannochloropsis gaditana

Overview
Namerna6937
Unique Namerna6937
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length522
Alignment locationCM002470.1:60243..62219 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101602g2.1425.mrna
Orig protein idgnl|cribi|Naga_101602g2.1425
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002470.1supercontigCM002470.1:60243..62219 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101602g2gene6703Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23752.1cds6921Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6937rna6937-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6937 ID=rna6937|Name=rna6937|organism=Nannochloropsis gaditana|type=mRNA|length=522bp
CGTTCCAAGCAGAAAACTGGCAGAAAAATGCCAACAAGTTGTGACAAACC
CATCTTATCCCCACAAGTTCTCCCTTTGACCTCCGTATTAACACGAGCCC
TTTCCATTTTCTAATTTCGAAATTTTAATTGGTTTTCTGGAGACGTGGCG
ATGGGGAAGAGGAAGACCTTGGTCCGGGCAATCACTACACAAACAGATTT
GGAAGCTTTTCAGAATAGTAAGACATATGCCGACTTCCTCGCCTTCATTC
GGGCGTGCAACCAGAGCGTTCGTGGCATCGCTATCAGCCAGGACTATCCC
AACAAGAACGGTCCTGTAGTGTCTGCGTTGGTCGCGTACCTGGAAGAAGC
GTGGGGTTGGGTGGACGACATCCCGGCGCTGCAGCAGCCCATGCGATTTG
GGAACAAGGCCTTCAGGACATGGCACGCTCGCTTAGAAGCCACCGCGCCC
CGCGCCATCGAGAACCTCCTGGTCGCCTCCCAGGTAGGTAGGTAGGGAGG
GAGGGAGGGAGGGAGGGAAGGA
back to top

protein sequence of rna6937

>rna6937-protein ID=rna6937-protein|Name=rna6937|organism=Nannochloropsis gaditana|type=polypeptide|length=275bp
SPPPRAYPTFSIGDQAEEDEGEGGTEGGKEGGTEENPVAVLGPASYPPST
GPKQEGGRERGGGEGEKGGERMVADTWRGDDGEYVMEKAPWRADDGARVT
EKAPWPGDDGEHVMEKDPKPGQAPGEGGEEDALLLALQAVTLEKGEGGSG
GGEGGGGGREGIDGSGRRGEVKEVRGEQGGEGGPGSASLSPPVHIAMRMN
LAEDDDLMGLEEELGLNSSPTPGAKHLLAPITSRQRGDHSHGKSGDHADV
LAELEALDDGLEEFEGYLKSLEQKP
back to top

