rna6927, rna6927 (mRNA) Nannochloropsis gaditana

Overview
Namerna6927
Unique Namerna6927
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length285
Alignment locationCM002470.1:39400..40132 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101745g2.10235.mrna
Orig protein idgnl|cribi|Naga_101745g2.10235
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002470.1supercontigCM002470.1:39400..40132 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101745g2gene6693Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23763.1cds6911Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6927rna6927-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6927 ID=rna6927|Name=rna6927|organism=Nannochloropsis gaditana|type=mRNA|length=285bp
ATGCATGGCAAGAGAGGGAATGAGCGAGGCCTGAGAGGGAAAGAGGGACG
TGCATGGGAGGTAGAGATTGTGTGGACCGGGAGGCAAGGTTGCGTGCTGC
CGCACAGAGAGGAAAGAACCCCCCCCGAAACTCTCCCTCACAGTGCAGGA
GGAAAAAGGGCGGATTGTGATTGGGGTGGCGTCACGTCTGAGATCCTCCT
TTCCCGTTACAGTGAGATGACGGTGACCCCCCCCCAAATACGGCCCATGT
CCTTGGCCGGGCACTGGAAGAGCCGCACGGTATAA
back to top

protein sequence of rna6927

>rna6927-protein ID=rna6927-protein|Name=rna6927|organism=Nannochloropsis gaditana|type=polypeptide|length=84bp
MDGGMERARWKGRRMRCVIKYTFIATAPGKALGPHWEGRREGGREGGREG
DRGGDAEMGVDHTSDLFSHSKWEWEREKAGGKGR
back to top

mRNA from alignment at CM002470.1:39400..40132-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6927 ID=rna6927|Name=rna6927|organism=Nannochloropsis gaditana|type=mRNA|length=733bp|location=Sequence derived from alignment at CM002470.1:39400..40132- (Nannochloropsis gaditana)
TAAAAGACGCGGTCTCCCGCTTCTCCTCCCGTCTGCCTCACCTGGAGAGT
GACAAGGTACTGCCAGCCTCCTTCGTTTCCTCCTTCTAGAGGGAGGGAGG
GAGGGAGGGAGGGGGGGAGGGATGGGGACCATGCGGTCATGGATGGTGGG
ATGGAAAGGGCGAGGTGGAAGGGAAGGAGAATGCGCTGCGTCATCAAATA
TACGTTCATCGCCACGGCGCCGGGCAAAGCGCTAGGGCCCCACTGGGAGG
GAAGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGGGACAGGGGGGGC
GATGCAGAAATGGGTGTGGATCATACCTCAGACCTTTTCTCTCATTCAAA
GTGGGAATGGGAGAGGGAAAAGGCCGGCGGAAAGGGGAGGTAGGGAGGGC
GTCCGACTCACACAAGTGGCTTCTGCAGAGGGAGGGAGGGAGGGAGGGAG
GGAGGGAGGGAGGAAGGGGCAGTGGGGTGAACTAGTACGGCCGAATATAA
GAGAAGGGGAAAGACGGAGGAAGTGAAAAAGGAAATGAACGAGTGAGTAT
GTTAGGGAAGACGTAGGAGGCAGGGACTTCCCAGGGAAGAAAGGAGGTAA
TTTGCTTTCGGTTCGTTGCGTTTATTTTTTATTCACTCGAGCAACCACGT
GCGCGGAAACCGGACTCTGCCACGCGCGCGCCCAGACACTGTCTCTGGGC
CGGTGGTGCCCTCCCCCCCACGACAGACAGACA
back to top

Coding sequence (CDS) from alignment at CM002470.1:39400..40132-

>rna6927 ID=rna6927|Name=rna6927|organism=Nannochloropsis gaditana|type=CDS|length=255bp|location=Sequence derived from alignment at CM002470.1:39400..40132- (Nannochloropsis gaditana)
ATGGATGGTGGGATGGAAAGGGCGAGGTGGAAGGGAAGGAGAATGCGCTG
CGTCATCAAATATACGTTCATCGCCACGGCGCCGGGCAAAGCGCTAGGGC
CCCACTGGGAGGGAAGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGG
GACAGGGGGGGCGATGCAGAAATGGGTGTGGATCATACCTCAGACCTTTT
CTCTCATTCAAAGTGGGAATGGGAGAGGGAAAAGGCCGGCGGAAAGGGGA
GGTAG
back to top
Synonyms
Publications