rna6933, rna6933 (mRNA) Nannochloropsis gaditana

Overview
Namerna6933
Unique Namerna6933
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length204
Alignment locationCM002470.1:47778..48456 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100573g2.6244.mrna
Orig protein idgnl|cribi|Naga_100573g2.6244
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002470.1supercontigCM002470.1:47778..48456 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100573g2gene6699Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23755.1cds6917Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6933rna6933-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6933 ID=rna6933|Name=rna6933|organism=Nannochloropsis gaditana|type=mRNA|length=204bp
ATGGTGCCGCGCGAGTCGACTGATTCAGCGCCCCTGCGATTCGCGGAGGC
TTGGTTTCGCATGACAAATTGGGAGGTCACTAAGCGTGATGCTATGGTAC
TAGAACCCACACTCAGGCTCGATTTGTCTTTGAGAGCCATAGATGGTAGA
ATAAGATCGAGTTCATCACGGTCTAGGATCAAAGCTAAGAAGTACTGTAA
ATAA
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protein sequence of rna6933

>rna6933-protein ID=rna6933-protein|Name=rna6933|organism=Nannochloropsis gaditana|type=polypeptide|length=105bp
MTSHKKKPLREERRFRNGPCNLTYNIWCFVLSCLRCDEKTIQPLWQRSRV
HIVNSRWTISQARRLLIINAFEVVDLSHQMLLPRLVRRLSGCSDTFTQAS
PPNKG
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mRNA from alignment at CM002470.1:47778..48456-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6933 ID=rna6933|Name=rna6933|organism=Nannochloropsis gaditana|type=mRNA|length=679bp|location=Sequence derived from alignment at CM002470.1:47778..48456- (Nannochloropsis gaditana)
TGCATGGAGAGCCTTCCCCAAACTCGATAGATGCATGTTTAAATGGCCAG
ACTAATCTCACATCAGTCCTTTTACATCTGCCCTTGGATCACGACGAACA
GGCAGACGGAAACTTCAACTCGCGCTGCGTTAGGCTACTATGACCTCCCA
TAAAAAAAAGCCTTTGAGAGAGGAAAGACGCTTTCGAAATGGTCCATGCA
ACCTGACATATAATATTTGGTGCTTTGTTCTATCTTGCCTCCGTTGTGAT
GAGAAAACAATTCAGCCTCTGTGGCAAAGAAGTCGTGTTCACATCGTGAA
CTCGAGATGGACAATAAGTCAAGCACGTCGCCTGTTGATTATCAACGCTT
TTGAAGTGGTCGATTTGAGCCATCAAATGCTCCTGCCTCGACTGGTAAGG
AGACTTAGCGGTTGTTCGGACACTTTCACACAAGCAAGTCCTCCTAACAA
AGGGTAAAAACACCCTACTGTAAACAAACTCAAAAAAATGGCCCCCTCAG
TGACTGGGCTTCGCCTCTCAAACATACGCAGGTACACTTTCTGGAAAGTT
TTGGCATCTCCAAATATGTTGGAAGAGAGAATGCGTCATGAGAGGAGTTT
GAGAATAATGGTATTGTATGTGGGTTATCTAACTACCCAAAGAAAGTGAA
CCAAAGAACATAAAGGATTCTTTTTCCGA
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Coding sequence (CDS) from alignment at CM002470.1:47778..48456-

>rna6933 ID=rna6933|Name=rna6933|organism=Nannochloropsis gaditana|type=CDS|length=318bp|location=Sequence derived from alignment at CM002470.1:47778..48456- (Nannochloropsis gaditana)
ATGACCTCCCATAAAAAAAAGCCTTTGAGAGAGGAAAGACGCTTTCGAAA
TGGTCCATGCAACCTGACATATAATATTTGGTGCTTTGTTCTATCTTGCC
TCCGTTGTGATGAGAAAACAATTCAGCCTCTGTGGCAAAGAAGTCGTGTT
CACATCGTGAACTCGAGATGGACAATAAGTCAAGCACGTCGCCTGTTGAT
TATCAACGCTTTTGAAGTGGTCGATTTGAGCCATCAAATGCTCCTGCCTC
GACTGGTAAGGAGACTTAGCGGTTGTTCGGACACTTTCACACAAGCAAGT
CCTCCTAACAAAGGGTAA
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Synonyms
Publications