mRNA from alignment at CM002470.1:60243..62219-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6937 ID=rna6937|Name=rna6937|organism=Nannochloropsis gaditana|type=mRNA|length=1977bp|location=Sequence derived from alignment at CM002470.1:60243..62219- (Nannochloropsis gaditana)
AGCCCTCCCCCCCGGGCTTACCCCACCTTTTCCATCGGGGACCAGGCCGA
AGAAGACGAGGGGGAGGGCGGAACGGAGGGAGGGAAGGAGGGCGGGACGG
AGGAAAATCCTGTGGCGGTCCTGGGTCCTGCGTCGTACCCGCCCTCCACC
GGTCCTAAGCAGGAGGGAGGAAGGGAGAGGGGGGGAGGGGAGGGAGAGAA
GGGAGGAGAGAGAATGGTAGCAGACACGTGGCGAGGCGATGACGGGGAAT
ATGTGATGGAAAAGGCCCCGTGGCGAGCCGATGACGGGGCGCGTGTGACG
GAAAAGGCCCCGTGGCCAGGCGATGACGGGGAGCATGTGATGGAAAAGGA
CCCCAAGCCGGGCCAGGCGCCGGGGGAGGGAGGAGAGGAGGACGCCCTTC
TGCTGGCGTTGCAGGCCGTGACGCTGGAAAAAGGGGAAGGAGGGAGTGGA
GGAGGTGAAGGTGGGGGAGGAGGGAGGGAAGGAATTGATGGATCTGGAAG
ACGTGGGGAAGTGAAGGAGGTACGGGGGGAGCAAGGAGGAGAGGGTGGGC
CGGGATCGGCCTCCTTATCACCGCCTGTACACATAGCAATGAGGATGAAT
TTGGCTGAGGATGATGATTTGATGGGCTTGGAGGAAGAACTCGGTCTGAA
TTCCTCCCCCACTCCAGGGGCAAAGCACCTGCTAGCTCCAATCACGTCGA
GGCAGAGAGGCGACCACAGCCATGGAAAGAGTGGGGATCATGCGGATGTC
TTGGCGGAACTGGAAGCGTTGGATGACGGCCTGGAAGAGTTTGAGGGCTA
TCTCAAGTCCTTGGAACAAAAGCCATAGAAAAAGGTGGTGGAATGGCCGG
GAAAATGGAGACGGGGCAGGGACGGACACGGAATGGGGAAATAAAGTGTG
CATTTTAAACAAAACAAAGGGAGAGGGAAACATGTCGGCACATTGAAAGC
AATTCATGCGTAACCAGTTTGAAAGGAGAGGTGAGGCGTGTTGGTTATAG
AGCGGGGCCGTAACGAGATGGTAAATAATTCCTTAATACGACCCATTTGG
TGGATAAATTTCCCTACAATCTTGGGGAGAGTATGCTTATCGATGAGTCT
CTGTTCACGGGTTGCTAGCAACTGGTTGAAAATGCCCTGCGACCAATTAT
ATAAGTAATGGTTAATACGCTTTTTTCACGTGCTTGCCTCCCCAGCAAGC
TTGTCACAGAGCTCTCTCATGCGACCATGTGGGCTTATAAACCCCACATT
GACGCACACAAAGACAGACTCCCCCCCCCCCCAAAATCTTCAACATACTA
CGCTTAAGGAGCCATCAGGGGTATCCTCGCAATGTAAATTCAGCAATCAA
GACGCTGACAATTAAAAAATTGGGTGCCCAGCCGAGGGGAACGTAAAGCG
AGATAGCACTTGTGTCTTCCCCCCTCCCACCCCCTTTCCTTTCCGTGTGA
CCATAGAAGGACGAAGAAAAGCCAGGACAGTCCTAGAGCCCTGGTTTCTG
CGTGCTCTTGACGTTGCTTTTTGCGTTTCTGTGGGCTGACACAGGAATTT
TTAAGAACGCCTGGGGACACAATGACCGTCACTGCTGATCATGCCGACGG
CGACCGGGAGCACGGCTCTTTGGACACTGCGTCGATGGCACGTCCTGGGG
TGGAGGAGCGCATCAAACACTTGCTTGCAGCGGGTGTGAAAGACAGGTGT
GGTCAAGACGGCTCGGAAACAGGAAGGGTGATGGGGTGGGAAAATGCCTT
TAAAATAGCACTTTGTGCGCGGGTGTTGTGTAGAAGGGGAGGTTTATCCT
TTGTTCTACGCCCATTCGTGCACGCAAATCTCCTCCGAATAATTCACTCA
CTACCACGTTTTGTGCGCGCCACTTTTGCCATGGTAGCGCCTACGAGGCC
TTGCAATTATTTTCCTCCCAAGCCAAACGACACGCAAAAGAGGGGGACGT
GGATGCCGGCGTGGGCATCGCGCTGCA
back to top

Coding sequence (CDS) from alignment at CM002470.1:60243..62219-

>rna6937 ID=rna6937|Name=rna6937|organism=Nannochloropsis gaditana|type=CDS|length=828bp|location=Sequence derived from alignment at CM002470.1:60243..62219- (Nannochloropsis gaditana)
AGCCCTCCCCCCCGGGCTTACCCCACCTTTTCCATCGGGGACCAGGCCGA
AGAAGACGAGGGGGAGGGCGGAACGGAGGGAGGGAAGGAGGGCGGGACGG
AGGAAAATCCTGTGGCGGTCCTGGGTCCTGCGTCGTACCCGCCCTCCACC
GGTCCTAAGCAGGAGGGAGGAAGGGAGAGGGGGGGAGGGGAGGGAGAGAA
GGGAGGAGAGAGAATGGTAGCAGACACGTGGCGAGGCGATGACGGGGAAT
ATGTGATGGAAAAGGCCCCGTGGCGAGCCGATGACGGGGCGCGTGTGACG
GAAAAGGCCCCGTGGCCAGGCGATGACGGGGAGCATGTGATGGAAAAGGA
CCCCAAGCCGGGCCAGGCGCCGGGGGAGGGAGGAGAGGAGGACGCCCTTC
TGCTGGCGTTGCAGGCCGTGACGCTGGAAAAAGGGGAAGGAGGGAGTGGA
GGAGGTGAAGGTGGGGGAGGAGGGAGGGAAGGAATTGATGGATCTGGAAG
ACGTGGGGAAGTGAAGGAGGTACGGGGGGAGCAAGGAGGAGAGGGTGGGC
CGGGATCGGCCTCCTTATCACCGCCTGTACACATAGCAATGAGGATGAAT
TTGGCTGAGGATGATGATTTGATGGGCTTGGAGGAAGAACTCGGTCTGAA
TTCCTCCCCCACTCCAGGGGCAAAGCACCTGCTAGCTCCAATCACGTCGA
GGCAGAGAGGCGACCACAGCCATGGAAAGAGTGGGGATCATGCGGATGTC
TTGGCGGAACTGGAAGCGTTGGATGACGGCCTGGAAGAGTTTGAGGGCTA
TCTCAAGTCCTTGGAACAAAAGCCATAG
back to top
Synonyms
Publications